ifnlr1


Basic Information

Item Value
gene id ifnlr1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4842459 ~ 4856152 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923880.2
cacacacacacacacacacacacacacctgctaaaGGGCACTTCTTTACCCTGGATTCTTCAGAGATGGAACAGAGATAGAAGACGGCTCATGGCTCATGTCTGTCCCGGACACAGGGGGGAAAGAAGACtaaaagatgtgtttttgtcccAATTCTGATGAAAAATTGCTCTGAATATCTGTGGAGTCCTGTGAGGGAAATCAAAACTActagtctttgttttttttttccttgaactCTGCTATGGATCTGGATTTGTGGCCTCTAAGAGCACTTTTCCTGCTTGTCTGGTGTTCAGGCTTCTGTTGCAATGGTTGCAATATGACAAAGGTGTATTTTGATTCCCGCAATTTTCACACCAGGGTCCGCTGGGATGAAGTGAAAATCCCAGGCCAAGAAGTTCGCTATAGCGTCAGATTTCACGTATATGGAGAGCGATACAAGCTGATGATTGGATGCCAGAATATCTCTGAACCTTTCTGTGATCTCAGTTCTGTGATGACGGACATTCGCGCTAAATATTTTGTCAAGATCATGGCGGATGAGTTATGCCTCGGCgaatacacacacttcatcccCTTAGAAAAAACTTCTCTGGAAGCTCCAAAGCTGTCCGTGATAACGGTAGGGTCCTCTCTCACCGTAACACTCACAACTCCCATGGGGCCTTGGAACCACTCAATTAGGGAGATCAGCTGTTGGGAAAGGTGCCAGGATTCTGGGAAATCATCTGTTAACTACATTGTCAGTCTCACACACCCAGAGTCTGAAGCTAGAAAGGTGTTTCAGAACACGTCTGGCATGATTACACTGAGTCATCTACACGTGAACACGGAGTACTGTGGCATTGTGTTGTATGAGCTCACCCATCCCTCCATAAAACGACAGAGTGAAAACACCACCTTCTGTGTGACTTTGCCAGctgCAGACAAGCCCTGGATTCCTGTATTCATCATCTCTGCATTAGTAGCTCTTTTCCTCTTGATCACCTTGGCGTGGATTTTGTGCCAGCAGCACGTCACAAGGAAGAGGAACCTGCCCAAGGCGTTGCACATCATGTCGATGAACACCACTCCTAATTTCAACCCAGATCCTAAAGTGGAGATAACCACCGTGATGGTATACACTAAACCTCCATGGAATACTGTCAAGTCTGATCTAGCCTTACCTGATTCCTTACCTGAGTCAAAAGCTGTGAGCAATGCAGGTTACGCAGCCCAGGACTACCATGACCAAGATTGGCACTGTCATTCTTACACTAATGAACAGGTGGCGCCAGTTAGTGACCGGAGTGCTGAATCCTGCACCAGTTATAGCATGGTGGTGGGTGTGATGGTACCCCAGGATCGAGAGGAGTTGTCCAGTTGTGCTAACGACAGTGGGTTAGGAGACTCCATCAGCCCTGGATTGTCCTCTTGCACAGAAGAGGATCTATTCCAGGTCATATCTAATGCAGAACCAGAAGAAGACCTGGACATGATAGAGCCAGACTCCACCAGTGAGCTTTTGGTGCTGCCAGTGTCACGTGGCACCAATGGGATACTGCAGTTCTCCAGCTTAGCATTCCAGCCTCTGGCTTCAAATGTAAACCACAGCTCAGAGATTGTGCCTCTTGTGGCAAGGTCAACAACAGCTGGAGAGAGGACTCTTTTGTTGACAGATCTTGTCTCCATGGATGACTTACACTGGACAGACAATGAAACAAGTTCTGATTACAGGAAAGCCTACCTACCAAACGGGGTGCCTCAGAGCTGCTCGGAGTTACCCTCTAGTAAAACTATTTCCACAATTCTGTTATCTGACTCTACATCCAACTATAGAGAAAACTGGGTACCGGGAATCCTACCAGATCCCCTGCCAAATGACAGGAACTGCATTGTGAGTGACAATCAGCTACATGAATTGGCTGAACCAGAAGAGGGTGTAGGTGAATCACCATCAGCAACCTTTTTAGGTGGATGGATGGTGCAAATCCAAGGatagtatcttttttttcttaagcatTGGCTCTGACTCTTAGTGCTGGCTTAAAAAGAATTATTTAGCCATCCACAATCATGTTGTTAATGAAGAATGAAAACCACTCACTAGGCAAtggctatatttaaaaaacataacttTTGGTCAGGTATGAGTAGCAGATGTTAGGTAGGAATTGGACTTCAGGAAGGGTGAAGGAGACTGAAACAACTCTTGAGTGCTTGCTAATGAGGAGAGAACATTTCCCATATGTCTCATGTCTCATATCTATGGCCTTTGTAGTGGTACTCACAGCTAAGCCTGTAGGATTACAGCATCACACCATTTGGTGTTTAAGATGCTCCAGCACTTGTACCACACATCTCAGCTAAAGTTCATTAGCCAACTGTCAAACAGTTGAAGAAGATGTGTTAAACTTTAGTAACACTAAGCAGTGTAGTGAAGTAACACTTGTGTGGAATGTGATGGAACAGTTGAAACTGGTTTACTTTTTGCACCAAATACATTGTTTAGGTTTTGCAGTTTGACtctatagccaaaagtttgggGACACCTAGCCCTCAATACCCATATGTGCTCTCCCTTTAACTTTATCTGCccctataacagcctccactctggGAGTGGGAAGGCTTTCtgcccattcagctacaagtgCATTAGTGAGGTAAGACACAGAGGTGAGGTGAAGGAGGCTGGTgtacagtcagcattccaattcatcccataggtgttcagtggggttgaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923880.2 True 2731 mRNA 0.45 7 4842459 4856152

Neighbor

gene id symbol gene type direction distance location
LOC113532696 man1c1,LOC108426368,LOC105006133,LOC106582899,LOC106605146,LOC107601975,LOC107713850 coding upstream 71843 4556125 ~ 4770616 (+)
slc9a1a slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107564092,LOC107552533 coding upstream 297112 4501487 ~ 4545347 (+)
dhdds dhdds,LOC106582847,LOC106605152 coding upstream 452998 4378023 ~ 4389461 (+)
si:dkeyp-97a10.2 LOC108256364 coding upstream 538929 4294369 ~ 4303530 (+)
LOC113532664 NA coding upstream 554229 4283288 ~ 4288230 (+)
myom3 myom3 coding downstream 8417 4864569 ~ 4918469 (+)
atp6v1c1a atp6v1c1,atp6v1c1a,LOC104937165,LOC102207943,LOC102305030,LOC100703061 coding downstream 152392 5008544 ~ 5019097 (+)
cep72 cep72 coding downstream 190814 5046966 ~ 5056667 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding downstream 240989 5097141 ~ 5105422 (+)
nkd2b nkd2 coding downstream 254921 5111073 ~ 5140807 (+)
G326429 NA non-coding upstream 38400 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 38948 4800572 ~ 4803511 (+)
G326374 NA non-coding upstream 185944 4649025 ~ 4656515 (+)
G326369 NA non-coding upstream 255137 4579550 ~ 4587322 (+)
G326359 NA non-coding upstream 299764 4542427 ~ 4542695 (+)
G326440 NA non-coding downstream 68026 4924178 ~ 4924636 (+)
G326458 NA non-coding downstream 127321 4983473 ~ 4983680 (+)
G326462 LOC108256729,LOC108426375 non-coding downstream 163630 5019782 ~ 5029790 (+)
G327071 NA non-coding downstream 685206 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 749718 5605870 ~ 5607099 (+)
LOC113532991 LOC108256125 other upstream 408208 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 447675 4391520 ~ 4394784 (+)
hamp NA other upstream 828921 4011380 ~ 4013538 (+)
G325435 NA other upstream 2272720 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 2627049 2204846 ~ 2215410 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 64828 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 68629 4924781 ~ 4930155 (+)
klf10 LOC108256604 other downstream 128263 4984415 ~ 4989316 (+)
acbd7 acbd7,LOC108256514 other downstream 455057 5311209 ~ 5314614 (+)
G326997 NA other downstream 476116 5332268 ~ 5338251 (+)

Expression


Co-expression Network