LOC113532508 (LOC108256086)


Basic Information

Item Value
gene id LOC113532508
gene name LOC108256086
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5228577 ~ 5234049 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923897.2
TCTTACCAAGTTGGTGACTTGAACAAAAAGATAAAATGGCAGCTGAAGAGATATACTCGGAAGAGGATCTCTCTTGTCCAGTGTGTTATGACATCTTCAGTGATCCTGTTGTCTTGTCATGTGCCCACAGCATCTGTAAAGAGTGTCTGGAATTATTCTGGAGAAGAAATGAATGTCATGTGTGTCCAGTGTGCAAACAGCCGAATCTACACGATCCTGTTTGTAACTTCGCATTGAAGAGTCTGTGTGAGGCTCACTTGGAGGAATACAGTCAGAGATATTCAGCACTCTCTGAACAGCACTGCAGCATACATGGTGAGCAACTTTACCTCTTCTGTCTGGAAGACAAACAGCCTGTATGTCTGACTTGCCAAACGTCTCAACAACACAAAGACCACGAATTCTATCCCATGGGTGAAGCTGCAGATCACTTTAGGAAGGTGCTCAAAACTGCACTGAAGCCATTACAAGAAAAGCTGGACCGCTTCAGTCAAGTGAAACAGTCTTACCACAAAACCACAACACACATTAAGAGGCAGGCCCAGAAAACAGAGCAGCAGATAAGGAACGAGTTTAAGAAGCTGTACCAGTTTCTACGAGTTGAAGAGATGGACAGATTACTTGCACTGCGACAAGAAGAGGAGCAGAAGATTCAGATGATAGAGGAGAAAATTGAAGAGATAAACAATGAGATATCATCTCTTTCGAAAATGATCAGAGCCATAGAAGAGGATATATGGACTGAAGATCTCTTATTCGTACAGaaCTTTGAGTCCTCAATGACAAGAGCTCAGTGCTCCTTGCAGGATCCACAGATGGTTTCAGGAGCACTGATTGATGAAGCGAAGTACTTGGGCAACCTGGCATTCAGAATGTGGGCGAAAATGAAGGACATTGTGCAGTACAGTCCTATCATTCTGGATCCCAACACCGCACACACATCCCTTACACTGTCTGATGACCTGACCAGCGTGACATTTGATGAAACCCAAGACATGACGCACCTTCCTGATAATCCAGAAAGGTTCGAAACAAGCGTGTGTGTCCTCGGTTCTGAGGGATTTGACTCAGGGAGCCACTGCTGGGACGTTGAGGTTGGGGATAGGAGTTTGTGGGAGGTGGGAATAACCCCAGAGTCTAATCTGAAAAATGGAGGGGTGTTTTATAGtggtgtgtggagtgtggagaATAATTGCGGGTTTTACACTCGCTCTCCTGCTCGGCCAAAGTCTCCCTTCTCTGCTGAGGGAGGACTCCAGAGAATCAGAATACAGCTGGACTGGGACAAAGGCCAAGTCTCCTTCTCTGACCCTGTCAATGACACTGATATCAAAATATTCAATCACACATTTACTGAGAAAGTCTATCCATTTTTCTGGAGTCACAGGAAGAGTTCTCCTGTTAAGATTTTACCCATGACCATTTTACCCATGACCATTCttgaaaatgaatgagtaaTGTAGGGTCTGACTGAAGGCCCTTAATCATCTGTTTAGCTAATGAAGAAAGACAGATTTGTAGAGAAACATGTCTGCATACACTGATAAACATGAGAACACAAGAGCGACTGCTAATGATTTTTGGTGCTTTAGTATTTTATACAGGAGAATTAAACCACAGAATTTTGATTACATTAAAAGCAGCACATGTGCATATGTCTTatcttctctctcctttttcttctttttgtaataaaagatttctcatgctttttttttctcatgccttttttctctccctgtttTAGGAATGGCTTTAATGGTTCAAAAAAAGtaactttatatatttctaaCAAGGTCCTTATTGTCTTTCAAAGACAATTTTTCAATAATTCAATACAGCTTCAAAATTATgattatacaataaaaaatgtgatGAGGATGAAATTGTGTAAACAATAAATTGAATTTTCAT
>XM_034297885.1
TCTTACCAAGTTGGTGACTTGAACAAAAAGATAAAATGGCAGCTGAAGAGATATACTCGGAAGAGGATCTCTCTTGTCCAGTGTGTTATGACATCTTCAGTGATCCTGTTGTCTTGTCATGTGCCCACAGCATCTGTAAAGAGTGTCTGGAATTATTCTGGAGAAGAAATGAATGTCATGTGTGTCCAGTGTGCAAACAGCCGAATCTACACGATCCTGTTTGTAACTTCGCATTGAAGAGTCTGTGTGAGGCTCACTTGGAGGAATACAGTCAGAGATATTCAGCACTCTCTGAACAGCACTGCAGCATACATGGTGAGCAACTTTACCTCTTCTGTCTGGAAGACAAACAGCCTGTATGTCTGACTTGCCAAACGTCTCAACAACACAAAGACCACGAATTCTATCCCATGGGTGAAGCTGCAGATCACTTTAGGAAGGTGCTCAAAACTGCACTGAAGCCATTACAAGAAAAGCTGGACCGCTTCAGTCAAGTGAAACAGTCTTACCACAAAACCACAACACACATTAAGAGGCAGGCCCAGAAAACAGAGCAGCAGATAAGGAACGAGTTTAAGAAGCTGTACCAGTTTCTACGAGTTGAAGAGATGGACAGATTACTTGCACTGCGACAAGAAGAGGAGCAGAAGATTCAGATGATAGAGGAGAAAATTGAAGAGATAAACAATGAGATATCATCTCTTTCGAAAATGATCAGAGCCATAGAAGAGGATATATGGACTGAAGATCTCTTATTCGTACAGACACCAGTAGGAGGAAGCTCATTGTGGTTTGCCACACATCTCTGGACTTTTCGTTGGTTGaaCTTTGAGTCCTCAATGACAAGAGCTCAGTGCTCCTTGCAGGATCCACAGATGGTTTCAGGAGCACTGATTGATGAAGCGAAGTACTTGGGCAACCTGGCATTCAGAATGTGGGCGAAAATGAAGGACATTGTGCAGTACAGTCCTATCATTCTGGATCCCAACACCGCACACACATCCCTTACACTGTCTGATGACCTGACCAGCGTGACATTTGATGAAACCCAAGACATGACGCACCTTCCTGATAATCCAGAAAGGTTCGAAACAAGCGTGTGTGTCCTCGGTTCTGAGGGATTTGACTCAGGGAGCCACTGCTGGGACGTTGAGGTTGGGGATAGGAGTTTGTGGGAGGTGGGAATAACCCCAGAGTCTAATCTGAAAAATGGAGGGGTGTTTTATAGtggtgtgtggagtgtggagaATAATTGCGGGTTTTACACTCGCTCTCCTGCTCGGCCAAAGTCTCCCTTCTCTGCTGAGGGAGGACTCCAGAGAATCAGAATACAGCTGGACTGGGACAAAGGCCAAGTCTCCTTCTCTGACCCTGTCAATGACACTGATATCAAAATATTCAATCACACATTTACTGAGAAAGTCTATCCATTTTTCTGGAGTCACAGGAAGAGTTCTCCTGTTAAGATTTTACCCATGACCATTTTACCCATGACCATTCttgaaaatgaatgagtaaTGTAGGGTCTGACTGAAGGCCCTTAATCATCTGTTTAGCTAATGAAGAAAGACAGATTTGTAGAGAAACATGTCTGCATACACTGATAAACATGAGAACACAAGAGCGACTGCTAATGATTTTTGGTGCTTTAGTATTTTATACAGGAGAATTAAACCACAGAATTTTGATTACATTAAAAGCAGCACATGTGCATATGTCTTatcttctctctcctttttcttctttttgtaataaaagatttctcatgctttttttttctcatgccttttttctctccctgtttTAGGAATGGCTTTAATGGTTCAAAAAAAGtaactttatatatttctaaCAAGGTCCTTATTGTCTTTCAAAGACAATTTTTCAATAATTCAATACAGCTTCAAAATTATgattatacaataaaaaatgtgatGAGGATGAAATTGTGTAAACAATAAATTGAATTTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923897.2 False 1914 mRNA 0.41 6 5228577 5234049
XM_034297885.1 True 1974 mRNA 0.41 7 5228577 5234049

Neighbor

gene id symbol gene type direction distance location
ncam3 NA coding upstream 25173 5190018 ~ 5203404 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding upstream 78350 5144970 ~ 5150227 (+)
nkd2b nkd2 coding upstream 87770 5111073 ~ 5140807 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding upstream 123155 5097141 ~ 5105422 (+)
cep72 cep72 coding upstream 171910 5046966 ~ 5056667 (+)
LOC113532857 NA coding downstream 2170 5236219 ~ 5240172 (+)
LOC113532629 LOC108256652,LOC108256651 coding downstream 7086 5241135 ~ 5248144 (+)
LOC113532776 LOC108256651 coding downstream 14861 5248910 ~ 5254552 (+)
LOC113532775 LOC108256159 coding downstream 20637 5254686 ~ 5258559 (+)
fam171a1 fam171a1 coding downstream 26389 5260438 ~ 5294743 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 198787 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 244897 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 303941 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 424518 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 425066 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 307309 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 371821 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 598944 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 608170 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1414231 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 239261 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 298422 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 304896 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 794326 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 833793 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 77160 5311209 ~ 5314614 (+)
G326997 NA other downstream 98219 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1989973 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2667466 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3138636 8372685 ~ 8378896 (+)

Expression


Co-expression Network