si:dkey-256h2.1 (LOC108256448)


Basic Information

Item Value
gene id si:dkey-256h2.1
gene name LOC108256448
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2616424 ~ 2626415 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923901.2
GTATAAATGCCGTCGTAAACATTCACCATGTAGGTTGTTTTGCTTTCACTATCactttgtgattaaaaaaaagggtgaGAGGAAGAACACATGTCAGTATGCTGAACTGTCTCTCAGCACGGACACTTGTGTGCTTTATTCTTTGCTGCTGTTGTGCAGTGATCAGTCACGCGGAGAAGAGCGTGACGCCCAAAGCCCGCGCGCGCGAGCGCTCAGGTTTACCCGGGTTTGACCCCGGAGACCCTGCTCCCCACTTCCGGGTTAAAACCCTGAACGGGGAGTTTGTTTATCCTCTCACAGAGACGTCCAAATCCTCCGTGATCATCCACGCGTTCACGAATAAATCCGCTTTTCTGGAGTGTCTCTGGACGTCCAACTCCTCCGTGTCCGACCTGATAGAGTTCCTTCCGGTCAGCGCTGAAATCCTCTTCCTGTCTCTGGATGATTCCGCGGCTCAGGATGCGCTGTGGATGAGAGAGCAGGTTTACAGGGTCGCCGCCGCCTCAgcgcacagGGGTAAGgaaattttatccaggcttcaTTTCTCCCCCATCCCTGTCTATGCTTTGGGAAACTGGATACCGAGAGTGCTCTACTCTTGGGGATGCGGCGGACACAACTGCGGTTTGGCGCAAGCGGTGTTCACTAGTCCAGAGTGGGAAGTTCCGGTGATTACCAAGCGCCTGAACGCCAGGTACGACTGGCTGAATGGCCGCTGGGAAAAAGTGCAGTATGTTCTTGTCGGGGCGGGTGATGGCTGTGAGCCCTTTCCTGCAGCTGCCGGAGCCGTGGCCTGGGTTTCTGAAAGCGGCTGCTCATTTTTCACTAAGATTAAAGCCATGGCAGATTCCAAAGCAGTAGGTGTGCTGGTTTACGCGTTACCTGGCAACCCAATCCAGGATATGAACTGCGCTGGAGATGAATGTAACACCACCCTGAACATTTCTGCTTCTATGGTGCACTTCGAGCCTGCAGTACATCAGGCGCTATTatCAGGGAAGCTGGTGAACGTGACGTTCCAGGTCACTCCATCACCCAACTTTTTTATTGCGATtgaccagcagggggcgctggCAGAAATGGGCTGGTTCCTGTATCCTACCTTCCGGTTCTTAAGCTGGCAGGCAGAGTGGTTTGACTTCAACGCCGACTTGCTGGAGCGTGTTAAACGTCCTGCTGCTGTCGTTCCTGTGTTTAATAACACGCTGATGCAGGGAGAGGCAGGAGCTCGGGCTGTGGTGAAGCTTCCCAAAGACTTGTTGGAGTTTGACGTGCTGGAGCTGGACGCGGCGTTGTCCTGTCCCGGCCGCAGGGACGAGACGTGCGCTCACTGGGATCACACGGTGCAGCTGTTCGTCTGCTGTGATCACTTCAGTCCTTACTGTAACATGGAGCTCGGTCGCTGGATCACCGCCTTCCGCAGaggaaCGGGCCGCTGGCTGACGGACGTGTCTCCGCTCCTCCCTCTGCTGAACAGCGAGCGCTGTGCTCTGGTCATGAAGACGCCGCCCTGGGCCATGCCCTGGCTCACATCCCTCAACCTGcgcttcagccacagcaactGCTCGGgaaacTCCTCTGCGATGCTTTACCCCTTCACGCTAACGTTTCTGTACAAGGGCGGAACCTTCGACAGGGATTACAACTCCAGATTTCAGGAGATCAAGTTCACGGTTCCACCTTCAACGAAAAAGGTGGAGCTGTACGCCGTGATCACAGGCCACGGCAGTGATGATAACAACTGCGGTGAATTCTGTGTGACGTCGCACTTCTTCCTCGTCAACGGCATCCACAACAATTCACTCACATTCGACTCTGCTGATTTGCCGCTGGGCTGCGCCATGCGCGTGGGTGAGGGGGCGGTGCCTAACGAACACGGCACGTGGCTGTACGGTCGCGCCGGCTGGTGTGACGGACTGCAGGTGGACCCCTGGAGGATCGATCTCACGCCACAGCTTGACCTGAGCGGTTCCAACACCATCCTCTACTTTGGACTCTACGACGGACGGAACCCCAATCCAACCAGAGACCCGGGCTACATCATCATGTACTcttatctcattttttataaGTGATTCCCGagaataaattaaacatgaaaacatttactgtacattttgaagtcatgaataaaacatttttttttaaa

Function

NR:

description
uncharacterized protein LOC110515712

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923901.2 True 2149 mRNA 0.54 12 2616424 2626415

Neighbor

gene id symbol gene type direction distance location
LOC113532793 NA coding downstream 5112 2607702 ~ 2611312 (-)
mios mios,LOC107671474,LOC107592481,LOC107592123 coding downstream 35401 2568991 ~ 2581023 (-)
zmp:0000000881 NA coding downstream 200018 2411801 ~ 2416406 (-)
LOC113532929 NA coding downstream 207082 2405670 ~ 2409342 (-)
mex3a mex3a,mex3b,LOC107688221 coding downstream 232021 2377478 ~ 2384403 (-)
sept7b LOC108256449,LOC108413590,LOC108441798 coding upstream 1236 2627651 ~ 2647474 (-)
cthrc1b cthrc1b,LOC108256451,LOC107726655,LOC107592186,LOC107688280,LOC105891862 coding upstream 30487 2656902 ~ 2668209 (-)
csmd3a LOC108256161,LOC107688260,LOC107671459,LOC105891721 coding upstream 53922 2680337 ~ 2918894 (-)
LOC117595760 NA coding upstream 409979 3036394 ~ 3045887 (-)
eif3ha eif3h coding upstream 485027 3111442 ~ 3140099 (-)
G325616 NA non-coding downstream 17845 2597279 ~ 2598579 (-)
G325373 NA non-coding downstream 215834 2400317 ~ 2400590 (-)
G325366 NA non-coding downstream 228866 2387309 ~ 2387558 (-)
G325343 NA non-coding downstream 243622 2348305 ~ 2372802 (-)
G325356 NA non-coding downstream 281773 2334452 ~ 2334651 (-)
G325774 LOC108256343,LOC108245987,LOC103040777,LOC108439298 non-coding upstream 549345 3175760 ~ 3240764 (-)
G325778 NA non-coding upstream 568428 3194843 ~ 3214451 (-)
G325779 NA non-coding upstream 572812 3199227 ~ 3201250 (-)
G325780 NA non-coding upstream 582791 3209206 ~ 3237328 (-)
G326133 NA non-coding upstream 1195490 3821905 ~ 3878517 (-)
G325145 mtmr11 other downstream 518989 2088259 ~ 2097435 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 1047918 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 1165424 1403264 ~ 1451000 (-)
G324748 NA other downstream 1245395 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 1274353 1294865 ~ 1342071 (-)
LOC113532533 LOC108256344 other upstream 603606 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 693129 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 1094274 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 1331082 3957497 ~ 3966115 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 1682191 4308606 ~ 4347253 (-)

Expression


Co-expression Network