rnf144b (LOC108256380,LOC108440759)


Basic Information

Item Value
gene id rnf144b
gene name LOC108256380,LOC108440759
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5565646 ~ 5583027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923902.2
aggaggaggaggaggaggagaagccGGAAGTGGTGCGCGAGCAGATCCGTGAAGACGCAGCGCACCTTTCGGCATCGGAGCAGAGAAGAGTCGCTCACAGGACCAGGAGGAAAGGACAGGACAGACTGGACGTGCTCCAAACTGAAGAAAATGGAGGACATCACTCCATTATTTCTCAACCTGAGGGACtgaacaacagcagcagcagcatggcCGATGCCTCAGACTCCTCCATCCAGACAGCAGAGGCCATGGTTTATTGCAAACTGTGTTTGACTGACTGTCCTGCACCAGAGACGAGCACGTTGCGCTCCTGTGACTGCGTGTTCTGTACCCAGTGCTTACGTCAGTATGTGCAGCTGGCCATAAGGGACGGGGCTGGCACCCCCATCACCTGCCCTGACGTGGCCTGCAAGCACCCTGGAGCTCTGCTGGATTCTGagATTGCCGCTTTTGCCTCTGGTGAACAAGTCAAGTTCTACCAGCGGCTCAAATTTGAAAGaggtGTTCAGTTGGACCCATGTAAGGCCTGGTGCCCGGTGCTGGAATGTCAGGCCGTTTGCAGTGTGAACCCTGGTACTGAGGGTAAACCGGTGCCCGTTCCCTGCCCAACATGCCACGGTGTCTTTTGCTACGCCTGCAAAGAATTATGGGAGGATGGACACAGCTGCCAACAGCACCAGCCTCTAGTGGTGCTGCCTGCCAATGACAGTGCTCAGGCCAGTGCGGACCCAGACCCAGTCATCAAACAGTGTCCCAAGTGCGGAGTCTACATCGAGCGCAACCAGGGCTGTGCTCAAATGTTGTGCAAGAGCTGCAAACACACTTTCTGCTGGTACTGCTTGCAGAATCTAGATGGGGACATTTTCCTGAGACACTATGATAAAGGTCCCTGCCGTAATAAGTTAGGACATTCCAGAGCTTCTGTCATGTGGAACAGGACACAGGTGGCAGGCATCCTGGTGGGCGTGAGCATCATCGTGGTGGTgacatctcctctgctgctctTAGCCTCTCCGTGCATCCTGTGCTGCGTGTGCAAGCCCTGGCACAGGAGGAacgagaagaaaaagaagaaaaagccaACAAAAGAGACAAAGGCAACAGATTTGGCAGTGTAATGTCTTCTCTAAACCACCGCTcttgtatacagtactgtatttccTGCAGTCCTCCATCTGCAGTACTGTAGCGCTCTCACATGCCAAAAACCTGTGTTGTTCAGCCAGGCGCTAAAGTGCCTCATTTCTCCAGTGCCTGGTGTTTGGTGGTCTTTCTTTCGCCTTCCATTGTATTATGCAAAAATATTCAACATCAAGAAAGGAACACACATCCATGGCCTGTTTTCAATCCATGCAAAATATATGTTAATGTATTGCCATGGAAGTTGTgttttatattgtgtttaaGGAAAATGATGACAGGGCTTTAACTGTAACCAGTATATATATGCTACATAAAGTTAGTTCTATAGATTTGATTGATTTCCCTTTGGGTTCCAGACAACAGGTTCTGATGGGTGTCTGTTTCACctactgtaatgtgtgtatataatgtgtgtatgaatgtggaTGCTGTcttgtgtttttacattttctgttaaCTTTTTGGCATCGGATATTTTGTATTACaccataacaataaaattaatatgAGGTA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF144B

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11975 RNF144; E3 ubiquitin-protein ligase RNF144

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923902.2 True 1659 mRNA 0.49 8 5565646 5583027

Neighbor

gene id symbol gene type direction distance location
ccdc127a ccdc127 coding upstream 12342 5550225 ~ 5553304 (+)
mrpl32 mrpl32 coding upstream 17813 5546551 ~ 5547833 (+)
adam22 adam22,LOC107719137,LOC107714333 coding upstream 72907 5415932 ~ 5492739 (+)
dbf4 dbf4 coding upstream 154596 5400933 ~ 5411050 (+)
rundc3b rundc3b,LOC107666772 coding upstream 179020 5356182 ~ 5386626 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding downstream 1389 5584416 ~ 5591733 (+)
sqlea sqle coding downstream 10822 5593849 ~ 5603013 (+)
si:dkey-122a22.2 LOC108256697 coding downstream 213135 5796162 ~ 5905417 (+)
dpys dpys,LOC107686378 coding downstream 483106 6066133 ~ 6084254 (+)
zgc:101716 LOC108256737 coding downstream 721554 6304581 ~ 6312558 (+)
G327071 NA non-coding upstream 23757 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 535856 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 581966 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 641010 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 761587 4803837 ~ 4804059 (+)
G327178 NA non-coding downstream 22843 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 249966 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 259192 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1065253 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 1366532 6949559 ~ 6961376 (+)
G326997 NA other upstream 227395 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 251032 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 576330 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 635491 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 641965 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1640995 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2318488 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2789658 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2805160 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 3032046 8615073 ~ 8665836 (+)

Expression


Co-expression Network