ccdc127a (ccdc127)


Basic Information

Item Value
gene id ccdc127a
gene name ccdc127
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5550225 ~ 5553304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923952.2
GAAGTCTGTTTTGCGTTGGTTGCGTAAATAACGTTCAGAGCGTAACACTGCGCGGAGCTGAGCGCACCTTGAAGAAGAAACAGTACGTGAGTGTTTAGTGCTATTTCTCAAGACTATCTCCATGAACAACCTGAATGATCCTCCTGGATGGAATATAAGGCCAGTGCCACATGAGGGTCCTGATGGGGGGAAATGGAACTACGCTCTGTTAGTGCCGATGCTTGGCCTTGCGGCCTTTCGTTGGATCTGGACACGTGAGTCACAGAGGCAGATCCAAGAAGCAAAAAGCCAGTTCGAGGGGGACGTGGCTGCCGTTGCCAAAGACCTGGAGCTCAAGTATAAAGATACGCTGACGGAGAACCGGCGCACGACCGCCCTCCTGGAGCTGGAGCTAGAGAAAGCGCGTCAGCGGGTGGAGGGCTACAAGAAGGCCCTGGCCTCTCAGAGCCAGCATCTCCTGGAGGAGCGCAAGCAGCTGCATAAGGAACGTGAGGAGctagaggaggagaagaagcgTGCTCTGCAGACTGGAGCAGCTGGACTGGCGCTTGATGCGGCTCTGCAACAGGAGGAGGACTGGCAGCAGAGAGCCCAGGTTTTGCTACAGGACCTGGAGCACCAGCTGGTGGAGAGGCAGAACGCCTTCTGCAGCCTCCTGCTGCCTAGGAAACACaggatggagatggagaaagatCTGCTGCTCAGGGTAGTCAAGAACCCGGTGGGGGCGGAACTGGGGCTGGAGGATGACATCagggacatttttaaaaatgataggCACTGCGCAGACATGATGAATATGGACAGGAGGAAAAATGGGAAGCTGATGTGGCTGTATCTTAAATACTGGAGGCTGCAGGTTACACTGCAGAAACACAAGAGAGCAGAGGACAGGTTGAAAGGATCGCTGCCTGATGTCAAGTGAAggaaatttagaaaaatatagTAGTTGCTTTTAACCCCGTGATACGTCAATAGTGTGTGGCAATACTCATGGTTTGCACCAatgcatatgtatatacagattagcaaattaaaggaaaacaatgGTGGCACCATGTTTCTGgtgtccacttgtccccttagagtgAAGCATCTATTTAAATCAATACACAGTTTTGATCTGAATAGATGCTTCACCTTTATCCACGATGAACCCGTCTCTATCCACACAGTACAAGTAAATGGTTGATGAAAAgcaaaatgatataaatcatatgctCTGGCCTTCTCAGTCAATACATCTCAAGCTacttgaacacctatgggagattttggagtgacacACACCTCCCTTGCACTGCGCTCTCctacaccaccaccatcataaAAACACACCACCTGAGGGAAAACCTTTAGGAAGAACAGTCTTCATCACTCTGGTACATTTCCAGAGACTTGGAGAATCTATGACGTGGTGCACTGAAGGTGTTCTGGTGGCTCATCATgacccaacaccttactaagacactcttctttaatttgtcatccgTCTGTATGTTTCCTTAACTTTGTCTAGTCAAgcacatttatgacatttttttggGATGAGACTACTAAACCTACTGAcaatcatttgaaaataatgCTGCTTCTGTGAGTGTATAACATCTTTTCTGTTATTCAGCATGAAATTATAGCTGTTTCACCTGGACTTTTTTATTCCTACAGATATAAAGCATCCCTGTAAtgataaaataaagttaaaaaattaaaatgttctgtTCCAGGTAAAA

Function

symbol description
ccdc127 Predicted to be integral component of membrane.

NR:

description
coiled-coil domain-containing protein 127-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923952.2 True 1736 mRNA 0.46 3 5550225 5553304

Neighbor

gene id symbol gene type direction distance location
mrpl32 mrpl32 coding upstream 2392 5546551 ~ 5547833 (+)
adam22 adam22,LOC107719137,LOC107714333 coding upstream 57486 5415932 ~ 5492739 (+)
dbf4 dbf4 coding upstream 139175 5400933 ~ 5411050 (+)
rundc3b rundc3b,LOC107666772 coding upstream 163599 5356182 ~ 5386626 (+)
crot crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792 coding upstream 219011 5317198 ~ 5331214 (+)
rnf144b LOC108256380,LOC108440759 coding downstream 12342 5565646 ~ 5583027 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding downstream 31112 5584416 ~ 5591733 (+)
sqlea sqle coding downstream 40545 5593849 ~ 5603013 (+)
si:dkey-122a22.2 LOC108256697 coding downstream 242858 5796162 ~ 5905417 (+)
dpys dpys,LOC107686378 coding downstream 512829 6066133 ~ 6084254 (+)
G327071 NA non-coding upstream 8336 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 520435 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 566545 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 625589 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 746166 4803837 ~ 4804059 (+)
G327178 NA non-coding downstream 52566 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 279689 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 288915 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1094976 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 1396255 6949559 ~ 6961376 (+)
G326997 NA other upstream 211974 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 235611 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 560909 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 620070 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 626544 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1670718 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2348211 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2819381 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2834883 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 3061769 8615073 ~ 8665836 (+)

Expression


Co-expression Network