cd79a


Basic Information

Item Value
gene id cd79a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7649591 ~ 7656996 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923969.2
AATATCAAAGTGTCAACAGACATCAGGAGGCCATTTTATTGCACCTGTTTGCTCAACTTCATAGACGATGGAGGCAAGACTCGTCTTCTTGTTCAGTCTCTTCGCAGTTGCTGCTGATGCTACCAatcctcttaaaataaaactgtggtTTGACCGTCCTGGCTTACGACTCGCCATCTCAAAGAGAGCCAATATGAAGTGCTGTTACATCTGCCAGTTTGATGTTGAAGTTAAATGGACACAGACTGTTATGACTTCCAGCAACACAAGTACGATTACGCTTGTGAATCAGTCAAATGAACGAGTGGAAATTCGCAAAGAAGTAGAGAAGGATAAGGAATGCTCAAATCTGGTGCTAAAAGACATTGAGCTGAATGATACAGGCCTGTATCAATGCCTTCTAACAAAATCAAACCACACTGTCTATACACCCGGCACCTATTTACAAGTATACGAGCCCATACAGATGATCCTGGACATCAGTGAGAGGAGTAAGAACAGCCTCATCACTGCTGAAGGTGTTCTCCTGCTGTTGTTTGTGCTGCTGCCTGGCATTATGCTCATCTTCAAGACAAAGGGCTTGAATCAGCTGGAGAAAAGAAAGGgcaaagaggaagaaaatattTATGAGGGTCTAAACCTAGATGAATGCAATTCCACATATCATCAAATCCAGCGCTCTCTCGTCCAAGGACCATACCAGGATGTGATCAACAATGACGAAGATGACATTCAGCTGGAGAAGCCCTGAATGGGTGGCTGTGAGGAGTCAGGATCCATGCCATACAAATACATAGTGTAGCTCTATCGCTAATGTTTGCTTTGTCTGTTGTAGGTATAAATTAGGGGTGTAACCAGTTATGAATAtgttattcagattgaacagataatgcatcCCAgatgaatacagatacaaaacACAGGTGGAgtattcagggtttttttttaagaaagcttgccagtTTCAGGGACTGAGATTGTGAggttttttactttaatgtctAGCTTTATAGAACAACTCACTGAAGGTCATGGGGAGGGTTGCCAAGTTTCAGCAAAGTTCCCAACCCAACTACAACTCAAAATCCACACAAATAGACTTGAAACTTTGGTGGTAACAAGTTAACAGTGGTACACTTTCCTGATttgcagtatacagtatatctgcaaTACGTGAATAATATACGtggaacctggcaaccctgctcacataactaaaataaaaaacaagcaagTTCACTAACATGATACAAATGAGAGATGAACTATTCCATTTTAGCTCGACGGCCTTACTGAGtgccaaaataaaaccacatttctactatatttttgtagaaacaaaagaaatatactTTCATATATTTAATCGCTCCTTCATAGAGCTCAATCAGACTGCACGCTGTGCACAGGGTAGCATATCTCTGTGGGGCTATctgcaaaaataatcatttaattcattttaaaaacaacgtagaactttttctacatttattgcatgtgtttttttctgttattcttAAATGATTGTTTCtcatcattattaaaagaaaatcatacaggcattataatgaaatggtgcttaaaggaccccattttgactCACAGCAGCACTGTGATTGTGTCCTATTTTTAGCATACattctttctggaatgtaacaaacccaaaaacccaaaagcaaatattaatagaaagatagaaagatagaaagcttgccagaaagctCCACAGGATATCTGCTTCAGGAACCGAACTGAATAAAGTTAAGTTCTGCAAATGATTTTTAGTGGATCTATAGTATAGTTGTAGGAATAACATAAAAACAGACCACTCCCACTTCCGGTTTAAATCTTTATACAAGcagttatgaatattttgagcactaaacagatacagatacagataatgacattgtgttacacccctagtataaatatgtaaatattaactggaagcaggaaataaaaaaatctttgcttGCTTAGTTAACCAGATTTTATTACCATTACACAATATGTCTTCATAGCTTTGGTATAAGGAACAAAAATCACTGTGTTAAAGTTTAGTACTATAAAActcataaaaatttaaaatggaaagTGACTCATCATGATTTTAATTTGACAGATGTATACTAGattatgtctttttttaggCTAAAGATATTATAAAAAGACATGGGATTAGGTAGATGTATGAATCAGTTGGTTGAAAATTCCATGAAGggatttataattataaattataattctCATAAAGGAGAAAGTGCAGCAAAGCTTGTGGTTCTGCAGGAGGAAGGCTACTAGCTATAGTAgagtatatgtatatttattcagCAGTTAGCTCTGGTCCAGCCacgctgatattcagtacaacagcacacaTGCTCGTGCCATATTGCTTAAACAGATAGCTcaattgtgtttgtgtgtaaagcttttaataaaga

Function

GO: NA

KEGG:

id description
K06506 CD79A, IGA; CD79A antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923969.2 True 2447 mRNA 0.37 5 7649591 7656996

Neighbor

gene id symbol gene type direction distance location
lipeb lipe coding downstream 2748 7620701 ~ 7646843 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding downstream 34646 7587193 ~ 7614945 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding downstream 80985 7453874 ~ 7568606 (-)
nr4a3 nr4a3 coding downstream 339579 7279561 ~ 7310012 (-)
stx17 stx17 coding downstream 380784 7248388 ~ 7268807 (-)
arhgef1b arhgef1 coding upstream 2182 7659178 ~ 7702791 (-)
erfl1 LOC108256284,LOC108431014,LOC103032681,LOC107596612,LOC107706551,LOC107699460 coding upstream 54520 7711516 ~ 7762163 (-)
LOC113532988 LOC108256699 coding upstream 169011 7826007 ~ 7832633 (-)
megf8 megf8,LOC107593670,LOC107687796,LOC107657710 coding upstream 179664 7836660 ~ 7884713 (-)
LOC113532661 NA coding upstream 270735 7927731 ~ 7931036 (-)
G328586 NA non-coding downstream 84399 7561326 ~ 7565192 (-)
G328589 NA non-coding downstream 90628 7558684 ~ 7558963 (-)
G328588 NA non-coding downstream 90942 7558395 ~ 7558649 (-)
G328580 NA non-coding downstream 140484 7508869 ~ 7509107 (-)
G328562 NA non-coding downstream 197474 7450397 ~ 7452117 (-)
LOC113533080 NA non-coding upstream 123044 7780040 ~ 7799385 (-)
G328798 NA non-coding upstream 246646 7903642 ~ 7903887 (-)
G328864 NA non-coding upstream 387987 8044983 ~ 8045597 (-)
G328908 NA non-coding upstream 476687 8133683 ~ 8133887 (-)
G328942 NA non-coding upstream 555760 8212756 ~ 8215254 (-)
sec61b sec61b,LOC102796100 other downstream 263244 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 587163 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1266003 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1671212 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2672064 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 2494501 10151497 ~ 10156800 (-)
G330185 NA other upstream 2865736 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3266130 10923126 ~ 10930775 (-)
G330379 NA other upstream 3425272 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 4287058 11944054 ~ 11996700 (-)

Expression


Co-expression Network