sycp2l (sycp2l,LOC108261788)


Basic Information

Item Value
gene id sycp2l
gene name sycp2l,LOC108261788
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9510608 ~ 9562189 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923975.2
ttatttaaaaatatgtaccTACAGTCTTCCCTTTTCAGCCCCTACCAACTGTAATTCTGTGATTATGCCCGTCCTTTCAAAGAAATTCATGCAGTTGTttgctgtgtttaatttttgcatTAGGCAAATTCCAACCTCTACTGAATGACCTAAAATTTGTACAGGAAGCTGCcatcggaaaaaaaaaatcacctcacaTTTAAGCCCCAAAACACTTTAACCACGTGCACGTGGCGCCATTGCTCTCAAATAGAGCGCACCTGTGTCCGTTTGTCTGTTGCGAGGTCTTCAGTTCGGAAATTATGAGTCTTTCAAGCAGACTGGAGGTTGCACTCGCCACCAACAATGTTACTTcagtttttcaatttattaCTGGGGAGAAATCAATGTCTCTGATCGACCAACTGGATGACGTTGCATGCAGGGATTTGcataaaaatgaattcaaaaatGTTACACTGATATTACGGGCGCTTGAACAAGTAATCTCCAAAGACGAAGACTGCATCAACCAACTGGTCTGTCAGGGGTTATTGGTCAAGATGTTAAATTGGTTTGAGATGGTTTGTGAGCATCTAAAGGTGCAGCAGAAACCAAACAAGGCTCCAGTGCGGCTCATGGAAGCGTTCTGTGAAGTGTCGATGaggcTTTGCCAGAGCAACGCTGAAGGCAGCATTAAGATTTTGGAGATTCTTATACTGAGGTTTGGAGCTGTTGTGATTGACCAAGATGTACATTTCAATCTTCGTCTAGAGGCCATTAAGacaataaattcaatgctggaCAGTGCTTCAAAAGAAACTCGTAAAAAAATATGTCAGTCTGATCATAGTTCTCTGCTaGAGGAGTTTGCTAAAGTGATAATTGATGTTGGTGattACGAAATGCAGGTGGCCATTTCTGAGGCACTCTGTCGGATGACACCAAAGAAACTAAGGGAGGAATTGGTTAGCAAGTGGTTCAGCTACAGAAGCTTTGCTTCAACTTTCACAACAATAAGGGTTAAAGAGTTTGAAACGGATTGTAGGATATTTCTGAATGAACTCAACAGCTATTTTGGGAGCTCAAGAAGagtgttttcaTATCCTTGCATAAGGGCTTTTTTAGACACCACTGAGTTGTTTAAACCTGAGGATGAACTCTTGCAGAACTTCTGGATAGACTTCAACATTGGGACATCTTGCATTGGCTTCTATGTAAATGACCCACAAGAAACCCTGTGGGAACTTATTCATTTGCCTAAAGAAGCTGTCAGTTCATACAACCTACAAGAATGTGATAATCAGAAGATCTTGAGCATTCAcatgtcacttcctgtgtgtcATGGAAAGATCACTGGGAAAATGGTGCAGGTTACCTTTGACTCTAGGCATGATATTCAAACTGCTGTGAACAAAGTCTATGCTGGCAGAGATGAATTACAGCTGCTAGAGACAACAAAGCATACTGTATTTAGTCAGGAAGACTCAGGAATTCCAGCTACTCCGACTGAAATTAAACAGACATTCATGAGtcCTTCTATCACAAAGGCTACAAGAAGAGCTCAAGGTTCTTTTGCTCTTCAGAGTGGGCCTGGGAAACTGCCATCACACAAATGTAGGACATTCCCAACAGAAGACAAATATTCTCTAAACACCACCATAAATGGTTCAGACACAGAGGTGGCACAGGCTAAAGCTGTTGTCTTTAGTCAGTCTGTCTCCTCTAATGGgtCTGTCAGTTCTGTTAAGTCCTTTCCATCTGCAAAATCTACACAAAAGagGAAAATTAGGATCTTTCACTCTGAAAGTGACAGCTGTCTGTCACCTGGTGAGAGATCTTTGCTCAGACACAAACTTCAATGTGACTacacaaggaaaaaaacacgGCTGAAAAGTAAACTCAAAGTTCTCCCACTTTCCTCACCAAGTAGCAATGAAGAGAAGTACTTTAAGGAATCCACTCCTAAATACAGaccggagagagagaggggtgaaGGAATGGCTGGGAAGCAGAATCTGGATCTTTCCCACCAACCCAAGAAGTCCATTCTGGATTCAAGGTTTCAAGACAAGACAATTCTTGAAGATTCTGTCTTCACAGAGGTGGAACCTGTTGGATCTATTGAGGTAGACAGTGTAGACAAAGTACCATCTATGCCATCAGACAGAAGACTACTGGCATCGGCAGAATTGAATGTGGGTTGTGATGTTGGAGGAGAGGAGCAGCTCTCATTCTCTACACTCAAACCCAGAAAACTTTCTATCTCCCCCTCACTGGAGAGAGCTAAGGaagcAATAACCCAAGCATTGATGGAAGATGAAGAATCTGAGGCAGAGTTGAGTTCTGGAGTCATGGCTGCCTTTGATTCCTTTAAAGCTCAGCTTAGAGAACACTTCTCTGTAAGGTATAAGAAGACCGaaacaaagtcactgagatcattgACTGACTGCCAGAAATCTGTATCCTCTTTGCTAAAAACAGTGCATGATCAAAGGCTTATTCATTTGGAATGCTTCCAGAACGCTGTAGTGCAGCAGCTGGGTCAACTGGAACAGAACTGTCTTTCCTTAAAGAACATTGAGAGAGAAACTGTGGGTTTTTGGCGGTCGGTGTCTGATACAGTGAAAGCGTTCTGTAATAAACAGCAAAAGAGGTTGGATTCTCTAGAATTACTCAGAGGGGGGGTCCAAGCGCACCAGACAAAAGCAGAGGAAACAGAAGCAATGCCTAGCATGTCCACAGCAGTTCCAGTTGCTGAgaccaaaaataaattaagagaTTGAAAATTTTATCCAACGACCACAGATTCCAGCTAGAAACCACACATAACTATTAAAACCATTATTAGCATTGCATaagtgaaatatttgtgaatTGTATGACTTGTATTCAAATGTATTATCTTTATATCAATTtatatgtttacatgcaaataCAATTTGTTTAAATCTTGTTACATAATGTGTGAAAAAATCTAGTGAAGACAAGCATGCACAACTAAGTGACATTTACCTTGTCTTGTAATGGGGGGAAAAGGTATTTTTCTTGCGACACATTTTGCATCCCATTATAAGAAGACTGTAGACTCTGAAAGTGTGGCAATTAAAAAAGACTCAAACTCAAA
>XM_034298194.1
attatttaaaaatatgtaccTACAGTCTTCCCTTTTCAGCCCCTACCAACTGTAATTCTGTGATTATGCCCGTCCTTTCAAAGAAATTCATGCAGTTGTttgctgtgtttaatttttgcatTAGGCAAATTCCAACCTCTACTGAATGACCTAAAATTTGTACAGGAAGCTGCcatcggaaaaaaaaaatcacctcacaTTTAAGCCCCAAAACACTTTAACCACGTGCACGTGGCGCCATTGCTCTCAAATAGAGCGCACCTGTGTCCGTTTGTCTGTTGCGAGGTCTTCAGTTCGGAAATTATGAGTCTTTCAAGCAGACTGGAGGTTGCACTCGCCACCAACAATGTTACTTcagtttttcaatttattaCTGGGGAGAAATCAATGTCTCTGATCGACCAACTGGATGACGTTGCATGCAGGGATTTGcataaaaatgaattcaaaaatGTTACACTGATATTACGGGCGCTTGAACAAGTAATCTCCAAAGACGAAGACTGCATCAACCAACTGGTCTGTCAGGGGTTATTGGTCAAGATGTTAAATTGGTTTGAGATGGTTTGTGAGCATCTAAAGGTGCAGCAGAAACCAAACAAGGCTCCAGTGCGGCTCATGGAAGCGTTCTGTGAAGTGTCGATGaggcTTTGCCAGAGCAACGCTGAAGGCAGCATTAAGATTTTGGAGATTCTTATACTGAGGTTTGGAGCTGTTGTGATTGACCAAGATGTACATTTCAATCTTCGTCTAGAGGCCATTAAGacaataaattcaatgctggaCAGTGCTTCAAAAGAAACTCGTAAAAAAATATGTCAGTCTGATCATAGTTCTCTGCTaGAGGAGTTTGCTAAAGTGATAATTGATGTTGGTGattACGAAATGCAGGTGGCCATTTCTGAGGCACTCTGTCGGATGACACCAAAGAAACTAAGGGAGGAATTGGTTAGCAAGTGGTTCAGCTACAGAAGCTTTGCTTCAACTTTCACAACAATAAGGGTTAAAGAGTTTGAAACGGATTGTAGGATATTTCTGAATGAACTCAACAGCTATTTTGGGAGCTCAAGAAGagtgttttcaTATCCTTGCATAAGGGCTTTTTTAGACACCACTGAGTTGTTTAAACCTGAGGATGAACTCTTGCAGAACTTCTGGATAGACTTCAACATTGGGACATCTTGCATTGGCTTCTATGTAAATGACCCACAAGAAACCCTGTGGGAACTTATTCATTTGCCTAAAGAAGCTGTCAGTTCATACAACCTACAAGAATGTGATAATCAGAAGATCTTGAGCATTCAcatgtcacttcctgtgtgtcATGGAAAGATCACTGGGAAAATGGTGCAGGTTACCTTTGACTCTAGGCATGATATTCAAACTGCTGTGAACAAAGTCTATGCTGGCAGAGATGAATTACAGCTGCTAGAGACAACAAAGCATACTGTATTTAGTCAGGAAGACTCAGGAATTCCAGCTACTCCGACTGAAATTAAACAGACATTCATGAGtcCTTCTATCACAAAGGCTACAAGAAGAGCTCAAGGTTCTTTTGCTCTTCAGAGTGGGCCTGGGAAACTGCCATCACACAAATGTAGGACATTCCCAACAGAAGACAAATATTCTCTAAACACCACCATAAATGGTTCAGACACAGAGGTGGCACAGGCTAAAGCTGTTGTCTTTAGTCAGTCTGTCTCCTCTAATGGgtCTGTCAGTTCTGTTAAGTCCTTTCCATCTGCAAAATCTACACAAAAGagGAAAATTAGGATCTTTCACTCTGAAAGTGACAGCTGTCTGTCACCTGGTGAGAGATCTTTGCTCAGACACAAACTTCAATGTGACTacacaaggaaaaaaacacgGCTGAAAAGTAAACTCAAAGTTCTCCCACTTTCCTCACCAAGTAGCAATGAAGAGAAGTACTTTAAGGAATCCACTCCTAAATACAGaccggagagagagaggggtgaaGGAATGGCTGGGAAGCAGAATCTGGATCTTTCCCACCAACCCAAGAAGTCCATTCTGGATTCAAGGTTTCAAGACAAGACAATTCTTGAAGATTCTGTCTTCACAGAGGTGGAACCTGTTGGATCTATTGAGGTAGACAGTGTAGACAAAGTACCATCTATGCCATCAGACAGAAGACTACTGGCATCGGCAGAATTGAATGTGGGTTGTGATGTTGGAGGAGAGGAGCAGCTCTCATTCTCTACACTCAAACCCAGAAAACTTTCTATCTCCCCCTCACTGGAGAGAGCTAAGGaagcAATAACCCAAGCATTGATGGAAGATGAAGAATCTGAGGCAGAGTTGAGTTCTGGAGTCATGGCTGCCTTTGATTCCTTTAAAGCTCAGCTTAGAGAACACTTCTCTGTAAGGTATAAGAAGACCGaaacaaagtcactgagatcattgACTGACTGCCAGAAATCTGTATCCTCTTTGCTAAAAACAGTGCATGATCAAAGGCTTATTCATTTGGAATGCTTCCAGAACGCTGTAGTGCAGCAGCTGGGTCAACTGGAACAGAACTGTCTTTCCTTAAAGAACATTGAGAGAGAAACTGTGGGTTTTTGGCGGTCGGTGTCTGATACAGTGAAAGCGTTCTGTAATAAACAGCAAAAGAGGTTGGATTCTCTAGAATTACTCAGAGGGGGGGTCCAAGCGCACCAGACAAAAGCAGAGGAAACAGAAGCAATGCCTAGCATGGTGAGTCTTGAAGGCAGGGGAGTTTGCTGCATTGCTGTGTTGGACTTCTGAGCGGAAGgttgttcaaatcccagcaccgccaagc
>XM_034298195.1
ttatttaaaaatatgtaccTACAGTCTTCCCTTTTCAGCCCCTACCAACTGTAATTCTGTGATTATGCCCGTCCTTTCAAAGAAATTCATGCAGTTGTttgctgtgtttaatttttgcatTAGGCAAATTCCAACCTCTACTGAATGACCTAAAATTTGTACAGGAAGCTGCcatcggaaaaaaaaaatcacctcacaTTTAAGCCCCAAAACACTTTAACCACGTGCACGTGGCGCCATTGCTCTCAAATAGAGCGCACCTGTGTCCGTTTGTCTGTTGCGAGGTCTTCAGTTCGGAAATTATGAGTCTTTCAAGCAGACTGGAGGTTGCACTCGCCACCAACAATGTTACTTcagtttttcaatttattaCTGGGGAGAAATCAATGTCTCTGATCGACCAACTGGATGACGTTGCATGCAGGGATTTGcataaaaatgaattcaaaaatGTTACACTGATATTACGGGCGCTTGAACAAGTAATCTCCAAAGACGAAGACTGCATCAACCAACTGGTCTGTCAGGGGTTATTGGTCAAGATGTTAAATTGGTTTGAGATGGTTTGTGAGCATCTAAAGGTGCAGCAGAAACCAAACAAGGCTCCAGTGCGGCTCATGGAAGCGTTCTGTGAAGTGTCGATGaggcTTTGCCAGAGCAACGCTGAAGGCAGCATTAAGATTTTGGAGATTCTTATACTGAGGTTTGGAGCTGTTGTGATTGACCAAGATGTACATTTCAATCTTCGTCTAGAGGCCATTAAGacaataaattcaatgctggaCAGTGCTTCAAAAGAAACTCGTAAAAAAATATGTCAGTCTGATCATAGTTCTCTGCTaGAGGAGTTTGCTAAAGTGATAATTGATGTTGGTGattACGAAATGCAGGTGGCCATTTCTGAGGCACTCTGTCGGATGACACCAAAGAAACTAAGGGAGGAATTGGTTAGCAAGTGGTTCAGCTACAGAAGCTTTGCTTCAACTTTCACAACAATAAGGGTTAAAGAGTTTGAAACGGATTGTAGGATATTTCTGAATGAACTCAACAGCTATTTTGGGAGCTCAAGAAGagtgttttcaTATCCTTGCATAAGGGCTTTTTTAGACACCACTGAGTTGTTTAAACCTGAGGATGAACTCTTGCAGAACTTCTGGATAGACTTCAACATTGGGACATCTTGCATTGGCTTCTATGTAAATGACCCACAAGAAACCCTGTGGGAACTTATTCATTTGCCTAAAGAAGCTGTCAGTTCATACAACCTACAAGAATGTGATAATCAGAAGATCTTGAGCATTCAcatgtcacttcctgtgtgtcATGGAAAGATCACTGGGAAAATGGTGCAGGTTACCTTTGACTCTAGGCATGATATTCAAACTGCTGTGAACAAAGTCTATGCTGGCAGAGATGAATTACAGCTGCTAGAGACAACAAAGCATACTGTATTTAGTCAGGAAGACTCAGGAATTCCAGCTACTCCGACTGAAATTAAACAGACATTCATGAGtcCTTCTATCACAAAGGCTACAAGAAGAGCTCAAGGTTCTTTTGCTCTTCAGAGTGGGCCTGGGAAACTGCCATCACACAAATGTAGGACATTCCCAACAGAAGACAAATATTCTCTAAACACCACCATAAATGGTTCAGACACAGAGGTGGCACAGGCTAAAGCTGTTGTCTTTAGTCAGTCTGTCTCCTCTAATGGgtCTGTCAGTTCTGTTAAGTCCTTTCCATCTGCAAAATCTACACAAAAGagGAAAATTAGGATCTTTCACTCTGAAAGTGACAGCTGTCTGTCACCTGGTGAGAGATCTTTGCTCAGACACAAACTTCAATGTGACTacacaaggaaaaaaacacgGCTGAAAAGTAAACTCAAAGTTCTCCCACTTTCCTCACCAAGTAGCAATGAAGAGAAGTACTTTAAGGAATCCACTCCTAAATACAGaccggagagagagaggggtgaaGGAATGGCTGGGAAGCAGAATCTGGATCTTTCCCACCAACCCAAGAAGTCCATTCTGGATTCAAGGTTTCAAGACAAGACAATTCTTGAAGATTCTGTCTTCACAGAGGTGGAACCTGTTGGATCTATTGAGGTAGACAGTGTAGACAAAGTACCATCTATGCCATCAGACAGAAGACTACTGGCATCGGCAGGGTTTTTGGCGGTCGGTGTCTGATACAGTGAAAGCGTTCTGTAATAAACAGCAAAAGAGGTTGGATTCTCTAGAATTACTCAGAGGGGGGGTCCAAGCGCACCAGACAAAAGCAGAGGAAACAGAAGCAATGCCTAGCATGGTAG

Function

symbol description
sycp2l Predicted to be located in chromosome and nucleus. Human ortholog(s) of this gene implicated in spermatogenic failure 1. Orthologous to several human genes including SYCP2L (synaptonemal complex protein 2 like).

NR:

description
synaptonemal complex protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923975.2 True 3106 mRNA 0.41 33 9510609 9552504
XM_034298194.1 False 2803 mRNA 0.43 33 9510608 9562189
XM_034298195.1 False 2314 mRNA 0.42 28 9510609 9551720

Neighbor

gene id symbol gene type direction distance location
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 59265 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 95226 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 161102 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 322532 9082979 ~ 9188076 (+)
tfap2a tfap2a,LOC107664660 coding upstream 505388 8993786 ~ 9005220 (+)
LOC113541200 dnajc13 coding downstream 620602 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 783134 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 878768 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 986539 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 1248417 10810606 ~ 10828391 (+)
G329581 NA non-coding upstream 19063 9491274 ~ 9491545 (+)
LOC117595781 NA non-coding upstream 27791 9472616 ~ 9482817 (+)
G329574 NA non-coding upstream 30055 9480339 ~ 9480553 (+)
G329522 NA non-coding upstream 157875 9352150 ~ 9352733 (+)
G329523 NA non-coding upstream 174800 9335186 ~ 9335808 (+)
G329564 NA non-coding downstream 3504 9565693 ~ 9568672 (+)
G329685 NA non-coding downstream 13200 9575389 ~ 9575704 (+)
G329689 NA non-coding downstream 38419 9600608 ~ 9600840 (+)
LOC117595805 NA non-coding downstream 133470 9695659 ~ 9714739 (+)
G329697 NA non-coding downstream 157470 9719659 ~ 9723811 (+)
bmp6 bmp6 other upstream 587815 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 689297 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 844772 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 960370 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 1131712 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 59490 9621679 ~ 9687491 (+)
G329779 NA other downstream 229495 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 293993 9856182 ~ 9938468 (+)
G330038 NA other downstream 869144 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1032941 10595130 ~ 10768360 (+)

Expression


Co-expression Network