tmem14ca (tmem14c,tm14c,tmem14ca,LOC107671380)


Basic Information

Item Value
gene id tmem14ca
gene name tmem14c,tm14c,tmem14ca,LOC107671380
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9438298 ~ 9451343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923979.2
tgATTGGCTGCGCTCTGGGGGGCGGTACACAGACTAGTCCTCCATTAATGCCAGTTAATATTCTCGGGAAGGCGTCCACATGTCCGCAGGAAGCACTAGACTACTGTTTCTGGAGAATCAAAAGTGAAAGCAGTGAGCACTGAAACATGGCGGAGGCAAAGATTTGCGTGGACGAGGCGCAGTTCTGCTGTTCCATATGCCTGGATCTGCTTAAGGATCCAGTGACCATTCCGTGTGGACACAGCTACTGCATGGACTGCATCAGACACTTCTGGGATCAGGAGGCTCAGGTGAGAGCATGTTGCTGTCCACAGTGCAGACGCGGCTTCACCGTCAGGCCCGAGCTGAACCGAAACACTGTTCTTGCCGAGCTCGTGGAGAAGCTTCGACAAACCGGATTCAGTCGCTCTTCCCCGACGGCTGTCCCTGGAGCTGAAGGCGTCACATGTGACGTGTGCATAGGTGGAAAACGTCCAGCTGTCACGTCTTGCCTGGTGTGTTTAGTTTCATACTGTGATGTTCATGTTCAACCCCACTACGAGTCTCCTGCGTTTAAGAAGCACAAACTGGTTCCGGCCTGCAACTGGCTTCAGGAGAAGATCTGCTCAGTGCACGACCGACTTTATGAGTTTTACTGCCGCAaggagcaggtgtgtgtgtgttacctgtgcacGGTGGAGGAACATAAAACCCATGACACGGTAACAGCAGAGACAGCTCGAGCTGAAAAAGCGGATGAGCTTAGTAGGCTTAACAAGACAATAAATCAAAGGATACAGCAGGGGGAGAAAGTGTCCCAGGACTTGAGAAAAGCAATTAACAGAACCAAGCTTTCAGCACAGGCAGCTCGTAATGAGGTCGAAAAGATTTTTGCAGACCTGCTAGCCTCCATCCAGAGGAGACGCTTGGAGGTGATGGAGCTGCTCAGGGCACAGGAGGAGAGCGAGCTAAGAGAGGCTGAGCAACTCTTGGAGAAGACTGAGCTGGAGATCATGgatcttaaaaagaaaaacactgagctacagaAGACATTACAGATGGATGATAACATTGATTTCCTTCAGaactGCCAGTCTTTGAAGTATCCATCTGAGTCTTGCATCATTGTCAGGTCTACCCATAAAATCACATTTGAACAAGTTGTTCAGTCAGTCTCAAAGCTGCAGCAGAGCCTGGAGGACATCTGCAGTACAGAGATGAGTAACATCTCAGACACAAttAAGGAGGTCCATATCTTCCATGGACAGAAGGCAAGGAGAACAGAAACACCAGCACCACCAAAACTCCTTCCTAGCTCAGAACCAAAGACAAGAGAAGACTTTTTAAACTATGCCTGTTACCTTACTTTGGATTCTACAGCCGACCATCCAAATCTGCGTGTGTCCAACAGGGCAGTTGAGTGGGTTAACTGTATTGATCAGGCTGTATCAGACAATGGGTGGCCTCAGGTGCTGTGCAGAGAAGGTCTGACAGGTCGCTGTTACTGGGAGGCGCTGGTGATGGCGGTGGACTGGGCTGGATACGGATATGCAGCGCTCGTTGCGTCTGGAGGAGTCATGGGTTATGTCAAAGCAGgcaGTGTCCCTTCTTTGGCAGCTGGACTGCTGTTTGGAGGTCTGGCAGGTTTTGGTGCCTACCAGATGTCACACAACCCCCAAAACATTTGGGTGTCTTTAGCTACATCAGGAACCTTGGCTGCTCTCATGGGGAAAAGATTTTACAACTCTCGGAAGATAATGCCTGCGGGTATAGTGGCTGGAGCAAGtatCCTGATGTTGGCAAAGCTTGGTATTGGAGTCTTGCAGAAGCCTCAAGATTCATGACTGGTCCtgcaaaaaaatgtcttttttttttttcaaatcatattttttgtttgcatcTATATTGTACAGCTATTTAGAATAATTTGACATGATTGCGGGtctcattttctataaaatgtttaataaatgatttaaaaaaa
>XM_026923980.2
tatgATTGGCTGCGCTCTGGGGGGCGGTACACAGACTAGTCCTCCATTAATGCCAGTTAATATTCTCGGGAAGGCGTCCACATGTCCGCAGGAAGCACTAGACTACTGTTTCTGGAGAATCAAAAGTGAAAGCAGTGAGCACTGAAACATGGCGGAGGCAAAGATTTGCGTGGACGAGGCGCAGTTCTGCTGTTCCATATGCCTGGATCTGCTTAAGGATCCAGTGACCATTCCGTGTGGACACAGCTACTGCATGGACTGCATCAGACACTTCTGGGATCAGGAGGCTCAGGTGAGAGCATGTTGCTGTCCACAGTGCAGACGCGGCTTCACCGTCAGGCCCGAGCTGAACCGAAACACTGTTCTTGCCGAGCTCGTGGAGAAGCTTCGACAAACCGGATTCAGTCGCTCTTCCCCGACGGCTGTCCCTGGAGCTGAAGGCGTCACATGTGACGTGTGCATAGGTGGAAAACGTCCAGCTGTCACGTCTTGCCTGGTGTGTTTAGTTTCATACTGTGATGTTCATGTTCAACCCCACTACGAGTCTCCTGCGTTTAAGAAGCACAAACTGGTTCCGGCCTGCAACTGGCTTCAGGAGAAGATCTGCTCAGTGCACGACCGACTTTATGAGTTTTACTGCCGCAaggagcaggtgtgtgtgtgttacctgtgcacGGTGGAGGAACATAAAACCCATGACACGGTAACAGCAGAGACAGCTCGAGCTGAAAAAGCGGATGAGCTTAGTAGGCTTAACAAGACAATAAATCAAAGGATACAGCAGGGGGAGAAAGTGTCCCAGGACTTGAGAAAAGCAATTAACAGAACCAAGCTTTCAGCACAGGCAGCTCGTAATGAGGTCGAAAAGATTTTTGCAGACCTGCTAGCCTCCATCCAGAGGAGACGCTTGGAGGTGATGGAGCTGCTCAGGGCACAGGAGGAGAGCGAGCTAAGAGAGGCTGAGCAACTCTTGGAGAAGACTGAGCTGGAGATCATGgatcttaaaaagaaaaacactgagctacagaAGACATTACAGATGGATGATAACATTGATTTCCTTCAGaactGCCAGTCTTTGAAGTATCCATCTGAGTCTTGCATCATTGTCAGGTCTACCCATAAAATCACATTTGAACAAGTTGTTCAGTCAGTCTCAAAGCTGCAGCAGAGCCTGGAGGACATCTGCAGTACAGAGATGAGTAACATCTCAGACACAAttAAGGAGGTCCATATCTTCCATGGACAGAAGGCAAGGAGAAAAACACCAGCACCACCAAAACTCCTTCCTAGCTCAGAACCAAAGACAAGAGAAGACTTTTTAAACTATGCCTGTTACCTTACTTTGGATTCTACAGCCGACCATCCAAATCTGCGTGTGTCCAACAGGGCAGTTGAGTGGGTTAACTGTATTGATCAGGCTGTATCAGACAATGGGTGGCCTCAGGTGCTGTGCAGAGAAGGTCTGACAGGTCGCTGTTACTGGGAGGCGCTGGTGATGGCGGTGGACTGGGCTGGATACGGATATGCAGCGCTCGTTGCGTCTGGAGGAGTCATGGGTTATGTCAAAGCAGgcaGTGTCCCTTCTTTGGCAGCTGGACTGCTGTTTGGAGGTCTGGCAGGTTTTGGTGCCTACCAGATGTCACACAACCCCCAAAACATTTGGGTGTCTTTAGCTACATCAGGAACCTTGGCTGCTCTCATGGGGAAAAGATTTTACAACTCTCGGAAGATAATGCCTGCGGGTATAGTGGCTGGAGCAAGtatCCTGATGTTGGCAAAGCTTGGTATTGGAGTCTTGCAGAAGCCTCAAGATTCATGACTGGTCCtgcaaaaaaatgtcttttttttttttcaaatcatattttttgtttgcatcTATATTGTACAGCTATTTAGAATAATTTGACATGATTGCGGGtctcattttctataaaatgtttaataaatgatttaaaaaaa
>XM_026923983.2
CTCAAAAAACTATATTTCCCATCATTCATGCGTGAATCACGTCACACCGGAAACTGTCTGAAGGAAATTTAACTGGTTGGTCCTGCGAGGGCATTGACTTTGACTTCGAGCTAGTTCAAGTGACCCCTAAAAAAGCGCTGGTGATGGCGGTGGACTGGGCTGGATACGGATATGCAGCGCTCGTTGCGTCTGGAGGAGTCATGGGTTATGTCAAAGCAGgcaGTGTCCCTTCTTTGGCAGCTGGACTGCTGTTTGGAGGTCTGGCAGGTTTTGGTGCCTACCAGATGTCACACAACCCCCAAAACATTTGGGTGTCTTTAGCTACATCAGGAACCTTGGCTGCTCTCATGGGGAAAAGATTTTACAACTCTCGGAAGATAATGCCTGCGGGTATAGTGGCTGGAGCAAGtatCCTGATGTTGGCAAAGCTTGGTATTGGAGTCTTGCAGAAGCCTCAAGATTCATGACTGGTCCtgcaaaaaaatgtcttttttttttttcaaatcatattttttgtttgcatcTATATTGTACAGCTATTTAGAATAATTTGACATGATTGCGGGtctcattttctataaaatgtttaataaatgatttaaaaaaa
>XM_034298005.1
CTATACATTGACTGGGTTTGTTTTAATCATGCACTGAGACAGTGTATCGTTTTAAACACAGCTATAAGCCGAGCAAGGCAGCCTTTAAGGCACAGATGCTTCAGCAGATATTTAGCTTTAGCTCACTGTGTTAATTGTAAAACTGTCGTGCGCCTGTTTCATAGCCACTTTAACAGACAAGAGTGTAAAAGAGGCTGTCGGGCATGAACACTACTGCGGTTCTGGTCTTTTTCAAGCAGGCGCTGGTGATGGCGGTGGACTGGGCTGGATACGGATATGCAGCGCTCGTTGCGTCTGGAGGAGTCATGGGTTATGTCAAAGCAGgcaGTGTCCCTTCTTTGGCAGCTGGACTGCTGTTTGGAGGTCTGGCAGGTTTTGGTGCCTACCAGATGTCACACAACCCCCAAAACATTTGGGTGTCTTTAGCTACATCAGGAACCTTGGCTGCTCTCATGGGGAAAAGATTTTACAACTCTCGGAAGATAATGCCTGCGGGTATAGTGGCTGGAGCAAGtatCCTGATGTTGGCAAAGCTTGGTATTGGAGTCTTGCAGAAGCCTCAAGATTCATGACTGGTCCtgcaaaaaaatgtcttttttttttttcaaatcatattttttgtttgcatcTATATTGTACAGCTATTTAGAATAATTTGACATGATTGCGGGtctcattttctataaaatgtttaataaatgatttaaaaaaa

Function

symbol description
tmem14ca Acts upstream of or within heme biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial membrane. Is expressed in intermediate cell mass of mesoderm and ventral wall of dorsal aorta. Orthologous to several human genes including TMEM14C (transmembrane protein 14C).
tmem14c Predicted to be involved in mitochondrial transport. Predicted to act upstream of or within erythrocyte differentiation and regulation of heme biosynthetic process. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial inner membrane.

NR:

description
transmembrane protein 14C-like

GO:

id name namespace
GO:0006783 heme biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923979.2 True 1963 mRNA 0.48 12 9438300 9451343
XM_026923980.2 False 1962 mRNA 0.48 12 9438298 9451343
XM_026923983.2 False 607 mRNA 0.43 5 9447968 9451343
XM_034298005.1 False 712 mRNA 0.43 5 9448135 9451343

Neighbor

gene id symbol gene type direction distance location
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 22916 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 88792 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 250222 9082979 ~ 9188076 (+)
tfap2a tfap2a,LOC107664660 coding upstream 433078 8993786 ~ 9005220 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding upstream 586982 8839566 ~ 8851316 (+)
sycp2l sycp2l,LOC108261788 coding downstream 59265 9510608 ~ 9562189 (+)
LOC113541200 dnajc13 coding downstream 731448 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 893980 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 989614 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 1097385 10548728 ~ 10552018 (+)
G329522 NA non-coding upstream 85565 9352150 ~ 9352733 (+)
G329523 NA non-coding upstream 102490 9335186 ~ 9335808 (+)
G329361 NA non-coding upstream 464711 8973237 ~ 8973587 (+)
G329354 NA non-coding upstream 492742 8942878 ~ 8945556 (+)
G329288 NA non-coding upstream 689265 8748820 ~ 8749033 (+)
LOC117595781 NA non-coding downstream 21273 9472616 ~ 9482817 (+)
G329574 NA non-coding downstream 28996 9480339 ~ 9480553 (+)
G329581 NA non-coding downstream 39931 9491274 ~ 9491545 (+)
G329564 NA non-coding downstream 114350 9565693 ~ 9568672 (+)
G329685 NA non-coding downstream 124046 9575389 ~ 9575704 (+)
bmp6 bmp6 other upstream 515505 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 616987 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 772462 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 888060 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 1059402 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 170336 9621679 ~ 9687491 (+)
G329779 NA other downstream 340341 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 404839 9856182 ~ 9938468 (+)
G330038 NA other downstream 979990 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1143787 10595130 ~ 10768360 (+)

Expression


Co-expression Network