LOC113532582 (LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372)


Basic Information

Item Value
gene id LOC113532582
gene name LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5584416 ~ 5591733 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924003.2
AAATGACGCGTTTGAGAGACTGCATTAGTGATCAGTGATGACTGAAGGCTTTGTCTGATCCGCGTGTCATCAGCGACGCCTGGTGGCCACTGCTGAGATTGCAGGGGGCGTTTTTTTGCCACTCAGAAACAGAAGGGACACGACGCAACTTTTGAAACTTGTCATGTCGACAAACTCTGAATTTTTCCCAGgCATTTCCAAGATTTCTTATGTTCCTGATGCCGGTGCAAGAGATGTGCTGTGTTTCAAACATTATAATGCATCAGAGATTTTGCTGGGCAGGACGATGGAGGATTGGCTTCGATTCTCTGTGTGTTACTGGCACTCGTTCTGTGGAACTGGTGCTGACCCATTTGGATCTCCAACCCTGCGCAGGCCTTGGAATGAAGGAGACAACGACATGGAGATAGCAAagaaaagactgagtgctgcaTTTGAGTTCTTCACCAAACTTGGTGTGAAGTACTACACGTTTCATGACAGGGACATGGCCCCTGAGGGGCGCACTCTGGAGGAGTCCAATAGGAACCTGGATGAGATAACAGACCTGGCACTGGAGCTGCAGAAGCAGACTGGAGTGAAAGTGCTGTGGATCACCTGCAACCTGTTTGCTCATCCCAGATATATGAACGGAGCTGCAAGTAACCCAGACTGCCATGTGTTTGCCTTTGCTGGAGCTCAGGTGAAGAAAGGTCTAGAGATCGCCAAGAAACTGCAGGCTGAGAACTTTGTGTTTTGGGGAGGTCGTGAAGGCTTCCTCTCCTCACTCAACACAGACGTGGCGGCTGAACTCAAGCACATGGCCACCTTTTTCAAAATGGCCGTGGCCTATAAAGAGAAGATCGGCTTAAAATGCCAATTTCTCATTGAGCCCAAGCCGAAGGAACCTTGCAAGCACCAGTATGACTATGATGCAATGAGTGTTATTGGGTTTCTTAAGCACTTTGGACTGGACAAAGACTTTAAACTGAATATCGAGCCCAATCACACGACCCTGGCTGGACATTCTTATGAACATGACATCATCATGGCCTCCGTGTTTGGCATGCTGGGGTCTGTGGACGCCAACACAGGCTCTCCTGACTTGGGCTGGGACACGGATCAGTTCCCCATGGACATCAAAAATACGACCTTGGTGATGAAGGCTGTTATTGAGCAGGACGGCCTGCAGCCTGGAGGTTTAAATTTCGATGCCAAGGTCCGGAGGGAGTCGACTGATTTGGAGGATTTGTTCATCGCTCACATTGGTGCCATGGATGCTTTCGCTCGAGGCCTCAGAAACGCAGCCAAGATGATTGAGGAAGGAGTCCTGCAAAATATGCTGCGGGAACGCTACATGAGCTTCAGCCTTGGAATTGGACAGAAGGTGGAAGAGTGCAGTTGCTCACTGGAGGACCTTGagGAGTTCATCAAGCAAAACGGAGAGCCTAAAGTGACATCAGGGAAACAGGAACAATATGAAGCGGTCTTTAATCATTACTTGTGAGAATGCAGTAATTTTCAGTGAGATGaagtaatgaattaataaatttgAGTCTAGGAATACAGAAAAACCTTAACGAGTATATTTACTTGTACAAGCTAATATGTTaatggcaaaaa
>XM_034297883.1
CATTTCCAAGATTTCTTATGTTCCTGATGCCGGTGCAAGAGATGTGCTGTGTTTCAAACATTATAATGCATCAGAGCGAGATACAAAAAGAGAAGCTGAGGATGTCTCTTGggtgtttcacaacattaaatATTTTGCTGGGCAGGACGATGGAGGATTGGCTTCGATTCTCTGTGTGTTACTGGCACTCGTTCTGTGGAACTGGTGCTGACCCATTTGGATCTCCAACCCTGCGCAGGCCTTGGAATGAAGGAGACAACGACATGGAGATAGCAAagaaaagactgagtgctgcaTTTGAGTTCTTCACCAAACTTGGTGTGAAGTACTACACGTTTCATGACAGGGACATGGCCCCTGAGGGGCGCACTCTGGAGGAGTCCAATAGGAACCTGGATGAGATAACAGACCTGGCACTGGAGCTGCAGAAGCAGACTGGAGTGAAAGTGCTGTGGATCACCTGCAACCTGTTTGCTCATCCCAGATATATGAACGGAGCTGCAAGTAACCCAGACTGCCATGTGTTTGCCTTTGCTGGAGCTCAGGTGAAGAAAGGTCTAGAGATCGCCAAGAAACTGCAGGCTGAGAACTTTGTGTTTTGGGGAGGTCGTGAAGGCTTCCTCTCCTCACTCAACACAGACGTGGCGGCTGAACTCAAGCACATGGCCACCTTTTTCAAAATGGCCGTGGCCTATAAAGAGAAGATCGGCTTAAAATGCCAATTTCTCATTGAGCCCAAGCCGAAGGAACCTTGCAAGCACCAGTATGACTATGATGCAATGAGTGTTATTGGGTTTCTTAAGCACTTTGGACTGGACAAAGACTTTAAACTGAATATCGAGCCCAATCACACGACCCTGGCTGGACATTCTTATGAACATGACATCATCATGGCCTCCGTGTTTGGCATGCTGGGGTCTGTGGACGCCAACACAGGCTCTCCTGACTTGGGCTGGGACACGGATCAGTTCCCCATGGACATCAAAAATACGACCTTGGTGATGAAGGCTGTTATTGAGCAGGACGGCCTGCAGCCTGGAGGTTTAAATTTCGATGCCAAGGTCCGGAGGGAGTCGACTGATTTGGAGGATTTGTTCATCGCTCACATTGGTGCCATGGATGCTTTCGCTCGAGGCCTCAGAAACGCAGCCAAGATGATTGAGGAAGGAGTCCTGCAAAATATGCTGCGGGAACGCTACATGAGCTTCAGCCTTGGAATTGGACAGAAGGTGGAAGAGTGCAGTTGCTCACTGGAGGACCTTGagGAGTTCATCAAGCAAAACGGAGAGCCTAAAGTGACATCAGGGAAACAGGAACAATATGAAGCGGTCTTTAATCATTACTTGTGAGAATGCAGTAATTTTCAGTGAGATGaagtaatgaattaataaatttgAGTCTAGGAATACAGAAAAACCTTAACGAGTATATTTACTTGTACAAGCTAATATGTTaatggcaaaaa

Function

GO: NA

KEGG:

id description
K01805 xylA; xylose isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924003.2 True 1602 mRNA 0.48 14 5584416 5591733
XM_034297883.1 False 1465 mRNA 0.47 14 5584887 5591733

Neighbor

gene id symbol gene type direction distance location
rnf144b LOC108256380,LOC108440759 coding upstream 1389 5565646 ~ 5583027 (+)
ccdc127a ccdc127 coding upstream 31112 5550225 ~ 5553304 (+)
mrpl32 mrpl32 coding upstream 36583 5546551 ~ 5547833 (+)
adam22 adam22,LOC107719137,LOC107714333 coding upstream 91677 5415932 ~ 5492739 (+)
dbf4 dbf4 coding upstream 173366 5400933 ~ 5411050 (+)
sqlea sqle coding downstream 2116 5593849 ~ 5603013 (+)
si:dkey-122a22.2 LOC108256697 coding downstream 204429 5796162 ~ 5905417 (+)
dpys dpys,LOC107686378 coding downstream 474400 6066133 ~ 6084254 (+)
zgc:101716 LOC108256737 coding downstream 712848 6304581 ~ 6312558 (+)
upk1a upk1a coding downstream 727354 6319087 ~ 6326360 (+)
G327071 NA non-coding upstream 42527 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 554626 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 600736 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 659780 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 780357 4803837 ~ 4804059 (+)
G327178 NA non-coding downstream 14137 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 241260 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 250486 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1056547 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 1357826 6949559 ~ 6961376 (+)
G326997 NA other upstream 246165 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 269802 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 595100 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 654261 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 660735 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1632289 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2309782 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2780952 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2796454 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 3023340 8615073 ~ 8665836 (+)

Expression


Co-expression Network