LOC113532585 (LOC108256181)


Basic Information

Item Value
gene id LOC113532585
gene name LOC108256181
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2329248 ~ 2333724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924006.2
GCTCATCCTGTGTGGGAGTGCCAGGATGTGCGAGGTTataaataaaagctataaagCCACAGAGGCTGCAGCTCTTCACCACAGCTGGGTTTCACTGGAACACCACAGAGGGCACATCTGCACATTTCACCGACTAACTAAAGAACATTTGCCTCCCTTAACGGATTAAGACAGGACCTCTTTCCTGACATCCAGTATGAGTGGTTTGACAGAATGGATTCTGGAGAATAAGGACAAGATTGAAAAGGGAGTGGAGATCCTAGGCCAAGGCTGTGAGATCCTGGCAAACACTGTAGGCCAGTTCCATCCCATCCTGGAGGCAGTTTTTATGGTCTCAGCTGAGCTCCTCAGCAACCCAGAGGGCAAAGAGGCTAAGTATCTTGCTGAACAGTTTGAAAGTGTCAACCAGAAGTTGGAAAAGGTCCAGGGTGAGATTAAAGAAACAGAGCTGGTGCTGCAGCGATCATCGTTGAACCTCCAGAACTTTAAGTTCTACACACAGATAATCAACCagtatgaaatgtttaaatatattttcacagcCAAACCCAAGTTTAAGAAGTTGAAGATAGACGAGTTCCTCCTCTACTTTGAGGAATATGAGGAAGACAAGAACCTTGATTGCTTGTACGATGCCGTCACTAAAGAGAACACCTCTGGACATGCAATGCTGGACACGATACTGATCACTGAGCAGCGGAGCAGGAGGGCAGTGGAGGAATTCTGTGCTTGCCTGAAGAAGGTGTTTGTGGTTGGGATCATAGCATTGATGGGCTACACTGCACTAAAGGAAGGCACTGTTGGAGAGGATATGGTGAAGAAATGGCAAGAACGCATGGAGGACGTGGAGAAGCGCATGAAGGTGGCAGTGGATGAATGTGTGAACAACTTCACTGAGCAAGCCGAGATTGACATAGATCAGAAGCTCAAGGAGAAGCAGAGCAGTGTCGATCCTGAGTTTACTGAATTCCTACTGGATGCCCTTGTCAAGAAGTACGACTGGGTCTCGTGGTCAATCAGGGTGTTTAAAGATGATGACAGCAAACTTGGGAGATTTCTGTTTGGCAAGCGGCACCGTGTAAATGGTGGAAATGTCAATTATTTTGAGCATTTgtgcaataataaaataagaattgtGGTGTCTTTCACTGCAGACCCTAAACCACTCAACAAGAGCCAGATAAAGGAtcaaatagagaaagagaaaggtgaTATGAAATCTGTGGCTGAGTCTCTGTGCAAGAGTCTTCCCAACTGCCTTGTGCATGCTGTCAGTCGCTCTAACAGAGTGGAGGAAGCCAATAATTTCAACCCCGAgcacttttattatatttctcacAAAATAGCATACATTTGTATCCACTCAGAATAATATAATTTAGATCAAACTAAATATATTGATGGCAGAGTCTACACTATTTGCTCAATTTGGATTCTCCAGGCTCCTATTAATTAATGGATTCTACGTTTTTACAAAACATTATGATTGTTGTTGtctttgttgctgttgttttcatAGCACTTGATTATGGAAACATTACAGAAAAGCACTAAGGTTTGACAGGTACACATTAGGCtctaaagaaggaaaaatgggtTGAAAAGAAGTTTGATATTGTTTCAATGTTCATACATTATATTAACccctatataaataaataaacctaagGTTTAGTAAACCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924006.2 True 1683 mRNA 0.42 2 2329248 2333724

Neighbor

gene id symbol gene type direction distance location
LOC113532738 LOC108256190,LOC108256173 coding upstream 5182 2318318 ~ 2324066 (+)
LOC113532733 LOC108256181 coding upstream 12738 2313664 ~ 2316510 (+)
LOC113532735 LOC108256190,LOC108256173 coding upstream 16878 2310045 ~ 2312370 (+)
LOC113532734 NA coding upstream 32258 2295318 ~ 2296990 (+)
LOC113532739 LOC108256190,LOC108256173 coding upstream 38293 2279949 ~ 2290955 (+)
ubqln4 ubqln4,LOC107726678,LOC107756885,LOC106580647 coding downstream 5729 2339453 ~ 2349519 (+)
lamtor2 lamtor2 coding downstream 20380 2354104 ~ 2356216 (+)
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding downstream 24591 2358315 ~ 2362999 (+)
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding downstream 31029 2364753 ~ 2372440 (+)
LOC113533066 thsd7a,LOC108256167 coding downstream 93020 2426744 ~ 2537060 (+)
G325089 NA non-coding upstream 308860 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 317267 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 328244 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 396922 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 589993 1735619 ~ 1739255 (+)
G325247 NA non-coding downstream 1155 2334879 ~ 2335106 (+)
G325268 NA non-coding downstream 62949 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 66746 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 310317 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 738125 3071849 ~ 3072073 (+)
LOC113533074 LOC108256184 other upstream 113838 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 184723 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 409538 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1165634 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1319025 956584 ~ 1010223 (+)
G325435 NA other downstream 231976 2565700 ~ 2569739 (+)
hamp NA other downstream 1677656 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2057796 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2064935 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2587256 4920980 ~ 4923681 (+)

Expression


Co-expression Network