LOC113532587 (LOC108256689)


Basic Information

Item Value
gene id LOC113532587
gene name LOC108256689
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4250942 ~ 4256972 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924012.2
TGTCATTGAAGAGTATTTGAGTGCTGTGACCACATTAGAAACTAGACTATCACAGCTCAGCTGAAGCATCACAAAAGAGATTTAAAGTGCTTGAGGCGTGTGGCTACAGCAGAGTCTGGAACTTCACAGCTTGGCTGAAGCTTATCTAAAATAGTGACCATGCTGTGGACAAGAGAGCGTAGCTATTCTGTCCTGGTTGTTGACTGCATCACTCTGATCACCGGTCTTCCTGCCAACCTGCTGGCTCTCTACATTTTTATCCGAAAGGTGAAAGAGCGCCCTACGCCTCTAGACGTGCTCTTGCTCAGCCTTACCATCTCTGACCTTCTCTTCCTCTTGTTCCTCCCATTGAGCATAAACGAAGCGGCCAACATGAAATGGACCATGAACTTCTTCCTTTGTCCACTCTCAGGATTCATCTACTTCAGCACCATCCACAACAGCACCTTGCTTTTAACGGCTATCAGTGTGGAGCGCTATCTGGGAGTGGCCTTCCCTGTAAAATACAAACTCAAGCGAAATCCCAGATATGCTGTGATCGCCAGTGTCATATTCTGGGTACTTTCCATGGGCCACTGCAGTATTGTCTACATTGTTGAGTACCATAAACACAGCAATAACACCCTCAATTATCCGTCCAACAGGAATTCTTGCTACAAAGAGTTTAACAGGGAGCAGTTGAAGCTCCTATTACCCGTCCGTTTGGAGTTGTTCATTGTCATGTTCTGCATTCCTTTTCTCATCTGTTGCTTCTGCTACATCAACTTCGTCCTTATCCTCTCTCGCTTACCTAACTTCAACGCTCAGAAACGCTCTAGGGCCATTGGGCTTGCTCTGGTCACCCTCCTGGTTTTCATCATCTGCTTTATACCGTTCAATGTGTCCCATGTGGTGGGTTTTATTGAAGGGGACAGTCCATCTTGGAGAGTCTACACAGTACTACCCTGCACCTTCAATGCCTGCTTGGACCcctttgtcttttatttctccTCATCAGCAGTTCGGGGGACTTTCAATCACATGATGCAACGATTCCTCAATTGGCTACACCGTTCCTTTGGTCAGAAATTCAACTGTGTGTTGTTAGGCCGTACTACTGCTTATGAGGAGAGAACACAGAGTTCCAATGATACTTCTCGCTAGAGTCTAGTATTGCAGATAGGCACCTAATTTTATTAGTGCTCACACTGTGAATGTCTTTACAGCCATGTCGCAGAGAAGTCCTCCAGTTGTTGGTGGAACAATTGTTAATGGCCAGTACAATTTAACCCTGTTTACACAGCACAAAGGTGTAGCTAGGGGGTGATTTCAAGTTTTAAACCCCCTGAAAGAGTTTATGACAGTTTCCAATACTTATTTGTATACCTATGGTATAACACATGTAAGTGACATACCATTGTTTTTCACAGTAATTGCATGataataatgttcataaaaggTAACCATTACGATTCCTACATATTTAACCACCCAAAATGTCAGACAAATGAGTCCCTTGGTTTGTTAATCATAGGATCatgcattttttctgtttaaacgATAAGTCAGTCACCCTGGCTGAGCTGAGAGCCGATCAAATGCTGGAGGTATAatgcaggaggagaaaaagaagggaTCTGTTTTTTTAAGGTAAATAACAAATTTCCCCTTATTACTAACATGCTATTTGATAATTTCCAGTGGAATTGTCatgaaagtattttatttcctatgcctattaattttattaataggGAAAGTTTGGTTGACGGTACATTGTGGCTTaaataattagtaattattaataatttttagtaataattattagaaattattattaataattttgaaaaccACCACTGCTTCTATTGCTGTCTGGTATCCACCCAAATGCGTAGCATATTTCCTCACCCTTCCCTGAAATGAATTCCTAGCTACACCATTGAGACAGTGTATCCTCTACTGTACCCTCTACTCACCTGCTCAGAACAGTGTTCTCCTTTAAAAGCAGTATTAGTTGAGCAGTAATGCAGAAATATTTAGCTTTTTGATTATATCCAATTATTTACCATGAAATATTTAGCTTTTTGATTATATCCAATTATTTACCATGGTTTATACAGATATTATACTGATTTTTTGCTAacttttgaaaagaaaatgagtgCTTCGATATTTTTGCATTCCTAAATATTGAATTTTAAGATTACTGCTACAACCTTTAAGATTTATGAGATATAGTTCTGaatgtctctttttttatgACTTGTGTCTgagtatatgattattattcctGAGGGATCAGTGTCCATGATGAGTTTTGAATTGCCATCTGTTATTAATGCAGCCTTCTCTGAAATGTGACTCAACTGTCTAGACACTTTCACGTCTGTGAGAAAATAATGTATGTTCTCGAAAAAGTTCTCAGGACCTAGTTATCAAACGTTAATCACAACAGCTGTGTTATTTCATCAGGCAACAAGGAGAGACTTTTGTCAAACCATGAGAGatatctttctttaaaaaaaaaggataaagtgATTTGATTTTGTTACATGTGTCACACAGAGAAAGGCACAGAGGATGAGTGTGAGAAAGGACAGTGTCACAGGTAATGTCCAACACGTCAGAACCACAGAAGGCCTGTCACCACAAAGATCTAACAGGGACAGCAGGGAAAGTATTTGTGGATTTTCACAtcacattttgtgttatttacaCTTACCATTTTGTTTGTATTCTTGATCATTTTTTCTATCCACTTTCAATACGTATCATAGTTCTTCAAGAGGTTATTTGAATATGTCAAGCCatttttgattgatttatttttaattaaagaatccTTTTAAATTAATCCAAAAATCCTTATATACTTGGTGAGCCATCCAGGAGTGGACATTTATATGTGAAGTATCTGTCTCAAAAGACAGCACAGCAACAAAAATGTCTCACTGTGTGACAGCAGGACCAGACAGGGCAACATGTATAAACTGGATCACTGCTATAATCAAAGAAAGATCTAGCAGACCAGGGAAATGTTTGtggtttttcacttcattttgtgTTATTACACTTTCCAATTTATTTGTATTCCTGCTTACTTTGAGTATGTGTCATAGTTCTTTGAGAAgttatttgaataaatata

Function

GO: NA

KEGG:

id description
K04328 FFAR2, GPR43; free fatty acid receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924012.2 True 3130 mRNA 0.38 3 4250942 4256972

Neighbor

gene id symbol gene type direction distance location
LOC113532948 NA coding downstream 6082 4242354 ~ 4244860 (-)
LOC113532947 NA coding downstream 16955 4225960 ~ 4233987 (-)
LOC113532945 LOC108256150,LOC108442742 coding downstream 28770 4217568 ~ 4222172 (-)
etfb etfb,LOC107552519 coding downstream 272263 3968848 ~ 3978679 (-)
lim2.5 lim2,LOC102215845,LOC100699404,LOC103139272 coding downstream 299982 3945550 ~ 3950960 (-)
si:dkeyp-97a10.3 LOC108256724 coding upstream 4849 4261821 ~ 4273813 (-)
ago1 ago1,LOC108256363,LOC103040377,LOC103367053,LOC102230823,LOC107379324 coding upstream 93746 4350718 ~ 4374894 (-)
si:ch211-107n13.1 LOC108256083 coding upstream 193378 4450350 ~ 4466446 (-)
azin1a azin1 coding upstream 730701 4987673 ~ 5001824 (-)
spire1b LOC108256729,LOC108426375 coding upstream 762801 5019773 ~ 5045469 (-)
G326557 NA non-coding downstream 56695 4192950 ~ 4194247 (-)
G326488 NA non-coding downstream 173974 4061916 ~ 4076968 (-)
G326236 NA non-coding downstream 249117 4001618 ~ 4001825 (-)
G326235 NA non-coding downstream 249427 3999109 ~ 4001515 (-)
LOC113532993 NA non-coding downstream 369058 3873923 ~ 3881884 (-)
G326597 NA non-coding upstream 128103 4385075 ~ 4394774 (-)
LOC113532978 NA non-coding upstream 151519 4408491 ~ 4411401 (-)
G326630 NA non-coding upstream 244617 4501589 ~ 4502601 (-)
G326830 NA non-coding upstream 710326 4967298 ~ 4968547 (-)
G326875 NA non-coding upstream 847860 5104832 ~ 5105966 (-)
vsig10l vsig10l other downstream 284827 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 454574 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 846524 3319544 ~ 3404418 (-)
LOC113532533 LOC108256344 other downstream 999495 3230021 ~ 3251447 (-)
G325145 mtmr11 other downstream 2153507 2088259 ~ 2097435 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 51634 4308606 ~ 4347253 (-)
ubr5 ubr5 other upstream 675183 4932155 ~ 4977527 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 1572502 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 1999431 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 2799822 7056794 ~ 7062428 (-)

Expression


Co-expression Network