hus1 (hus1)


Basic Information

Item Value
gene id hus1
gene name hus1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8167058 ~ 8180398 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924028.2
AACACTTTTGTTTCTACAGGGAGCATGAATATGTGTGCGTCAGTGGCGCGAGCTGCTCGAATTTTTCCTATTATTACACAGTGACAGTTGAAATTAATGAGTTCATTTAAAGTCATTTAGAAGAAATAAATCTCCCAGTGTCCACAAAGTACAACTTTAGCAGCTGAAGTGACAATGAAGTTCCGAGCGAAGATAAATGACGTGGGATGTCTCAATCATTTCACACGTGTGGTGAATACCATTACAAAACTCACAAAGACTTGTGTTGTACGACTTACTGTCGACAACATTTTCTTCGTCCTTTCTGGAAAAGTCGCCAATGGAGGAGTCAGTATGTGGTGTGAGTTACTGCAGGTTAATTTTTTTGATGAATATCAACTGGAAGGTGTATCAGAAGACGCTAATGAGATATGTTTAGAAGTAAATCCAGAGAATCTATCCAGAGCTTTAAAAACCGCACAGAATGCCAAGTCCGTcaaaataaaactgacaaaGAAGCACTATCCATGCCTCACTCTAGCTGCAGAGCTGCCCTCTCTCTCGTCCATAAGTCGCGTTGTCACCCATGACATCCCCGTTGACGTCATTCCCAGAAGGCTTTGGCATGATTTTAAAGAGCCCAGTATGCCAGACTTTGATgttaGCATATATCTACCCCCACTGAAGACTATGAAGAGTGTGGTAGACAGAATGAAGAACCTCTCCAACTATTTGGTAGTGGAGGCTAACCTAAGTGGTGAAATGAATCTGAAGATTGAAACAGATCTAGTGTCTGTTACAACACACTTCAAAGATCTTGGCAATCCTCCATGGGGTGCCTCACAGTCTCAGAGTCAGAGCAGAGATGTCGAGGCCATGGCACATGCACGAGTGGATATTAGGAAACTTCAGCAATTCCTTATGGGGCAGCAGGTCAACCCAACCAAGTCCATGTGCAATATTGTTGACAAAAGGATTATTCATTTGATTCTCCTTCAGGAGGATGTGTCTCTTCAGTACTTCATCCCAGCTGTGGCGTAGTGGGAATGTTTGTATTCAAATTTACTTTCCACACTGATAGAATATTCAAAACACAGTATCTAATGAACACATCTGTTAAACGtttccctatatatatatatatatatatatttttttttaccagtttttattaaaaatgttactcTGGATTACTTACACTGCTCCACTACTCCACACTAACCAGTTTAAAATTGATGTTGTGTAACATTTTGTATAGTTGAGATGCAACTGTTTGTTTTGCAATAAAGTAAAGATTGTTAAAGGAAATGATCTCTGTAAAAGGCCATTTCATATTTTGTATCAGTGCTTCTAATCGATTTTTGGAATTtctagtttgattttttttttttattacttgccAGAAATACTACCAGGAACTGGATCTTTGTTACCAGTAATAAATTCTTCCCTTATCATTA
>XM_026924029.2
AACACTTTTGTTTCTACAGGGAGCATGAATATGTGTGCGTCAGTGGCGCGAGCTGCTCGAATTTTTCCTATTATTACACAGTGACAGTTGAAATTAATGAGTTCATTTAAAGTCATTTAGAAGAAATAAATCTCCCAGTGTCCACAAAGTACAACTTTAGCAGCTGAAGTGACAATGAAGTTCCGAGCGAAGATAAATGACGTGGGATGTCTCAATCATTTCACACGTAGGTGTGGTGAATACCATTACAAAACTCACAAAGACTTGTGTTGTACGACTTACTGTCGACAACATTTTCTTCGTCCTTTCTGGAAAAGTCGCCAATGGAGGAGTCAGTATGTGGTGTGAGTTACTGCAGGTTAATTTTTTTGATGAATATCAACTGGAAGGTGTATCAGAAGACGCTAATGAGATATGTTTAGAAGTAAATCCAGAGAATCTATCCAGAGCTTTAAAAACCGCACAGAATGCCAAGTCCGTcaaaataaaactgacaaaGAAGCACTATCCATGCCTCACTCTAGCTGCAGAGCTGCCCTCTCTCTCGTCCATAAGTCGCGTTGTCACCCATGACATCCCCGTTGACGTCATTCCCAGAAGGCTTTGGCATGATTTTAAAGAGCCCAGTATGCCAGACTTTGATgttaGCATATATCTACCCCCACTGAAGACTATGAAGAGTGTGGTAGACAGAATGAAGAACCTCTCCAACTATTTGGTAGTGGAGGCTAACCTAAGTGGTGAAATGAATCTGAAGATTGAAACAGATCTAGTGTCTGTTACAACACACTTCAAAGATCTTGGCAATCCTCCATGGGGTGCCTCACAGTCTCAGAGTCAGAGCAGAGATGTCGAGGCCATGGCACATGCACGAGTGGATATTAGGAAACTTCAGCAATTCCTTATGGGGCAGCAGGTCAACCCAACCAAGTCCATGTGCAATATTGTTGACAAAAGGATTATTCATTTGATTCTCCTTCAGGAGGATGTGTCTCTTCAGTACTTCATCCCAGCTGTGGCGTAGTGGGAATGTTTGTATTCAAATTTACTTTCCACACTGATAGAATATTCAAAACACAGTATCTAATGAACACATCTGTTAAACGtttccctatatatatatatatatatatatttttttttaccagtttttattaaaaatgttactcTGGATTACTTACACTGCTCCACTACTCCACACTAACCAGTTTAAAATTGATGTTGTGTAACATTTTGTATAGTTGAGATGCAACTGTTTGTTTTGCAATAAAGTAAAGATTGTTAAAGGAAATGATCTCTGTAAAAGGCCATTTCATATTTTGTATCAGTGCTTCTAATCGATTTTTGGAATTtctagtttgattttttttttttattacttgccAGAAATACTACCAGGAACTGGATCTTTGTTACCAGTAATAAATTCTTCCCTTATCATTA

Function

symbol description
hus1 Involved in DNA damage checkpoint signaling and cellular response to ionizing radiation. Located in nucleus.

NR:

description
PREDICTED: checkpoint protein HUS1 isoform X2

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0030896 checkpoint clamp complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K10903 HUS1; HUS1 checkpoint protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924028.2 False 1439 mRNA 0.38 8 8167058 8180398
XM_026924029.2 True 1443 mRNA 0.39 8 8167058 8180398

Neighbor

gene id symbol gene type direction distance location
pdp1 pdp1,LOC107706250,LOC107595893,LOC107593682,LOC107687812,LOC107723551 coding downstream 2794 8158372 ~ 8164264 (-)
rnf41l LOC108256558,LOC108443277 coding downstream 61057 8095583 ~ 8106001 (-)
esrp1 esrp1,LOC107593677,LOC107687807 coding downstream 101815 8047382 ~ 8065243 (-)
sgk2b LOC108256136,LOC108431077 coding downstream 207274 7955305 ~ 7959784 (-)
l3mbtl1b LOC108256683,LOC108431076 coding downstream 216328 7935463 ~ 7950730 (-)
pigm pigm coding upstream 72354 8252752 ~ 8264060 (-)
fzd6 fzd6 coding upstream 93542 8273940 ~ 8284720 (-)
LOC113532599 nipal2,LOC107731686,LOC107594621,LOC107705020 coding upstream 128010 8308408 ~ 8322160 (-)
rpgrip1 NA coding upstream 408866 8589264 ~ 8646509 (-)
cavin1b LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710 coding upstream 472034 8652432 ~ 8665855 (-)
G328908 NA non-coding downstream 33171 8133683 ~ 8133887 (-)
G328864 NA non-coding downstream 121461 8044983 ~ 8045597 (-)
G328798 NA non-coding downstream 263171 7903642 ~ 7903887 (-)
LOC113533080 NA non-coding downstream 367673 7780040 ~ 7799385 (-)
G328586 NA non-coding downstream 601866 7561326 ~ 7565192 (-)
G328942 NA non-coding upstream 32358 8212756 ~ 8215254 (-)
G329039 NA non-coding upstream 153433 8333831 ~ 8334176 (-)
G329049 NA non-coding upstream 170834 8351232 ~ 8351641 (-)
LOC117595772 NA non-coding upstream 392746 8573144 ~ 8576124 (-)
G329211 NA non-coding upstream 438829 8619227 ~ 8626449 (-)
sec61b sec61b,LOC102796100 other downstream 780711 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1104630 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1783470 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 2188679 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 3189531 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1971099 10151497 ~ 10156800 (-)
G330185 NA other upstream 2342334 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 2742728 10923126 ~ 10930775 (-)
G330379 NA other upstream 2901870 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 3763656 11944054 ~ 11996700 (-)

Expression


Co-expression Network