LOC113532597 (LOC108256466)


Basic Information

Item Value
gene id LOC113532597
gene name LOC108256466
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3940385 ~ 3945230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924031.2
AGTGCAGTTGGACCTATATGCTGAAATTAGAAGTTCTTAACATATGGATTGCTTTTAATTTCAATAAGAAGTAAGAAGACTTCTTTGGTTATCATAACACTGGAGCATATTACTGTCATTggTGTCCTGCAGTTACCAAAATGATAAACCACTGGGTCCTTCTCTCAGCCTACATTATAACCTTCTTAATCGGCCTACCAGCCAATATCCTGGCCATTTATGCCTTCATCAGGAAGCTTAGCAAAAAACCCACACCCACAGACGTCCTCCTGCTGAACCTGACTCTCTCTGATCTGCTGTTCTTGTTTTTCCTACCGATGAAGATGTATGAGGCTGCATCAGGCCTGCAGTGGCACCTTTCCCAGACCATGTGCTCTATCATGTCATTTGTCTTTTTCAGCACCATCTACACCAGCTCTCTGTTGCTGATGGCTGTTAGCATTGACCGCTACTTGGGAGTGGCCTTCCCAGTGACCTACATGAAATTTCGCAAGCTTCTCTATGCCATCATTGGCAGTATTTTCATCTGGCTGTTCAGTGGAGCACACTGCACGCTTGTGTTTTTTGTCGTCCATATGGGCAAGGAGAACAGCACTCAACCCAAGACCACCTGCTACGAGAACTTCACCGATGACCAGAAAAGCATTGTACTTCCAGTGCGCCTGGAGTTTTTTGTGGTTCTTTGTTTGGTGCCCCTGGTTGTATGTGTGTTCTGCTATCTTAACTGCATCTGGATACTTTACCACAGGCCCCGCATAACAAAGGAGAAGAAGCAGAGGGCCATTGGAATGGCATTGGGCACCTTGAGCGTCTTCTTGATTTGCTTTATGCCCTACAACATCTCTCATCTGGTGGGCTTCAACACCAACAACAGCCCACCATGGAGGTACTACACACTGCTCCTAAGCACCTTCAACACTTGCCTGGACCCCATCATCTTCTACTTCTCCTCAACCGTGTATCGCAACACCACCAAAGTGTCCCTCTGGAGAGTTTTCTCAATTAGGCGCCGTCTAGGCTTGAACACCCCTCCCAATATGAGTGTTGATGGAGATTCTAACTCTGACAAGGAATTTGACCGTCACAATAGTaacaacagaaaataaagagattCTACAAGATTGTACAATGATTGTGCATCTTAAACATTGAGcttgaattaaatatttttggcaAATTCATCAGGTGAGGCACATCCTAATAACTAAAATGTACAATGCTACCACAGACCTGTAGAGAATAAGGTGTATGATGTGAGAGTTgttgacagtagttctggctgcaaggcgtatcacaggtttatattattgtgcaGGTTCTAGTACATTATAgttcctatagtaacaacagacgcagggacttgtatgttggataatcagatttaaaaatgtacctttGTTTTTATGATGACGTTTTCtgggagatgtttatttagtattttttgaaggagtctccaggaccagagctttgaaacagtcagatgtcaaaaaaaaaaaaaaacaattctgacACAGGGACGTTTTCAGGAAAGATGTCTTTTCTATAAGACCAGAAAATTATTTCACTTTACAatgggctgcatcacacacacatgtatagcCACATACAGTAGCTACTATTTATATTGACCTCAAGACACTTCTTTTGGTGACTGAGGCTTGGTAAGCTGCGTCTACGCAGTTTGAAGATGAAGATCAAATGGGGTCCAATCAACTATTCTTTCAAAAGGTTTAAATTAGGTCAGAGGTCCAAATTTAATGTCTTGACTATGTTGTTATAAGTGCTTACCCATTTTTCTAATTATTGATGGGTTTCACCAAGGAAGACACTTCTGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924031.2 True 1838 mRNA 0.42 2 3940385 3945230

Neighbor

gene id symbol gene type direction distance location
LOC113532598 LOC108256467 coding upstream 358 3935562 ~ 3940027 (+)
LOC113532591 NA coding upstream 5209 3917415 ~ 3935176 (+)
nr1d2a nr1d2,LOC108256654,LOC105891902,LOC107743928,LOC107565234,LOC107700655 coding upstream 48482 3881971 ~ 3891903 (+)
ube2e2 ube2e2,LOC108256709,LOC100705137,LOC105021876,LOC106582102,LOC106605266,LOC103388353 coding upstream 61861 3849062 ~ 3878524 (+)
rab5ab rab5a,LOC103038585,LOC108249324 coding upstream 217616 3714016 ~ 3722769 (+)
LOC113532613 usf2 coding downstream 35198 3980428 ~ 4002436 (+)
iglon5 iglon5,zgc:110372,LOC107707642,LOC107671460,LOC107733024,LOC106582734 coding downstream 124826 4070056 ~ 4206519 (+)
LOC113532664 NA coding downstream 338058 4283288 ~ 4288230 (+)
si:dkeyp-97a10.2 LOC108256364 coding downstream 349139 4294369 ~ 4303530 (+)
dhdds dhdds,LOC106582847,LOC106605152 coding downstream 432793 4378023 ~ 4389461 (+)
G326131 NA non-coding upstream 59444 3880677 ~ 3880941 (+)
G326023 NA non-coding upstream 238232 3701334 ~ 3702153 (+)
G325815 NA non-coding upstream 618055 3319917 ~ 3322330 (+)
G325754 LOC108256342 non-coding upstream 680204 3258929 ~ 3260181 (+)
G325730 NA non-coding upstream 731423 3139312 ~ 3208962 (+)
G326178 NA non-coding downstream 152 3945382 ~ 3946133 (+)
G326193 NA non-coding downstream 22302 3967532 ~ 3973002 (+)
G326288 NA non-coding downstream 373985 4319215 ~ 4359118 (+)
G326281 NA non-coding downstream 403551 4348781 ~ 4351847 (+)
LOC117595758 NA non-coding downstream 521278 4466508 ~ 4468850 (+)
G325435 NA other upstream 1370646 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 1724975 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 1795860 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 2020675 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 2776771 1118268 ~ 1163614 (+)
hamp NA other downstream 66150 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 446290 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 453429 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 975750 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 979551 4924781 ~ 4930155 (+)

Expression


Co-expression Network