LOC113532598 (LOC108256467)


Basic Information

Item Value
gene id LOC113532598
gene name LOC108256467
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3935562 ~ 3940027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924032.2
ACTTACCAAGAAGCAGTTCAGACCAAGGAGCAAAGTTACAAATCAGGATGTGAAAGAATGAAGAGGgatagtttattaaaaaaaaatattgaaattctACTGAAGAAATGTCAATGGATATGAGTTACAATGCATTTATTTGAGGAATTTGGACTGATTTAGGAGAAACGGTGgtgacagaaaagaaaaagactcaTTTTTATCGTTGCATATTGCTGGCTTGAATACATTTGTCAGAGCTATGGTGTCCGGGGCTGTGATCCTGTCAGTCTACATCCTTACCTTTTTGATTGGCCTCCCGGCAAACACACTCGCCTTGTACACCTTCATCAAGAAGCTTCGTGACAAACCCACACCCACTGACTTCCTCCTGCTCAATCTGACCATATCGGACCTTCTTTTCCTGCTCTTCCTGCCTTTCAAGATGTACGAGGTAGCATCTGAAATGCGCTGGCTCCTCCCTAGTTACTTGTGTCCTCTCACCACGTTCATATTCTTCTCCACCATCTATACCagctcgctgctgctgatgGCTGTTAGTGTTGACCGCTACCTGTGTGTGGCATTCCCAGTCAAGTATAAGATCCATCAGAAGCCTATATATGGAGTCATCTGCAGCATCTTTGTCTGGATCACTACGTCAACCCATCTCTGCTTTGTATACATTGTGGATCACCTGACTGGGGATGATAGCCATGGCCATGACTGCTACAACAACTTTACTCAGTCCCAGCTGGACGTAGTATTGCCCATGCGCCTGGAGCTATGCCTCGTTCTCTACTTTCTCCCACTCATCGTTTGCACCTTCTGCTACACAAGATTCATCCTCATTCTCAGGCGCACTGCCAGCCTCAATGAGGGGAAGAGACGGAGGGCCGTTGGCATGGCCATGGGAACACTGCTGGTCTTTGTGGTCTGTTTCCTGCCTTACAACACCACACATATCCTGGGCTACATCATTGAGGACAATGTGACCTGGAGATCCGATGCTTTGCTTCTCACCACCGTCAACACAGTCTTCGACCCAAtcactttttatttctcctcAGCTGCCTTTCAGGGAAATCTGAAGGCTCTCCTAAGACCCAGGACTAAGACTGCTTACACTGGCGATGGGATAGAAAATGTCTGTACTACACAGAATCGAGTGAGACAAGGCAACCAGTCTGAAAATATACAAGATAATGATGCTAGTGAATTGCAATGTCCACAGGGAGTTTGATCTTCTGCAAACCTCTGAGTACCAAATTAGGGGGTCTTACAAGACCTTCACAGTTTGTAGACAGAATAGCAGAATCCACATGAATAAGTATCTTTACTTTGTTTGGTAACAAAATTTGTTTGAGGCAAGTTCCAGTGAGGCCAACTAGTTGGTGCCAAATTTGGTAATCAGTGGCATCCAAATTTAGCACATCTTAGGGGCAAGATGAGTCAATCTGGCACTCCTGAGATCATGAACCTCACAAAGTTGTAATTTATGTCACTCTGCCATTCTGACCTTATTGTCTGATGACTTATTCCATTTTATTGATCTATTTACATTGGGACAAAGCCAGAGCAAGTCTTCAGCCCTTCAACCCACAATGTTTGTTTCTAGCTGCATAAATCCTTTATTGGAGTCAATAAATCCAGTTTTTGCTATCTAAGGTTATGCAGGGGCTACGAAGTATAAGGTTATTTTGCAGGGCCAAAGGTTGAACTCTGTGGTGCAAATTTCACTCCCTCATCATGTTCCCATGTTTTATAACCCTCAACTTTCATCAACACCAAGACGAAAACACCTTTCACGGCCTCCACAATCAGATGATCTAAATGTCATATTCAGGGCTGTGTCTGTCCCTTGTGAGCTCTAAGCAACATCCTCCCTTGTGGTCAATGAAGAGATAAAATTACCTTCCTGAGGGAAACTGACGCAATAGCAGCACCTTGtcagaaataggtttaaaagGTTTTGACTGTTAGGAAATGGTGTGACCAAGTATGGGcttttttattggtttatttaaattcttcttttttttactaactTTTGTCATTAAATATGTATTGTGCAACAGCCCTGTGAGGAACATGGAATGAGAATACAACATTATGCAAAAGAGGGCTGAGTAAACAATGCAACCAAATAAAACCAAAGCAAAATGAAACATCATTTGTCCATGTAAAATATCTTAACTGATATCTTTGCTGTCCAAGAGCCTTGGTTTCAGTATTCCACATTAAAGCAATttgcagaaaataaatattgtgtgGTATCTTAtc

Function

GO: NA

KEGG:

id description
K04328 FFAR2, GPR43; free fatty acid receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924032.2 True 2262 mRNA 0.42 2 3935562 3940027

Neighbor

gene id symbol gene type direction distance location
LOC113532591 NA coding upstream 386 3917415 ~ 3935176 (+)
nr1d2a nr1d2,LOC108256654,LOC105891902,LOC107743928,LOC107565234,LOC107700655 coding upstream 43659 3881971 ~ 3891903 (+)
ube2e2 ube2e2,LOC108256709,LOC100705137,LOC105021876,LOC106582102,LOC106605266,LOC103388353 coding upstream 57038 3849062 ~ 3878524 (+)
rab5ab rab5a,LOC103038585,LOC108249324 coding upstream 212793 3714016 ~ 3722769 (+)
LOC113532711 plcl2,LOC107688208,LOC107671457,LOC107592112,LOC100334276,LOC100701990,LOC102309498,LOC101482776 coding upstream 465350 3425575 ~ 3470212 (+)
LOC113532597 LOC108256466 coding downstream 358 3940385 ~ 3945230 (+)
LOC113532613 usf2 coding downstream 40401 3980428 ~ 4002436 (+)
iglon5 iglon5,zgc:110372,LOC107707642,LOC107671460,LOC107733024,LOC106582734 coding downstream 130029 4070056 ~ 4206519 (+)
LOC113532664 NA coding downstream 343261 4283288 ~ 4288230 (+)
si:dkeyp-97a10.2 LOC108256364 coding downstream 354342 4294369 ~ 4303530 (+)
G326131 NA non-coding upstream 54621 3880677 ~ 3880941 (+)
G326023 NA non-coding upstream 233409 3701334 ~ 3702153 (+)
G325815 NA non-coding upstream 613232 3319917 ~ 3322330 (+)
G325754 LOC108256342 non-coding upstream 675381 3258929 ~ 3260181 (+)
G325730 NA non-coding upstream 726600 3139312 ~ 3208962 (+)
G326178 NA non-coding downstream 5355 3945382 ~ 3946133 (+)
G326193 NA non-coding downstream 27505 3967532 ~ 3973002 (+)
G326288 NA non-coding downstream 379188 4319215 ~ 4359118 (+)
G326281 NA non-coding downstream 408754 4348781 ~ 4351847 (+)
LOC117595758 NA non-coding downstream 526481 4466508 ~ 4468850 (+)
G325435 NA other upstream 1365823 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 1720152 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 1791037 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 2015852 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 2771948 1118268 ~ 1163614 (+)
hamp NA other downstream 71353 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 451493 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 458632 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 980953 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 984754 4924781 ~ 4930155 (+)

Expression


Co-expression Network