LOC113532599 (nipal2,LOC107731686,LOC107594621,LOC107705020)


Basic Information

Item Value
gene id LOC113532599
gene name nipal2,LOC107731686,LOC107594621,LOC107705020
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8308408 ~ 8322160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924033.2
AGACTCAGTTtgtacacacatgcatttcACTCTGTCGAAGACCTCTAGCACAGTCCCACCAGCAAAACTGTATGCATCCTGGTGCAAAGAAACAGCTTCCTTTAAgATATATGTCCTAGGGATTATCATTGCAATATGTGGCAATCTCCTTATCAGTATTTCATTGAACATCCAGAAGTACACCCACACACGCCAGTCCCAGCAAGGCTCCAAGCCATACTACACCAGTCAACTGTGGTGGTGTGGAATCCTACTCATGGGGCTTGGTGAACTTGGTAACTTTGCTGCATATGGATTTGCACCAGCTTCTCTGATTGCTCCTCTCGGCTGTGTGTCTGTCATTGCCAGTGCTATAATCTCTGTGGTTTTCCTGAAAGAGATTTTACGAGCCTCTGATGTACTGGGGGGTGTTCTTGCTCTAACTGGTACATACCTGCTGGTGACCTTTGCCCCACACTCTGCCCCCCATGTGACAGCCAACATGGTGGAGCGCTGCCTCATCAGCTTGCAGTTCCTCATCTACTTTTTTTTTGAAGCGGTTTTGTTTTGTGTCCTGCTCTACCTGTACAAGTGCAGGAACCTGAAACACATTGTTATTGTGATGCTTCTGGTGGCTCTGCTGGcCTCTGTGACTGTGATCACGGTGAAAGCTGTTTCTGGAATGATCACAGAGACAATTCGTGGGAGCCATTTACAGCTCACGTACCCCATCTTCTACATCATGTTTATCATCATGGTAGTCTCATGTGCCTACCAGATTAAATTTCTCAATGAAGCTATGAAGATTTTTGATGCCACAGAAATTGTTCCTAtaaattttgttttcttcacaACCAGTGCTGTAATAGCAGggattttattttatgaagagtTTTATGGTTTATCATTGATATACATCATCATGTTTGTGCTTGGGTGCTTGTTAGCATTTACTGGAGTGTTTCTGATTGCTAGAACACGACCTAAAATCAAAATGGACAGAGTCTTCATCTCTATGGGTCAAATCTCAGGTAAGAGCAGCACTGCTAACATGCAGCCAGACACAAAGGACAATAAATATGGAGGTCTGGCTTCCAAACTTGTGTGCAACAGTGGAATGCAGCAGGATGACTCTTAGATCACCACCTAATGGACTAGTGAGCatagtgtgtgagacagagaagcCTTGTGTGGTAACTGTCTGAATACTAAATGTAGGCTGTACGCccatgtattaaaattaataaagaagCAATGAATTAGAA
>XM_026924034.2
AGACTCAGTTtgtacacacatgcatttcACTCTGTCGAAGACCTCTAGCACAGTCCCACCAGCAAAACTGTATGCATCCTGGTGCAAAGAAACAGCTTCCTTTAAgATATATGTCCTAGGGATTATCATTGCAATATGTGGCAATCTCCTTATCAGTATTTCATTGAACATCCAGAAGTACACCCACACACGCCAGTCCCAGCAAGGCTCCAAGCCATACTACACCAGTCAACTGTGGTGGTGTGGAATCCTACTCATGGGGCTTGGTGAACTTGGTAACTTTGCTGCATATGGATTTGCACCAGCTTCTCTGATTGCTCCTCTCGGCTGTGTGTCTGTCATTGCCAGTGCTATAATCTCTGTGGTTTTCCTGAAAGAGATTTTACGAGCCTCTGATGTACTGGGGGGTGTTCTTGCTCTAACTGGTACATACCTGCTGGTGACCTTTGCCCCACACTCTGCCCCCCATGTGACAGCCAACATGGTGGAGCGCTGCCTCATCAGCTTGCAGTTCCTCATCTACTTTTTTTTTGAAGCGGTTTTGTTTTGTGTCCTGCTCTACCTGTACAAGTGCAGGAACCTGAAACACATTGTTATTGTGATGCTTCTGGTGGCTCTGCTGGcCTCTGTGACTGTGATCACGGTGAAAGCTGTTTCTGGAATGATCACAGAGACAATTCGTGGGAGCCATTTACAGCTCACGTACCCCATCTTCTACATCATGTTTATCATCATGGTAGTCTCATGTGCCTACCAGATTAAATTTCTCAATGAAGCTATGAAGATTTTTGATGCCACAGAAATTGTTCCTAtaaattttgttttcttcacaACCAGTGCTGTAATAGCAGggattttattttatgaagagtTTTATGGTTTATCATTGATATACATCATCATGTTTGTGCTTGGAACACGACCTAAAATCAAAATGGACAGAGTCTTCATCTCTATGGGTCAAATCTCAGGTAAGAGCAGCACTGCTAACATGCAGCCAGACACAAAGGACAATAAATATGGAGGTCTGGCTTCCAAACTTGTGTGCAACAGTGGAATGCAGCAGGATGACTCTTAGATCACCACCTAATGGACTAGTGAGCatagtgtgtgagacagagaagcCTTGTGTGGTAACTGTCTGAATACTAAATGTAGGCTGTACGCccatgtattaaaattaataaagaagCAATGAATTAGAA
>XM_026924035.2
TGCACAAAGACTCAGTTtgtacacacatgcatttcACTCTGTCGAAGACCTCTAGCACAGTCCCACCAGCAAAACTGTATGCATCCTGGTGCAAAGAAACAGCTTCCTTTAAgTGTGTAGAGAAAGATTCATTCTCTTCTTATGCATCTTGGGAGCTACACCTGAATATTCAACATGGAGATATATGTCCTAGGGATTATCATTGCAATATGTGGCAATCTCCTTATCAGTATTTCATTGAACATCCAGAAGTACACCCACACACGCCAGTCCCAGCAAGGCTCCAAGCCATACTACACCAGTCAACTGTGGTGGTGTGGAATCCTACTCATGGGGCTTGGTGAACTTGGTAACTTTGCTGCATATGGATTTGCACCAGCTTCTCTGATTGCTCCTCTCGGCTGTGTGTCTGTCATTGCCAGTGCTATAATCTCTGTGGTTTTCCTGAAAGAGATTTTACGAGCCTCTGATGTACTGGGGGGTGTTCTTGCTCTAACTGGTACATACCTGCTGGTGACCTTTGCCCCACACTCTGCCCCCCATGTGACAGCCAACATGGTGGAGCGCTGCCTCATCAGCTTGCAGTTCCTCATCTACTTTTTTTTTGAAGCGGTTTTGTTTTGTGTCCTGCTCTACCTGTACAAGTGCAGGAACCTGAAACACATTGTTATTGTGATGCTTCTGGTGGCTCTGCTGGcCTCTGTGACTGTGATCACGGTGAAAGCTGTTTCTGGAATGATCACAGAGACAATTCGTGGGAGCCATTTACAGCTCACGTACCCCATCTTCTACATCATGTTTATCATCATGGTAGTCTCATGTGCCTACCAGATTAAATTTCTCAATGAAGCTATGAAGATTTTTGATGCCACAGAAATTGTTCCTAtaaattttgttttcttcacaACCAGTGCTGTAATAGCAGggattttattttatgaagagtTTTATGGTTTATCATTGATATACATCATCATGTTTGTGCTTGGGTGCTTGTTAGCATTTACTGGAGTGTTTCTGATTGCTAGAACACGACCTAAAATCAAAATGGACAGAGTCTTCATCTCTATGGGTCAAATCTCAGGTAAGAGCAGCACTGCTAACATGCAGCCAGACACAAAGGACAATAAATATGGAGGTCTGGCTTCCAAACTTGTGTGCAACAGTGGAATGCAGCAGGATGACTCTTAGATCACCACCTAATGGACTAGTGAGCatagtgtgtgagacagagaagcCTTGTGTGGTAACTGTCTGAATACTAAATGTAGGCTGTACGCccatgtattaaaattaataaagaagCAATGAATTAGAA

Function

symbol description
nipal2 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane.

GO: NA

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924033.2 False 1244 mRNA 0.43 11 8308408 8322153
XM_026924034.2 False 1205 mRNA 0.43 11 8308408 8322153
XM_026924035.2 True 1318 mRNA 0.43 12 8308408 8322160

Neighbor

gene id symbol gene type direction distance location
fzd6 fzd6 coding downstream 23688 8273940 ~ 8284720 (-)
pigm pigm coding downstream 44348 8252752 ~ 8264060 (-)
hus1 hus1 coding downstream 128010 8167058 ~ 8180398 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107593682,LOC107687812,LOC107723551 coding downstream 144144 8158372 ~ 8164264 (-)
rnf41l LOC108256558,LOC108443277 coding downstream 202407 8095583 ~ 8106001 (-)
rpgrip1 NA coding upstream 267104 8589264 ~ 8646509 (-)
cavin1b LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710 coding upstream 330272 8652432 ~ 8665855 (-)
si:dkey-197c15.6 NA coding upstream 508687 8830847 ~ 8836831 (-)
txndc5 txndc5 coding upstream 622225 8944385 ~ 8955194 (-)
bloc1s5 bloc1s5 coding upstream 640612 8962772 ~ 8967175 (-)
G328942 NA non-coding downstream 93154 8212756 ~ 8215254 (-)
G328908 NA non-coding downstream 174521 8133683 ~ 8133887 (-)
G328864 NA non-coding downstream 262811 8044983 ~ 8045597 (-)
G328798 NA non-coding downstream 404521 7903642 ~ 7903887 (-)
LOC113533080 NA non-coding downstream 509023 7780040 ~ 7799385 (-)
G329039 NA non-coding upstream 11671 8333831 ~ 8334176 (-)
G329049 NA non-coding upstream 29072 8351232 ~ 8351641 (-)
LOC117595772 NA non-coding upstream 250984 8573144 ~ 8576124 (-)
G329211 NA non-coding upstream 297067 8619227 ~ 8626449 (-)
G329290 NA non-coding upstream 428682 8750842 ~ 8751044 (-)
sec61b sec61b,LOC102796100 other downstream 922061 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1245980 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1924820 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 2330029 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 3330881 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1829337 10151497 ~ 10156800 (-)
G330185 NA other upstream 2200572 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 2600966 10923126 ~ 10930775 (-)
G330379 NA other upstream 2760108 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 3621894 11944054 ~ 11996700 (-)

Expression


Co-expression Network