ica1 (ica1,LOC107592479)


Basic Information

Item Value
gene id ica1
gene name ica1,LOC107592479
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2554120 ~ 2563081 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924042.2
TGCGTCGGTGTGACGTCATCACGCACAAGCATCTGCGGCGGTTTGACAGCGTGATAACCGGAGGAGTGAAAAACAGAGGAGATGCTTTAAAAAACCAAAACGCTACAGTTTCAAACGCACAAgCTCATTTGGAGACATGGACAGTGGACACTAtGGTTATGCCCGGGAGTACTTTGATCGCTTTATCCAGAGTCAGGACTCCTCAGTTGTGAATAAATTTCAGCAGAAATACTGGAAGACCAAACAGACGCTGATTAAAGTGACGGGAAAGAAAGAAGACGAGCATGTGGTCGCCTCGGACGCAGACCTCGATGCCAAACTGGAGGTTTTCCACTCGGTGCAGAGGACATGCATGGAGCTCCTCAAAGTGATAGAACAGTACCAGAGGAGACTCTGTCTTCTGTCTCAGGAGGAGAACGAGTTGGGGCGCTTCCTGCGCTCTCAGGGCTCTCAGGACAAAAGCCGAGCGGGGAAGATCATGCAGGCGACAGGGAAAGCGCTCTGCTTCTCCTCTcagcagagGCTGGCGTTGCGTGTCCCGCTCTGCCGCCTGTACCAGGAAGTGGAGACGTTCCGCTACAGAGCCATCTCAGACACGTGGCTCACCGTGAACAGGATGGAGCAGGCGAGGACCGAGTACCGTGGAGCTCTGCTGTGGATGAAGGACGTCTCGCAGGAACTGGACCccgacacacacaaacagatggaGAAGTTCCGCAAGGTTCAGGCTCAGGTGCGTCTCACTAAGACCGGCTTTGACAAGCTGAAGAACGACGTTTGTCAGAAGGTGGATTTACTGGGAGCCAGTCGATGTAACCTGCTCTCTCACGTCCTCACTAACTACCAGacTACCCTGTTGCATTTCTGGGAGAAAACGTCTCACACCATGGCCGCCATTCACGAGAGCTTTAAAGGCTGCCACCCGTACGAGCTCTCAGCGCAGAAGGAGAATAAAGGATCTGATCTGGGAGCAAAGAAAcggacaaagaaaaaaaacaagatgaaaaCAGAGGAAGAGGGATCGAGTCCTGCCGTAGAAGACACGCTGATTTCAATAGACGATGAGGATCTGAATAAGGACACGAATCAGTCAGGCGTGTGTTCAGGAGGCGGTGAGGAGCCACCGTGTGGCgtcagagctcaggagaaggACGGACTGAGCGTGCTCACTGACATCCTCAGCTCCAGCTCAGTGGAGGACGGAGACTTCTCTCGAGAGTGGAGGGACGTGTTCGGAGAGGACGAGAGTGTGGATGGAGGGGCATCTGCGGTCACAGATGCTCAGCTTGAGGACGAAGAGGAGGAGACGGCTTCATTCTTCCTCCCATCACAACTCCTCGACCAGAACATCCACAACCTGCAGTCTGCAGTGTCGGGATGGATTATGGGTAATTCACAAAGCTCCTCAGGACCGAGTGATCAAACTGCGGGAGCCAATCAGATCACATCCAAACCGACAGCAAGAGacACCAGTGAAAGTGTGAAGGATCGCTCTGCATGGTTTAACCTGTTTGCTGATTTGGATCCTCTCACCAACCCTGACGCAGTCGGCAGAACAGACGAGGAGCACGAGCTCTTTACTGCATAAGAGCAAAGTCCTTCTAGTAAATTCTACCCACTCGGCAGCCATCTTAGTGCAGCTCATTTAAATGTCATCTACTTAAAATGAGGAGAGACGCATATACCAAAAATGGATCaactacatgattgccatttttAACACCgatttaaaatgaaagttaAATACTCACATGAAGTGGACTTCGGctcaaataacacaaaaacgCCCACATTTTGTCAGGTAGCTACATTGCTACATGTTGTTAGCTACCAAACATTGATTAAATCTGGGATTGAGTGGGAATTTACCAGTTCTTAGTTCCCTAACATTTCTTTACACTATAATAAGaatatttcatacatttcatagaccttttttttttcggaTACTGaaggaggtttaaaaaaatcactatcGTCTTGCTATAACAGCTGCGTGAATGATCTAATCATTCCTTATGCTTTCAGCTTAACATTTGTGCAGTTAAGTATGTTTTCTGAAGCACTTGAAGCACTCTAAGGACACGGTTATTTTGATGATTGATGATTCTAATATAAAATCTctatcattaaatatatttatcattatttattaagaTGCATTCACAGAGTACATAAGTAGTGTTCATAACACATATCTCGCAGTATAACACATCATAACAGTGCCACAGAATCTtccagtgtgtgttcatgcaaaatgttttgttttagatGGATTgctttttctattattattcctctcatatactgtaaataaatgtaacttcAT
>XM_026924043.2
TGCGTCGGTGTGACGTCATCACGCACAAGCATCTGCGGCGGTTTGACAGCGTGATAACCGGAGGAGTGAAAAACAGAGGAGATGCTTTAAAAAACCAAAACGCTACAGTTTCAAACGCACAAgCTCATTTGGAGACATGGACAGTGGACACTAtGGTTATGCCCGGGAGTACTTTGATCGCTTTATCCAGAGTCAGGACTCCTCAGTTGTGAATAAATTTCAGCAGAAATACTGGAAGACCAAACAGACGCTGATTAAAGTGACGGGAAAGAAAGAAGACGAGCATGTGGTCGCCTCGGACGCAGACCTCGATGCCAAACTGGAGGTTTTCCACTCGGTGCAGAGGACATGCATGGAGCTCCTCAAAGTGATAGAACAGTACCAGAGGAGACTCTGTCTTCTGTCTCAGGAGGAGAACGAGTTGGGGCGCTTCCTGCGCTCTCAGGGCTCTCAGGACAAAAGCCGAGCGGGGAAGATCATGCAGGCGACAGGGAAAGCGCTCTGCTTCTCCTCTcagcagagGCTGGCGTTGCGTGTCCCGCTCTGCCGCCTGTACCAGGAAGTGGAGACGTTCCGCTACAGAGCCATCTCAGACACGTGGCTCACCGTGAACAGGATGGAGCAGGCGAGGACCGAGTACCGTGGAGCTCTGCTGTGGATGAAGGACGTCTCGCAGGAACTGGACCccgacacacacaaacagatggaGAAGTTCCGCAAGGTTCAGGCTCAGGTGCGTCTCACTAAGACCGGCTTTGACAAGCTGAAGAACGACGTTTGTCAGAAGGTGGATTTACTGGGAGCCAGTCGATGTAACCTGCTCTCTCACGTCCTCACTAACTACCAGacTACCCTGTTGCATTTCTGGGAGAAAACGTCTCACACCATGGCCGCCATTCACGAGAGCTTTAAAGGCTGCCACCCGTACGAGCTCTCAGCGCAGAAGGAGAATAAAGGATCTGATCTGGGAGCAAAGAAAcggacaaagaaaaaaaacaagatgaaaaCAGAGGAAGAGGGATCGAGTCCTGCCGTAGAAGACACGCTGATTTCAATAGACGATGAGGATCTGAATAAGGACACGAATCAGTCAGGAGGCGGTGAGGAGCCACCGTGTGGCgtcagagctcaggagaaggACGGACTGAGCGTGCTCACTGACATCCTCAGCTCCAGCTCAGTGGAGGACGGAGACTTCTCTCGAGAGTGGAGGGACGTGTTCGGAGAGGACGAGAGTGTGGATGGAGGGGCATCTGCGGTCACAGATGCTCAGCTTGAGGACGAAGAGGAGGAGACGGCTTCATTCTTCCTCCCATCACAACTCCTCGACCAGAACATCCACAACCTGCAGTCTGCAGTGTCGGGATGGATTATGGGTAATTCACAAAGCTCCTCAGGACCGAGTGATCAAACTGCGGGAGCCAATCAGATCACATCCAAACCGACAGCAAGAGacACCAGTGAAAGTGTGAAGGATCGCTCTGCATGGTTTAACCTGTTTGCTGATTTGGATCCTCTCACCAACCCTGACGCAGTCGGCAGAACAGACGAGGAGCACGAGCTCTTTACTGCATAAGAGCAAAGTCCTTCTAGTAAATTCTACCCACTCGGCAGCCATCTTAGTGCAGCTCATTTAAATGTCATCTACTTAAAATGAGGAGAGACGCATATACCAAAAATGGATCaactacatgattgccatttttAACACCgatttaaaatgaaagttaAATACTCACATGAAGTGGACTTCGGctcaaataacacaaaaacgCCCACATTTTGTCAGGTAGCTACATTGCTACATGTTGTTAGCTACCAAACATTGATTAAATCTGGGATTGAGTGGGAATTTACCAGTTCTTAGTTCCCTAACATTTCTTTACACTATAATAAGaatatttcatacatttcatagaccttttttttttcggaTACTGaaggaggtttaaaaaaatcactatcGTCTTGCTATAACAGCTGCGTGAATGATCTAATCATTCCTTATGCTTTCAGCTTAACATTTGTGCAGTTAAGTATGTTTTCTGAAGCACTTGAAGCACTCTAAGGACACGGTTATTTTGATGATTGATGATTCTAATATAAAATCTctatcattaaatatatttatcattatttattaagaTGCATTCACAGAGTACATAAGTAGTGTTCATAACACATATCTCGCAGTATAACACATCATAACAGTGCCACAGAATCTtccagtgtgtgttcatgcaaaatgttttgttttagatGGATTgctttttctattattattcctctcatatactgtaaataaatgtaacttcAT
>XM_034297929.1
AGCATCTGCGGCGGTTTGACAGCGTGATAACCGGAGGAGTGAAAAACAGAGGAGATGCTTTAAAAAACCAAAACGCTACAGTTTCAAACGCACAAgCTCATTTGGAGACATGGACAGTGGACACTACAGAAATACTGGAAGACCAAACAGACGCTGATTAAAGTGACGGGAAAGAAAGAAGACGAGCATGTGGTCGCCTCGGACGCAGACCTCGATGCCAAACTGGAGGTTTTCCACTCGGTGCAGAGGACATGCATGGAGCTCCTCAAAGTGATAGAACAGTACCAGAGGAGACTCTGTCTTCTGTCTCAGGAGGAGAACGAGTTGGGGCGCTTCCTGCGCTCTCAGGGCTCTCAGGACAAAAGCCGAGCGGGGAAGATCATGCAGGCGACAGGGAAAGCGCTCTGCTTCTCCTCTcagcagagGCTGGCGTTGCGTGTCCCGCTCTGCCGCCTGTACCAGGAAGTGGAGACGTTCCGCTACAGAGCCATCTCAGACACGTGGCTCACCGTGAACAGGATGGAGCAGGCGAGGACCGAGTACCGTGGAGCTCTGCTGTGGATGAAGGACGTCTCGCAGGAACTGGACCccgacacacacaaacagatggaGAAGTTCCGCAAGGTTCAGGCTCAGGTGCGTCTCACTAAGACCGGCTTTGACAAGCTGAAGAACGACGTTTGTCAGAAGGTGGATTTACTGGGAGCCAGTCGATGTAACCTGCTCTCTCACGTCCTCACTAACTACCAGacTACCCTGTTGCATTTCTGGGAGAAAACGTCTCACACCATGGCCGCCATTCACGAGAGCTTTAAAGGCTGCCACCCGTACGAGCTCTCAGCGCAGAAGGAGAATAAAGGATCTGATCTGGGAGCAAAGAAAcggacaaagaaaaaaaacaagatgaaaaCAGAGGAAGAGGGATCGAGTCCTGCCGTAGAAGACACGCTGATTTCAATAGACGATGAGGATCTGAATAAGGACACGAATCAGTCAGGCGTGTGTTCAGGAGGCGGTGAGGAGCCACCGTGTGGCgtcagagctcaggagaaggACGGACTGAGCGTGCTCACTGACATCCTCAGCTCCAGCTCAGTGGAGGACGGAGACTTCTCTCGAGAGTGGAGGGACGTGTTCGGAGAGGACGAGAGTGTGGATGGAGGGGCATCTGCGGTCACAGATGCTCAGCTTGAGGACGAAGAGGAGGAGACGGCTTCATTCTTCCTCCCATCACAACTCCTCGACCAGAACATCCACAACCTGCAGTCTGCAGTGTCGGGATGGATTATGGGTAATTCACAAAGCTCCTCAGGACCGAGTGATCAAACTGCGGGAGCCAATCAGATCACATCCAAACCGACAGCAAGAGacACCAGTGAAAGTGTGAAGGATCGCTCTGCATGGTTTAACCTGTTTGCTGATTTGGATCCTCTCACCAACCCTGACGCAGTCGGCAGAACAGACGAGGAGCACGAGCTCTTTACTGCATAAGAGCAAAGTCCTTCTAGTAAATTCTACCCACTCGGCAGCCATCTTAGTGCAGCTCATTTAAATGTCATCTACTTAAAATGAGGAGAGACGCATATACCAAAAATGGATCaactacatgattgccatttttAACACCgatttaaaatgaaagttaAATACTCACATGAAGTGGACTTCGGctcaaataacacaaaaacgCCCACATTTTGTCAGGTAGCTACATTGCTACATGTTGTTAGCTACCAAACATTGATTAAATCTGGGATTGAGTGGGAATTTACCAGTTCTTAGTTCCCTAACATTTCTTTACACTATAATAAGaatatttcatacatttcatagaccttttttttttcggaTACTGaaggaggtttaaaaaaatcactatcGTCTTGCTATAACAGCTGCGTGAATGATCTAATCATTCCTTATGCTTTCAGCTTAACATTTGTGCAGTTAAGTATGTTTTCTGAAGCACTTGAAGCACTCTAAGGACACGGTTATTTTGATGATTGATGATTCTAATATAAAATCTctatcattaaatatatttatcattatttattaagaTGCATTCACAGAGTACATAAGTAGTGTTCATAACACATATCTCGCAGTATAACACATCATAACAGTGCCACAGAATCTtccagtgtgtgttcatgcaaaatgttttgttttagatGGATTgctttttctattattattcctctcatatactgtaaataaatgtaacttcAT

Function

symbol description
ica1 Predicted to enable protein domain specific binding activity. Predicted to act upstream of or within regulation of insulin secretion. Predicted to be located in Golgi membrane and secretory granule membrane. Is expressed in central nervous system; neurons; rhombomere; and ventricular zone. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human ICA1 (islet cell autoantigen 1).

NR:

description
islet cell autoantigen 1-like

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K19863 ICA1; islet cell auto antigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924042.2 True 2329 mRNA 0.47 13 2554120 2563081
XM_026924043.2 False 2317 mRNA 0.47 13 2554120 2563081
XM_034297929.1 False 2232 mRNA 0.47 13 2554147 2563081

Neighbor

gene id symbol gene type direction distance location
LOC113532859 LOC108256203 coding upstream 4223 2542942 ~ 2549897 (+)
LOC113533066 thsd7a,LOC108256167 coding upstream 17060 2426744 ~ 2537060 (+)
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding upstream 181680 2364753 ~ 2372440 (+)
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding upstream 191121 2358315 ~ 2362999 (+)
lamtor2 lamtor2 coding upstream 197904 2354104 ~ 2356216 (+)
col28a1b LOC108256731 coding downstream 20138 2583219 ~ 2607036 (+)
slc25a32b slc25a32,LOC107688281,LOC107756894,LOC107726671 coding downstream 83700 2646781 ~ 2656914 (+)
pbx2 LOC108256343,LOC108439298,LOC103040777,LOC107711540 coding downstream 677361 3240442 ~ 3251360 (+)
tap1 tap1 coding downstream 702202 3265283 ~ 3278447 (+)
brd2b LOC108256339,LOC103041900,LOC107592490 coding downstream 716916 3279997 ~ 3295032 (+)
G325271 NA non-coding upstream 153436 2400470 ~ 2400684 (+)
G325268 NA non-coding upstream 157233 2396673 ~ 2396887 (+)
G325247 NA non-coding upstream 219014 2334879 ~ 2335106 (+)
G325089 NA non-coding upstream 533732 2020184 ~ 2020388 (+)
LOC117595767 NA non-coding upstream 553116 2000137 ~ 2001004 (+)
G325462 NA non-coding downstream 80960 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 508768 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 576231 3139312 ~ 3208962 (+)
G325754 LOC108256342 non-coding downstream 695848 3258929 ~ 3260181 (+)
G325815 NA non-coding downstream 756836 3319917 ~ 3322330 (+)
LOC113533074 LOC108256184 other upstream 338710 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 409595 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 634410 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1390506 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1543897 956584 ~ 1010223 (+)
G325435 NA other downstream 2619 2565700 ~ 2569739 (+)
hamp NA other downstream 1448299 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 1828439 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 1835578 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2357899 4920980 ~ 4923681 (+)

Expression


Co-expression Network