LOC113532629 (LOC108256652,LOC108256651)


Basic Information

Item Value
gene id LOC113532629
gene name LOC108256652,LOC108256651
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5241135 ~ 5248144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924083.2
TCTAGCTATGGCGTCTAAACGTCTCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCAGCTGCGTTCACCGGTACTGGGACATCAAACGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCCGCGATAAACCCTACGATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATAGAGAGAAGCTGAAACTCTTCTGTGTGAATGACGGAGAGGTCGCGTGCTTGCTCTGTCGAGATTCTAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTTCTGAACTAAAGGGTGTTCTTATGAGTGCACTGAATaccttgaaaatgaaaatgaagagcCTCCAAGATGCCCACTTTCATTGTCATCAAAATATAGATCACATAAAGCAACAGGCAGAGTACGTAAAGAATCAGATAAAGGAGGAATTTAAGAAACTTCGGCAGTTTCTGCAAAAGGAGAATAGAGCCATGATGAAGCAGCTGAAGAAGGAGGAGCAGGAGAAAACAAAGAGTCTGGAAAGCAAAATAGAACAAATGAATCAAGAGATACAGTCACTCTCAGACACTATTAAAGACCTAAGAAAGGAATTTGAATCTGAAGACGTCAAATTCCTGAAGAACTTTGAGAGGACTTTGGCAAAATCCGAGTACAAAGATTCTCATCCAAATGTGGCTTCAGGCGAAGTTATTGATGTGGCAATGTACGTGGGAAACCTGCAGTTCAGACTCTGGAACAAAATGCAGAGCATCATTAAATACaCTCCTGTTATCTTGGACCCAAACACAGCTCACTCGCAGCTCATTCTGTCTTCGGATCTGACCAGCGTAAGAGACAGTGATGATGACGTTGAGGACAAGGCTGACAAGCCCAGACTACCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTCGGTGTGACCACTGAGACTGTTCAGAGAAAAGAATCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGGTGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCTTGCCAGCAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCCAGCCTTTTGTGATGCTGGAAGACATCCCTTAATGCTCTTGTTTCTAAGTGATAAGTGGCAGTGATAAGTGGCGGTGGTTCACATTACTGACTGTAGTCCATTTTTAAAGttgtaatgtatttattctgTTGTAGCAACTTGAAGAACAAGTAAACTAGATCAGGGTACAGTCTGACAACTTGTTTGATGCTAAAGAAAGACGTATGGTGATGTAGATTATGTGGAGAACATGTCAGtacagttttgttttgctttctgtaCCTTTCATGGCTAAAGGTGAAAAAGATGGAACTATATAACAGAATATAATGTGTCAAGTGTTTGTTCACACTTAGACATAAGGCTGttacactttaaaatgtttatcttCTACATCTTGTGCTCTAATAGTTCCACACAGTTTGTGTTATTAGTCAGAACCTAGCTCATGTGACATCTTTCGGTTTTCACCCTGGTTTTCCCCTagtcatttgtcatttttcttagTGTCATACGTAAAATAttatgccaaattctgattccaAATTCTTCTTCCATCTGATGGGAGAAGGGACATTAAATGAAGTGTTAAAACCTCTTAGCACTTTCTGGCAAATCATAGTGTGGGAGACTTTCTAATGACAAGCTTATAAGGCATGACTGATTTGTTGTGATGGCCATGACCGTTATCGAAACATGGGTTCAAGGACACACAGTATTAGAGACCAAACACAGGTGAATACAGTGAAGCTTTGTTGaaacataaataacacaatGGGTAATGCACTAATCCACCTCCTAAATAAAAGCCTAGATAAGTTTTATTGATGGAAATTGGTATTGATAGGGATTCTATTCTGAACTTaagtttctttttctgtcttttttttttagccataaTTTCTGGAAAATCGCTCTGGAGTATAAAACCTTGTTTGAACTGGATTCGTTTTACCTGTAATCTTAGTGATTACTAAAGAGATCTAAAATTAGTATACTGCTAAAATGTAGCATAACCTGTACATATACATCTTGGCTATGATGTTTACATCTGGACTGTCTGTTTGAGGACTGCACTTATGCACTTATTCATTCTAGCATCTAATTCAGTTTAGtttgattttgttattttgttacttttaaTGTGTATTTGCTATATTCTTTTAAACCTTTACTTTCCATATACTGTAAGCcatgttgtgttattttattcatgtttctCATTATTTCTTCCTGCAAAACACTGTGAACTTGTGTAGGAACATGTACAGCCTAGTTTAGTAGTAGAAGCCTTGTTTAAGAGAtgcacatatttaaaatatgaaggCACACCTTGTTAGCACTGTGAAAGTGGATTTCctcttgatttttttatgtcatccttttaaatattattcataatatgtaaagaaaacgtgcttattattattattattattattattattattattattattattataactattattatgTTATGTCACTGTAAAAGTCTCCTGGAGGTGCTCACACCAGCCAATttggaaattaatcaaaacctgaGAATACAAAACCAAAGAATATAAAGGTGCTTTAAACATTCTGAGGTATGGTCCAAAATCCTGCTGTGTGTAGTTGGtgcatgtattttttg
>XM_034297954.1
TCTAGCTATGGCGTCTAAACGTCTCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCAGCTGCGTTCACCGGTACTGGGACATCAAACGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCCGCGATAAACCCTACGATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATAGAGAGAAGCTGAAACTCTTCTGTGTGAATGACGGAGAGGTCGCGTGCTTGCTCTGTCGAGATTCTAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTTCTGAACTAAAGCAACAGGCAGAGTACGTAAAGAATCAGATAAAGGAGGAATTTAAGAAACTTCGGCAGTTTCTGCAAAAGGAGAATAGAGCCATGATGAAGCAGCTGAAGAAGGAGGAGCAGGAGAAAACAAAGAGTCTGGAAAGCAAAATAGAACAAATGAATCAAGAGATACAGTCACTCTCAGACACTATTAAAGACCTAAGAAAGGAATTTGAATCTGAAGACGTCAAATTCCTGAAGAACTTTGAGAGGACTTTGGCAAAATCCGAGTACAAAGATTCTCATCCAAATGTGGCTTCAGGCGAAGTTATTGATGTGGCAATGTACGTGGGAAACCTGCAGTTCAGACTCTGGAACAAAATGCAGAGCATCATTAAATACaCTCCTGTTATCTTGGACCCAAACACAGCTCACTCGCAGCTCATTCTGTCTTCGGATCTGACCAGCGTAAGAGACAGTGATGATGACGTTGAGGACAAGGCTGACAAGCCCAGACTACCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTCGGTGTGACCACTGAGACTGTTCAGAGAAAAGAATCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGGTGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCTTGCCAGCAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCCAGCCTTTTGTGATGCTGGAAGACATCCCTTAATGCTCTTGTTTCTAAGTGATAAGTGGCAGTGATAAGTGGCGGTGGTTCACATTACTGACTGTAGTCCATTTTTAAAGttgtaatgtatttattctgTTGTAGCAACTTGAAGAACAAGTAAACTAGATCAGGGTACAGTCTGACAACTTGTTTGATGCTAAAGAAAGACGTATGGTGATGTAGATTATGTGGAGAACATGTCAGtacagttttgttttgctttctgtaCCTTTCATGGCTAAAGGTGAAAAAGATGGAACTATATAACAGAATATAATGTGTCAAGTGTTTGTTCACACTTAGACATAAGGCTGttacactttaaaatgtttatcttCTACATCTTGTGCTCTAATAGTTCCACACAGTTTGTGTTATTAGTCAGAACCTAGCTCATGTGACATCTTTCGGTTTTCACCCTGGTTTTCCCCTagtcatttgtcatttttcttagTGTCATACGTAAAATAttatgccaaattctgattccaAATTCTTCTTCCATCTGATGGGAGAAGGGACATTAAATGAAGTGTTAAAACCTCTTAGCACTTTCTGGCAAATCATAGTGTGGGAGACTTTCTAATGACAAGCTTATAAGGCATGACTGATTTGTTGTGATGGCCATGACCGTTATCGAAACATGGGTTCAAGGACACACAGTATTAGAGACCAAACACAGGTGAATACAGTGAAGCTTTGTTGaaacataaataacacaatGGGTAATGCACTAATCCACCTCCTAAATAAAAGCCTAGATAAGTTTTATTGATGGAAATTGGTATTGATAGGGATTCTATTCTGAACTTaagtttctttttctgtcttttttttttagccataaTTTCTGGAAAATCGCTCTGGAGTATAAAACCTTGTTTGAACTGGATTCGTTTTACCTGTAATCTTAGTGATTACTAAAGAGATCTAAAATTAGTATACTGCTAAAATGTAGCATAACCTGTACATATACATCTTGGCTATGATGTTTACATCTGGACTGTCTGTTTGAGGACTGCACTTATGCACTTATTCATTCTAGCATCTAATTCAGTTTAGtttgattttgttattttgttacttttaaTGTGTATTTGCTATATTCTTTTAAACCTTTACTTTCCATATACTGTAAGCcatgttgtgttattttattcatgtttctCATTATTTCTTCCTGCAAAACACTGTGAACTTGTGTAGGAACATGTACAGCCTAGTTTAGTAGTAGAAGCCTTGTTTAAGAGAtgcacatatttaaaatatgaaggCACACCTTGTTAGCACTGTGAAAGTGGATTTCctcttgatttttttatgtcatccttttaaatattattcataatatgtaaagaaaacgtgcttattattattattattattattattattattattattattattataactattattatgTTATGTCACTGTAAAAGTCTCCTGGAGGTGCTCACACCAGCCAATttggaaattaatcaaaacctgaGAATACAAAACCAAAGAATATAAAGGTGCTTTAAACATTCTGAGGTATGGTCCAAAATCCTGCTGTGTGTAGTTGGtgcatgtattttttg
>XM_034297955.1
TCTAGCTATGGCGTCTAAACGTCTCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCAGCTGCGTTCACCGGTACTGGGACATCAAACGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCCGCGATAAACCCTACGATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATAGAGAGAAGCTGAAACTCTTCTGTGTGAATGACGGAGAGGTCGCGTGCTTGCTCTGTCGAGATTCTAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTTCTGAACTAAAGAACTTTGAGAGGACTTTGGCAAAATCCGAGTACAAAGATTCTCATCCAAATGTGGCTTCAGGCGAAGTTATTGATGTGGCAATGTACGTGGGAAACCTGCAGTTCAGACTCTGGAACAAAATGCAGAGCATCATTAAATACaCTCCTGTTATCTTGGACCCAAACACAGCTCACTCGCAGCTCATTCTGTCTTCGGATCTGACCAGCGTAAGAGACAGTGATGATGACGTTGAGGACAAGGCTGACAAGCCCAGACTACCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTCGGTGTGACCACTGAGACTGTTCAGAGAAAAGAATCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGGTGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCTTGCCAGCAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCCAGCCTTTTGTGATGCTGGAAGACATCCCTTAATGCTCTTGTTTCTAAGTGATAAGTGGCAGTGATAAGTGGCGGTGGTTCACATTACTGACTGTAGTCCATTTTTAAAGttgtaatgtatttattctgTTGTAGCAACTTGAAGAACAAGTAAACTAGATCAGGGTACAGTCTGACAACTTGTTTGATGCTAAAGAAAGACGTATGGTGATGTAGATTATGTGGAGAACATGTCAGtacagttttgttttgctttctgtaCCTTTCATGGCTAAAGGTGAAAAAGATGGAACTATATAACAGAATATAATGTGTCAAGTGTTTGTTCACACTTAGACATAAGGCTGttacactttaaaatgtttatcttCTACATCTTGTGCTCTAATAGTTCCACACAGTTTGTGTTATTAGTCAGAACCTAGCTCATGTGACATCTTTCGGTTTTCACCCTGGTTTTCCCCTagtcatttgtcatttttcttagTGTCATACGTAAAATAttatgccaaattctgattccaAATTCTTCTTCCATCTGATGGGAGAAGGGACATTAAATGAAGTGTTAAAACCTCTTAGCACTTTCTGGCAAATCATAGTGTGGGAGACTTTCTAATGACAAGCTTATAAGGCATGACTGATTTGTTGTGATGGCCATGACCGTTATCGAAACATGGGTTCAAGGACACACAGTATTAGAGACCAAACACAGGTGAATACAGTGAAGCTTTGTTGaaacataaataacacaatGGGTAATGCACTAATCCACCTCCTAAATAAAAGCCTAGATAAGTTTTATTGATGGAAATTGGTATTGATAGGGATTCTATTCTGAACTTaagtttctttttctgtcttttttttttagccataaTTTCTGGAAAATCGCTCTGGAGTATAAAACCTTGTTTGAACTGGATTCGTTTTACCTGTAATCTTAGTGATTACTAAAGAGATCTAAAATTAGTATACTGCTAAAATGTAGCATAACCTGTACATATACATCTTGGCTATGATGTTTACATCTGGACTGTCTGTTTGAGGACTGCACTTATGCACTTATTCATTCTAGCATCTAATTCAGTTTAGtttgattttgttattttgttacttttaaTGTGTATTTGCTATATTCTTTTAAACCTTTACTTTCCATATACTGTAAGCcatgttgtgttattttattcatgtttctCATTATTTCTTCCTGCAAAACACTGTGAACTTGTGTAGGAACATGTACAGCCTAGTTTAGTAGTAGAAGCCTTGTTTAAGAGAtgcacatatttaaaatatgaaggCACACCTTGTTAGCACTGTGAAAGTGGATTTCctcttgatttttttatgtcatccttttaaatattattcataatatgtaaagaaaacgtgcttattattattattattattattattattattattattattattataactattattatgTTATGTCACTGTAAAAGTCTCCTGGAGGTGCTCACACCAGCCAATttggaaattaatcaaaacctgaGAATACAAAACCAAAGAATATAAAGGTGCTTTAAACATTCTGAGGTATGGTCCAAAATCCTGCTGTGTGTAGTTGGtgcatgtattttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924083.2 True 3015 mRNA 0.40 6 5241135 5248144
XM_034297954.1 False 2919 mRNA 0.40 5 5241135 5248144
XM_034297955.1 False 2688 mRNA 0.40 4 5241135 5248144

Neighbor

gene id symbol gene type direction distance location
LOC113532857 NA coding upstream 963 5236219 ~ 5240172 (+)
LOC113532508 LOC108256086 coding upstream 7086 5228577 ~ 5234049 (+)
ncam3 NA coding upstream 37731 5190018 ~ 5203404 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding upstream 90908 5144970 ~ 5150227 (+)
nkd2b nkd2 coding upstream 100328 5111073 ~ 5140807 (+)
LOC113532776 LOC108256651 coding downstream 766 5248910 ~ 5254552 (+)
LOC113532775 LOC108256159 coding downstream 6542 5254686 ~ 5258559 (+)
fam171a1 fam171a1 coding downstream 12294 5260438 ~ 5294743 (+)
nmt2 nmt2,LOC107738873,LOC107681575 coding downstream 50158 5298302 ~ 5307139 (+)
crot crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792 coding downstream 69054 5317198 ~ 5331214 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 211345 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 257455 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 316499 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 437076 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 437624 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 293214 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 357726 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 584849 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 594075 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1400136 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 251819 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 310980 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 317454 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 806884 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 846351 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 63065 5311209 ~ 5314614 (+)
G326997 NA other downstream 84124 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1975878 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2653371 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3124541 8372685 ~ 8378896 (+)

Expression


Co-expression Network