LOC113532640 (LOC108256717)


Basic Information

Item Value
gene id LOC113532640
gene name LOC108256717
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6654775 ~ 6759822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924097.2
agaggagacaGAAGCagaaagggaggaggaggaggaggaagaggaggaggaaaaagaagGGTTCGAGCTCGCATTTGAAATAAAAGTCGCTGCATTCAGACTGCGCGCGCTCCGTTCCTGCATCCCCGAACTAAGCTTGGTCTCGTGGAGGATCTAGTCCTCTAACTGCCCAGCACTGACTAACACTGTTGCTCTGAAGCTCATGGGCGAGAGAGCGGATGGCGTGCTACTACCTGGTGATTAGCTCCACGCACCTCAGCAACGGACACCTCCGGAGTATCAAGGGAGTTTTCCGCGGTCCGCTGTGCGCGAGCGGCGGCGCAGAATCTCCGcaggaCTATGCTGAAAAGGAGAAAGCCATAACCAAAGCTCTGGAGAACCTGAAGGCCAACTTCTATTGTGAGCTTTGCGACAAACAGTACCACAAGCATCAAGAGTTTGACAACCACATCAACTCATATGACCATGCACACAAACAGAGACTGAAGGAGCTTAAGCAAAGAGAATTTGCACGCAATGTCTCATCTAAGAGCTGGAAGGATGAAAGGAAGCAAGAGAAAGCACTGAAACGCCTCCATCAAATTGCCCTGCTCAAGCAGCAAAGGGATGGtgacaaggaaaagaaGACAAAGTTAACAGCTGCAGCCCGAGACCAGCAGCAAGAGAAAATAAGGCTCAATGGCAGTGACAAACCAGGATCCAACAACACCCTATACCAAGATCAGAATCACAGCACTCCCTCCCCAAAGGAAGGACCAAAATCCCCAACCACCAAAATCCCTCCATCTGCGCCAGTGCTTACAAATCAGTGCTCTCTTCGGGTTAAGTGTTCCTCACTGCTAGCTCAGACCCCAAAAGGTCACCGGCATGCTAAGGCAGGGATCTCATTCTGTTTCTCCAAACGGGCTCACCTGAAGCTGGACTCCTGTGCATCAGTGTTCACTGATGGCTTGGATGAAACTAGTGACCACCAGGAAGTCCAGAGACAGCAGCAGAAGCTGGCCTTGCAGGCCCTCTTGTCCCGATCTCCCTCACCCACACAGGATGACCACCATGTTCCTCTGGATCCAATGCCACTGAACACTTCCCCAAAGAGGGATCTACAGACAGATCAGCCCAATCAGGAAGGTAGTCTGGAGATGCAAGTGATGTACTGCACCATAGAGCCACAGAGGCAAAGTTGTCCTGATACACATGGTCCAGAATTTAGGAGACAGCCAGCCAGTTCAAAAGATAGGGCAGCTAATAATGGCCAGAAATCCAGACAAGAAAGGGCCTATGAGGGATTGATGGAGAGAAGCAGCCTGAGCCCTACTGCTCACATAGATGGACATAACAATATGACTCCTGGCCAACTCAATGCACAGTACTCAAAACAAGACTTACAAAGAAGTAGCAAACAGGATAATTCGATGACTGAAAACTGTTTAGCTGAGGGTGACCTAAGCAGAAAAACTTTCTTAAGTGTCCTTGGAAAAGATGGGACTAAGCTAAAATGGCCTTGTGAGCTTGTGCAGTACACCTCAGATGAACCCCGTGTGTCCTACAGCTGCAATCCACTCTTCTTGAATTTCAAATGCACAGAAGGCAAAGAGAAAAGCACAGGGGCAGAGAAGGCAGATGTTTGCAATGTCTCAGATCAACCCAACAGAGCTGAGGAGCAGACcccaaatattaataaagttaaCTTAGGCattttaaaaccaaagaaacacaaacatcGGCGGAGAGGAAGAATTCGTATGTGTAAAGTAAATGCTGTTAAGAGACAACGAGTGGCCTGTGCACTCAGCAGTTTTTCCCAGTCACCTGCTGAAGGACAATTTGAATTCAACCGCACCCCGGCCAGCAAACTGCGCATCAAGCAGAACTGCACTGAGAAGAGGCACAAACTCAGGAACAGGAAGAGACCACAGGATGAAACACAACAACTAAACCTGAAAAGTATAATTGTAAATGCTTTTTCTGCCCCACAACACCGAAGAAGGAAGCGTCAGAGGTTGCCTTCTGCTCTAGGCGTGGCGAAGCACAAGGCTCTTTTGCATGCATCTCCAGTTGGGAGTGGGGATAATTACCAGTGGTATGGCAACTTCTGTAAATCTAAACGGGATGCTAATGTGACCCCACTCAAGTCCAGCTCATGGGGCGTCTTGTCGGAATTGAGGTCTGATAGCGAATGGCCTGCATACCAGTGGGAAAGACATTGTACTTCTTCTGCATCAGCTTCCTTCTATCCCAGGAGGAGAGGATGTAGCCAGCCTTGCTCTTATATCAGAAAATCTAGTTATAGCTTCCCATGCTATGGTTACAGGCACATGTCAGACAGCCCAGACAAAGATACTGAACCCAGAGAAGAATACTGCGATTACAGAGACTCAGAACTCTACAAGGAGAGGAATTACTATGGGGTTTGTGACAGACACTGTATTATAAAGCAGAGATACGGTATAAGAAAGCATAAAAGGCACCTCAGGGAGAACAGATATAGAGATTACCGTAACCCTGCCACAAAAAGAATTTGTTTGTATAGAGTCTATGAGGATGGTGATGATCCACATGACCCAGAACAAGACTGGTGGTGCAAGAGACCAAGCCCTGATCTTAGGAGGCATAAACGAAGAAACAGGTTCTGGTTAAGATCAGTGGTGAATCACGAGAAGGGGGATGAGCAGTCCAGTCCAATGTTCAGACATAGTCCTGCTTCCTCTAGTATCACCAGCATTTCAGACATTAGTGGCGACTGCAGTTCTTATATTAAGCAATCCTATTCTGGGCAGAGTGACTTCAAATGGCCAGCAGAGAGATCTGCCAGGACCAAACATTCTCATTCAAGAGAACACACACCAAGAGAAAAGAGTCCGTCACCAACATCAACATGTATTGATAGATCAGAGGCAGTGCAATCAGACTCCCAACCTGTTATTTCTGATTTCAGAGGAAAGCTGGAACCTGTTGCACAAAATTCCAAATCCAGTGATTTGACAAAGCAGAGCACATCAACTGATAAAAAATTGGCAAATAGCAGAATATGTACTCTTTCACTCCCCTTGATTGGCAAACTCCCCTCGATAAAGAAAGGAATAAGACAGGCAGGAATGCACAAAGTGAAAGGTAGCAGCAGCAGTTGTGGTAACCAagcaaaaacatttctaaatgatCAATCAAAACCTGAATGCCAAGCATTATTTGAAACTGCACATATAGCCACGCAAAATTCCTCATCCCAAGCTTGTCCACCTTTAACTGATCAGAGAACTGCAGAACCTTGTGTAAgcaaagaaacacagaaagatAAGTCCATGTCTCATGAAAACTTCATCAGAGTTCTGGGGAAGACATCAGACAAAACCCCAAATAATCCACCGCAGAGTTGCTTGATCCCTCCCTTAACAGAGAAACCTATAACATTCACGGAGGAAGAGATGGACAAGTACAGAATTCTTCAACTTCAGGCCCAGCAGCATATGCAGCAGAAACATCTCCAAGAGCAACATGACATGCCAAGAAGTTCATTTGTTCCTCAAATGAACCAACTACCTATTCCTGGTCCTGAGCCTTCAAATCAGACTGTCCCAGCTCCCTGTCTCTCATACACAATACATCAGCATGGGGCACTTTCAGCTTTCTCTTCCTTCATCTCCTGTCCTTCGGCCTGCTTGGCATCCCACAGTTCCCCATCTGCCCACCCTCCTCTCCGTCCCAGTCTCTCACAGCCCCACTTCACCCCTCTTCCATTTCCTACTGTGTTCTATCAAGCTTCCCCTGCAGTAATGCTGGCAACACACCCTCTCCACCTTATTTCAGCAGCACCCCTCCACCGTGCACATCCTCATTCTCACATTGCTGGCCTAATGCTTCACCCCCCACCACATGCCTCGTTGCTCCCCTCTGTGCTTACCCCAGCAGCCATGGTAGCTGGCAGGAGTCTGCAAATCCACCCTACACCACAGCCTCTGTTCCCTCAACAGGATCTTCAGCACCACCCTGGTATTGCTAGCTAGGTTTGGTGAAGAAAACAACAAGTCTGAATGGGAAAGAAGAAATGTGACAAAATAGAGAAAGTAAGGGGTCTATCCTTGGTACTCATAAGTGATATTGGACTATGGTCTAGCACtttttgatgtttgtttttgaCTTGGCCAAAGGTTTTAGTGTCTTGCTTGTcttatcatttattttgtacTATAATTGTTTGAATGTCTGTCTGCTATTTGTGTAAATGGTAGTGCAGTCAAGCACTGGCCTTCCTCAAAAAGGTTATCCTCCATAACTGTAAATTCCTTAAGTTCAACTGATGGGAAAATGGTTTACATGGCTTAAAAATGTAACTTGAAATGTAACTTTTGGTTAAATAGCAATTTGACTCAAGTCCCTTTTGAATAGTGGATTGCAAACATTATCTGCATGTCATAAAGCAGGATTGAGGGGTTATTTTTATCTATATCTGAGCACCAGAGGAGATGTCAGAGTGCCAAAACAAATGTATAGATTTGGGCATGTATGAGAATGAAAAGGagggatatacagtatattgaagtGTAAGCTGCAAGTGATTTGTTGTGTCCTGAGACTAAAGCATATTCTATCTTTCAGTACAGTTAAGTGAGGTGAAAGACTGACTTAATAGACTATAATACAGAGTtgtaataatgcaataatacaGTTTTCAATCTATTCAAAGGTCTAAAGCCTTCAATAGTATTTATGTACTGTACTTTCTAatggaaaatacatttaaaaatacattttaacaacATAAGGTGTGTACAACCTGCACTTGTCTGAATTATGTATGTTCCAGAGACTTTGTATTTACTCTTATTTTGTTAGAACCAAAC
>XM_026924098.2
agaggagacaGAAGCagaaagggaggaggaggaggaggaagaggaggaggaaaaagaagGGTTCGAGCTCGCATTTGAAATAAAAGTCGCTGCATTCAGACTGCGCGCGCTCCGTTCCTGCATCCCCGAACTAAGCTTGGTCTCGTGGAGGATCTAGTCCTCTAACTGCCCAGCACTGACTAACACTGTTGCTCTGAAGCTCATGGGCGAGAGAGCGGATGGCGTGCTACTACCTGGTGATTAGCTCCACGCACCTCAGCAACGGACACCTCCGGAGTATCAAGGGAGTTTTCCGCGGTCCGCTGTGCGCGAGCGGCGGCGCAGAATCTCCGgaCTATGCTGAAAAGGAGAAAGCCATAACCAAAGCTCTGGAGAACCTGAAGGCCAACTTCTATTGTGAGCTTTGCGACAAACAGTACCACAAGCATCAAGAGTTTGACAACCACATCAACTCATATGACCATGCACACAAACAGAGACTGAAGGAGCTTAAGCAAAGAGAATTTGCACGCAATGTCTCATCTAAGAGCTGGAAGGATGAAAGGAAGCAAGAGAAAGCACTGAAACGCCTCCATCAAATTGCCCTGCTCAAGCAGCAAAGGGATGGtgacaaggaaaagaaGACAAAGTTAACAGCTGCAGCCCGAGACCAGCAGCAAGAGAAAATAAGGCTCAATGGCAGTGACAAACCAGGATCCAACAACACCCTATACCAAGATCAGAATCACAGCACTCCCTCCCCAAAGGAAGGACCAAAATCCCCAACCACCAAAATCCCTCCATCTGCGCCAGTGCTTACAAATCAGTGCTCTCTTCGGGTTAAGTGTTCCTCACTGCTAGCTCAGACCCCAAAAGGTCACCGGCATGCTAAGGCAGGGATCTCATTCTGTTTCTCCAAACGGGCTCACCTGAAGCTGGACTCCTGTGCATCAGTGTTCACTGATGGCTTGGATGAAACTAGTGACCACCAGGAAGTCCAGAGACAGCAGCAGAAGCTGGCCTTGCAGGCCCTCTTGTCCCGATCTCCCTCACCCACACAGGATGACCACCATGTTCCTCTGGATCCAATGCCACTGAACACTTCCCCAAAGAGGGATCTACAGACAGATCAGCCCAATCAGGAAGGTAGTCTGGAGATGCAAGTGATGTACTGCACCATAGAGCCACAGAGGCAAAGTTGTCCTGATACACATGGTCCAGAATTTAGGAGACAGCCAGCCAGTTCAAAAGATAGGGCAGCTAATAATGGCCAGAAATCCAGACAAGAAAGGGCCTATGAGGGATTGATGGAGAGAAGCAGCCTGAGCCCTACTGCTCACATAGATGGACATAACAATATGACTCCTGGCCAACTCAATGCACAGTACTCAAAACAAGACTTACAAAGAAGTAGCAAACAGGATAATTCGATGACTGAAAACTGTTTAGCTGAGGGTGACCTAAGCAGAAAAACTTTCTTAAGTGTCCTTGGAAAAGATGGGACTAAGCTAAAATGGCCTTGTGAGCTTGTGCAGTACACCTCAGATGAACCCCGTGTGTCCTACAGCTGCAATCCACTCTTCTTGAATTTCAAATGCACAGAAGGCAAAGAGAAAAGCACAGGGGCAGAGAAGGCAGATGTTTGCAATGTCTCAGATCAACCCAACAGAGCTGAGGAGCAGACcccaaatattaataaagttaaCTTAGGCattttaaaaccaaagaaacacaaacatcGGCGGAGAGGAAGAATTCGTATGTGTAAAGTAAATGCTGTTAAGAGACAACGAGTGGCCTGTGCACTCAGCAGTTTTTCCCAGTCACCTGCTGAAGGACAATTTGAATTCAACCGCACCCCGGCCAGCAAACTGCGCATCAAGCAGAACTGCACTGAGAAGAGGCACAAACTCAGGAACAGGAAGAGACCACAGGATGAAACACAACAACTAAACCTGAAAAGTATAATTGTAAATGCTTTTTCTGCCCCACAACACCGAAGAAGGAAGCGTCAGAGGTTGCCTTCTGCTCTAGGCGTGGCGAAGCACAAGGCTCTTTTGCATGCATCTCCAGTTGGGAGTGGGGATAATTACCAGTGGTATGGCAACTTCTGTAAATCTAAACGGGATGCTAATGTGACCCCACTCAAGTCCAGCTCATGGGGCGTCTTGTCGGAATTGAGGTCTGATAGCGAATGGCCTGCATACCAGTGGGAAAGACATTGTACTTCTTCTGCATCAGCTTCCTTCTATCCCAGGAGGAGAGGATGTAGCCAGCCTTGCTCTTATATCAGAAAATCTAGTTATAGCTTCCCATGCTATGGTTACAGGCACATGTCAGACAGCCCAGACAAAGATACTGAACCCAGAGAAGAATACTGCGATTACAGAGACTCAGAACTCTACAAGGAGAGGAATTACTATGGGGTTTGTGACAGACACTGTATTATAAAGCAGAGATACGGTATAAGAAAGCATAAAAGGCACCTCAGGGAGAACAGATATAGAGATTACCGTAACCCTGCCACAAAAAGAATTTGTTTGTATAGAGTCTATGAGGATGGTGATGATCCACATGACCCAGAACAAGACTGGTGGTGCAAGAGACCAAGCCCTGATCTTAGGAGGCATAAACGAAGAAACAGGTTCTGGTTAAGATCAGTGGTGAATCACGAGAAGGGGGATGAGCAGTCCAGTCCAATGTTCAGACATAGTCCTGCTTCCTCTAGTATCACCAGCATTTCAGACATTAGTGGCGACTGCAGTTCTTATATTAAGCAATCCTATTCTGGGCAGAGTGACTTCAAATGGCCAGCAGAGAGATCTGCCAGGACCAAACATTCTCATTCAAGAGAACACACACCAAGAGAAAAGAGTCCGTCACCAACATCAACATGTATTGATAGATCAGAGGCAGTGCAATCAGACTCCCAACCTGTTATTTCTGATTTCAGAGGAAAGCTGGAACCTGTTGCACAAAATTCCAAATCCAGTGATTTGACAAAGCAGAGCACATCAACTGATAAAAAATTGGCAAATAGCAGAATATGTACTCTTTCACTCCCCTTGATTGGCAAACTCCCCTCGATAAAGAAAGGAATAAGACAGGCAGGAATGCACAAAGTGAAAGGTAGCAGCAGCAGTTGTGGTAACCAagcaaaaacatttctaaatgatCAATCAAAACCTGAATGCCAAGCATTATTTGAAACTGCACATATAGCCACGCAAAATTCCTCATCCCAAGCTTGTCCACCTTTAACTGATCAGAGAACTGCAGAACCTTGTGTAAgcaaagaaacacagaaagatAAGTCCATGTCTCATGAAAACTTCATCAGAGTTCTGGGGAAGACATCAGACAAAACCCCAAATAATCCACCGCAGAGTTGCTTGATCCCTCCCTTAACAGAGAAACCTATAACATTCACGGAGGAAGAGATGGACAAGTACAGAATTCTTCAACTTCAGGCCCAGCAGCATATGCAGCAGAAACATCTCCAAGAGCAACATGACATGCCAAGAAGTTCATTTGTTCCTCAAATGAACCAACTACCTATTCCTGGTCCTGAGCCTTCAAATCAGACTGTCCCAGCTCCCTGTCTCTCATACACAATACATCAGCATGGGGCACTTTCAGCTTTCTCTTCCTTCATCTCCTGTCCTTCGGCCTGCTTGGCATCCCACAGTTCCCCATCTGCCCACCCTCCTCTCCGTCCCAGTCTCTCACAGCCCCACTTCACCCCTCTTCCATTTCCTACTGTGTTCTATCAAGCTTCCCCTGCAGTAATGCTGGCAACACACCCTCTCCACCTTATTTCAGCAGCACCCCTCCACCGTGCACATCCTCATTCTCACATTGCTGGCCTAATGCTTCACCCCCCACCACATGCCTCGTTGCTCCCCTCTGTGCTTACCCCAGCAGCCATGGTAGCTGGCAGGAGTCTGCAAATCCACCCTACACCACAGCCTCTGTTCCCTCAACAGGATCTTCAGCACCACCCTGGTATTGCTAGCTAGGTTTGGTGAAGAAAACAACAAGTCTGAATGGGAAAGAAGAAATGTGACAAAATAGAGAAAGTAAGGGGTCTATCCTTGGTACTCATAAGTGATATTGGACTATGGTCTAGCACtttttgatgtttgtttttgaCTTGGCCAAAGGTTTTAGTGTCTTGCTTGTcttatcatttattttgtacTATAATTGTTTGAATGTCTGTCTGCTATTTGTGTAAATGGTAGTGCAGTCAAGCACTGGCCTTCCTCAAAAAGGTTATCCTCCATAACTGTAAATTCCTTAAGTTCAACTGATGGGAAAATGGTTTACATGGCTTAAAAATGTAACTTGAAATGTAACTTTTGGTTAAATAGCAATTTGACTCAAGTCCCTTTTGAATAGTGGATTGCAAACATTATCTGCATGTCATAAAGCAGGATTGAGGGGTTATTTTTATCTATATCTGAGCACCAGAGGAGATGTCAGAGTGCCAAAACAAATGTATAGATTTGGGCATGTATGAGAATGAAAAGGagggatatacagtatattgaagtGTAAGCTGCAAGTGATTTGTTGTGTCCTGAGACTAAAGCATATTCTATCTTTCAGTACAGTTAAGTGAGGTGAAAGACTGACTTAATAGACTATAATACAGAGTtgtaataatgcaataatacaGTTTTCAATCTATTCAAAGGTCTAAAGCCTTCAATAGTATTTATGTACTGTACTTTCTAatggaaaatacatttaaaaatacattttaacaacATAAGGTGTGTACAACCTGCACTTGTCTGAATTATGTATGTTCCAGAGACTTTGTATTTACTCTTATTTTGTTAGAACCAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924097.2 True 4838 mRNA 0.45 4 6654775 6759822
XM_026924098.2 False 4835 mRNA 0.45 4 6654775 6759822

Neighbor

gene id symbol gene type direction distance location
upk1a upk1a coding upstream 328415 6319087 ~ 6326360 (+)
zgc:101716 LOC108256737 coding upstream 342217 6304581 ~ 6312558 (+)
dpys dpys,LOC107686378 coding upstream 570521 6066133 ~ 6084254 (+)
si:dkey-122a22.2 LOC108256697 coding upstream 749358 5796162 ~ 5905417 (+)
sqlea sqle coding upstream 1051762 5593849 ~ 5603013 (+)
tbrg4 tbrg4 coding downstream 269959 7029781 ~ 7043670 (+)
nacad LOC108256401,LOC107579097 coding downstream 290830 7050652 ~ 7065149 (+)
rbm12ba NA coding downstream 361194 7121016 ~ 7123391 (+)
tex10 tex10,LOC107689903 coding downstream 394001 7153823 ~ 7185065 (+)
alg2 alg2,LOC107595974,LOC107706186 coding downstream 626758 7386580 ~ 7390884 (+)
G327391 NA non-coding upstream 812337 5842219 ~ 5842438 (+)
G327385 zfpm2 non-coding upstream 821513 5832993 ~ 5833262 (+)
G327178 NA non-coding upstream 1047676 5605870 ~ 5607099 (+)
G327071 NA non-coding upstream 1112886 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 1624985 5019782 ~ 5029790 (+)
G328161 NA non-coding downstream 189737 6949559 ~ 6961376 (+)
G328208 LOC108256403,LOC108426361 non-coding downstream 263333 7023155 ~ 7029401 (+)
G328222 NA non-coding downstream 285224 7045046 ~ 7045278 (+)
G328260 NA non-coding downstream 368344 7128166 ~ 7136722 (+)
G328313 NA non-coding downstream 507912 7267734 ~ 7268762 (+)
G326997 NA other upstream 1316524 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 1340161 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 1665459 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 1724620 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 1731094 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 464200 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 1141693 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 1612863 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 1628365 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 1855251 8615073 ~ 8665836 (+)

Expression


Co-expression Network