cavin1b (LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710)


Basic Information

Item Value
gene id cavin1b
gene name LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8652432 ~ 8665855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924162.2
GCATTCGACCATTTGTGTTCCTGCACTCCTGCTGCACAGAGCCTTGAAAGCACAGAGTGTGAGCTGACAAGTGTGGTATTTCTCAGGAAAACAGCAGAAAGTGTTCAAACAAGAGGAAGCAACCCAAGGTAAACTCCAGAGCACACACAAGGACACATAAAAAGCTGAAAATCCCATCTCTTTCACTGCTCCATTCTTTTACCTGTGGTTTGAAACTTTTGTCATGGAAGTGCTAGAAGTCCCCAGCCTGCAGCCAGACACTGAGCAGCACAAGACCCTCACTGAGATCTCTGACGATGAGCTCAACCTTCCTCCCtctgatgatgaggaagaggcAACCACAGAGGCCAAATCAAAGGAAGTTGTGGAGAAAGAGGAGGCAGAGGAAGGAGACAAAGGCAATGGCCAGATGAATGGGGTGATGATCCTGGCTCTGCTGGATAAGATCATTGGTAGAGTAGACCAGATCCAGCAGACGCAGGCCGGCCTGGAGGCCCGGCAGCAAGAGATGGAGCGCTCGGTCACTGGGATTGAGGGGGAGCTCACCAAGTTAACCAAGAGTCACACTACCACAGCCAACTCGGTGAACAAGATGTTAGAAAAAGTGCGCAAAGTGAGCGTGAATGTGAAGACAGTGCGCAGTAACCTGGAGAAGCAGGGCAGCCAGATAAAGCGGCTAGAGAGCAATGAGAATGAGCTTCTCAAGAGGAGAAACTTTAAAGTCATGATTTACCAGGATGAGGTGAAACTTCCCTCTAAGACCACAGTGGCCAAGTCCCTGAAAGTGCCCCAGCCAGCAGAGGGTGAGGGCGAGCTGGAGCTCAAAGCTGCTATGGAGGAGGGTGAAGAGGCTGGAGGAGAGAAGGCTCATCTAGACCTGTCGTCTGATGAAGAAGAAGTAGAGATTGAGGAGACCATTGAAGAGACCCGAGCAGAACGCATCAAACGCAGCAGCCTTCAACGGgttcaaaatatcaaaacagtCTTCTCCAAGGAAAAGATGGagaaaaccaaacaaaagaCGAAGGAGAACCTTGAGAAAACCAAGCAAAAAACCAAAGAGAACTTGGAGAAGACACGAATGAAGACCAAAGAAAACTTGGAAAAAACCAAGCAAAAGACCAAAGAGAACTTGGAGAAGACTAGGCAGAAGacacgggagaacctggaaaAGACACGCCACAACATTGAGAAGAAAATGGGCAAGCTCAGCACTCGTATGTCTGTCAACCCAGAGCGTAAAGAGAAGCTGAAAAGCTCGCAGAAGAAGATGGTGAAGTCTTTCACGCCTGATCACACCATTTATGCTCGGTCAAAAACTGCTGTGTATAAGGTACCACCATTCACCTTTCATGTGAAGAAAATCCGTGAAGGGGAGGTGGAAATCCAAGGCACAGAAATGGTGGAAGTGGGTGGGGAAACAGAGGAAGTAGAGAATGGAGTaatggagggaggagaggaagaagagatggagatggagggaggagagatgggagagatggaggagagtgCTGAGATGCTGGAGACAGGAGAAGATTCGGAGCTGGTGCTTGCAGAGCAGGATCATGATAGAGACAGTGACTagatggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaggggcGTAAGCTGGGAGACTGCTGTATACTGCAGATTCAGGTATTAGAGGTTGTTCATAGATGTTCATATGATTCATAGGAATCATAGGTGTGGGTGTatgagtatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtatgtgtgtgtgtctgtgtctgtgtccatgaagaaaagatgagaggaagaaaagatgaGAAGTCTCACCATGGTTGTAGACAAGTTAAAGTCTCATTTCAAATGATTGTTGACAGTATAAGGTTTGGCCTATATACTAGTTTAGGTAAGCTGATTGCTCAGCTAATTTGCAGCAAAGTTTGGGGTAAGGACTCAGTGAAATGGCAACAAGTTCGTTAAGAAGTGTAAGCCAAAACATAAGGATCATGACatttgtaaaaatatgtttaaagaaaaacattcattgTTAATTAATGTACTAACAACACACATACTTATCTACAGCTAGTCTAGTTAGCAAACACTGTTTGACTTAATATACGAACATGTTTCACTTATGCAAGAGAGGAAAACCAACAAATTCTTCTAATATTTTGCGTATATTCATATCAGaaatttctgtttaatattatttctttatttttggaGACACAGTTACTGCATTCTTTTGTTACACTGAaattttgttatgttttattaatctaTATCAATCTACATGTTACATTAATGATTTTAACCACCAGCCCCATGTGGCTGCTTGGCACATTTCTATTAGAGCAATCATCACCACAGCACTATGATCTCCTAACAATACAAATCccacaaacacaacaatatgAATTTTAAAGTCTTGATGACTCTTAGTAAAGACATTCTGTTGGTCTTGGTGCCTATTCCTATCTGTGTTATAACTGAGACtgatattaaaaatttttttacaaagaGTTGGCTGAGGACTAGAatatttgaggaaaaaaatagacattaatttaatttaagtgtTGGATTTATGTTAAAACCAGGGTGTCTTCAGTGGGAAAATTTAATAGTATTTCAAAATATTGTAAactgaagaacaaaaaatatatctgtgtcctttccatttttaaaagaagtttCTACATAATTTCTACTTCTTCTAATGTTACCATTATCTATTGATGAAGCACttatgtattttgtgtatttctcACAAAAATAGTCTGTTTACTTACTACGGTTCATCAACTTGATGTTTTTTCTGATGAGGTAAAAAGGTAAATTTGGGGAAAATATATGGGAAAATTtaaggggaataaaaaaaaagctatttgcttttgaaaatgtagtgataTAAAAAGTGAAGCTGACAAACATTTGTACTTCAATAAAGTAGAAGTATTACCAAAATGTACTTAAGCATGATATGCATAAATagtatttctattttattttatacaccaCTGCTGCCAATATACAGTAACAGTAAGTCTCTGTTCCAGTCATGTGGACAACATGCACTACTTATTTTAATCCCTATTTAGGTGCTGAGTCTGGAGTATTAGAGCACAAACAAAATGTGCATTGCATGGAGTTCCACAGGACTGTGAACGTGTACCACTGCATTATGGagaacattttgtaattttaatctTTGAAAGCATCACCAAGCCACCtttatcttttatttctgttaattaGTCACCATTCATCTTTCCTAGTTGCCAAATACCGTATTTACCTTTTCACATTTTAGATGtgcacattttactttgtttagtCTATATTTTGCTTTGCAACTGATATGTATGTATCTCAGAATGTCTCACTGCATACTAATATGTTAATAAAAGCAGACTCATTCACATTCA

Function

NR:

description
PREDICTED: polymerase I and transcript release factor-like

GO:

id name namespace
GO:0030903 notochord development biological_process

KEGG:

id description
K19387 PTRF; polymerase I and transcript release factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924162.2 True 3464 mRNA 0.40 2 8652432 8665855

Neighbor

gene id symbol gene type direction distance location
rpgrip1 NA coding downstream 5923 8589264 ~ 8646509 (-)
LOC113532599 nipal2,LOC107731686,LOC107594621,LOC107705020 coding downstream 330272 8308408 ~ 8322160 (-)
fzd6 fzd6 coding downstream 367712 8273940 ~ 8284720 (-)
pigm pigm coding downstream 388372 8252752 ~ 8264060 (-)
hus1 hus1 coding downstream 472034 8167058 ~ 8180398 (-)
si:dkey-197c15.6 NA coding upstream 164992 8830847 ~ 8836831 (-)
txndc5 txndc5 coding upstream 278530 8944385 ~ 8955194 (-)
bloc1s5 bloc1s5 coding upstream 296917 8962772 ~ 8967175 (-)
mak mak coding upstream 785519 9451374 ~ 9472412 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding upstream 838282 9504137 ~ 9510189 (-)
G329211 NA non-coding downstream 25983 8619227 ~ 8626449 (-)
LOC117595772 NA non-coding downstream 76308 8573144 ~ 8576124 (-)
G329049 NA non-coding downstream 300791 8351232 ~ 8351641 (-)
G329039 NA non-coding downstream 318256 8333831 ~ 8334176 (-)
G328942 NA non-coding downstream 437178 8212756 ~ 8215254 (-)
G329290 NA non-coding upstream 84987 8750842 ~ 8751044 (-)
LOC117595776 NA non-coding upstream 157335 8823190 ~ 8838994 (-)
G329404 NA non-coding upstream 181630 8847485 ~ 8851312 (-)
G329438 NA non-coding upstream 254425 8920280 ~ 8921013 (-)
G329447 NA non-coding upstream 276282 8942137 ~ 8942358 (-)
sec61b sec61b,LOC102796100 other downstream 1266085 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1590004 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 2268844 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 2674053 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 3674905 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1485642 10151497 ~ 10156800 (-)
G330185 NA other upstream 1856877 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 2257271 10923126 ~ 10930775 (-)
G330379 NA other upstream 2416413 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 3278199 11944054 ~ 11996700 (-)

Expression


Co-expression Network