nmt2 (nmt2,LOC107738873,LOC107681575)


Basic Information

Item Value
gene id nmt2
gene name nmt2,LOC107738873,LOC107681575
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5298302 ~ 5307139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924202.2
GCGGCGCTGTTACTACAGTAAGCTTCACTCGCCCGTTAGAGCCTTTCTCTCCATCCGTGATGGCGGAGGACAGCGAGTCAGCGGCCAGCCAGCAGAGCCTGGAGCTGGACGACCAGGACACCTGCGGCATCGACGGAGACAACGAAGaggaaaatgaacacacacaaggGAGTCCTGGTGGAGACCTTGGTgcgaagaagaaaaagaagaaacagaagaggaagaaagaaaaacctaGCTCAGGAGGAACCAAGTCTGATTCTGCCTCTGATTCTCAGGAGATAAAGaATCCAGCCATTCCCATGCAGAAGCTGCAGGACATTCAGAGGGCGATGGAGCTGCTGTCTACGTGTCAAGGACCTGCCAAGAACATAGACGAGGCCACTAAGCACAAGTACCAGTTCTGGGACACTCAGCCTGTCCCTAAGCTCAACGAGGTGGTGACCACCCACGGGCCGATTGAGCCGGATAAGGAAAATGTCCGACAGGAGCCATATTCCCTCCCGCAAGGTTTTATGTGGGACACACTGGATCTCAGCAATGCTgaagtgCTGAAGGAGCTGTACACGCTGCTGAATGAGAATTACGTTGAGGATGATGACAATATGTTCAGATTTGACTATTCTCCTAACTTTCTCAAATGGGCACTGCGCCCGCCTGGCTGGCTGCCTCATTGGCACTGTGGCGTGAGAGTCTCATCCAACAAGAAGCTGGTGGGCTTCATCAGTGCCATTCCTGCTGACATCCACATCTACGACACGTTAAAGAAGATGGTAGAGATCAACTTCCTGTGTGTGCATAAAAAGCTTCGCTCCAAGCGTGTAGCTCCGGTTCTGATCCGAGAGATCACGCGCCGGGTCAACCTAGAGGGCATTTTCCAGGCGGTCTACACCGCTGGGGTGGTACTGCCCAAACCTGTCTCCACATGCAgGTACTGGCATCGCTCTCTCAACCCAAGGAAGCTTGTAGAGGTGAAATTTTCCCACCTTAGCAGAAACATGACACTACAAAGAACCATGAAGCTCTACAGGTTACCTGATAGTACGCGCACTCCTGGGTTGAGGCCGATGGCGGCTGGTGATGTGCAGCAGGTGACGGCGCTGCTGCAGAAATACCTGAGCCAGTTCCACCTGCAGCCCGTCATGGGGGAGGAGGAGGTGCAGCACTGGTTCCTCCCGCAGGAGAACATCATCGACACATACGTGGTGGAGGGTTCTGGTGGCACATTGACTGACTTCATCAGTTTCTACACGCTGCCGTCCACAGTGATGCACCACCCGCTGCACAAAAGCCTAAAGGCAGCTTACTCTTTCTACAACGTGCACACGGAGACACCGCTGATAGATCTGATGAACGATGCGCTCATCCTTGCAAAACTGAAAGGCTTTGATGTTTTTAATGCTCTGGATTTAATGGAGAATAAGACTTTCCTGGAAAAGCTCAAGTTTGGAATTGGAGATGGGAACCTTCAGTATTACCTTTATAACTGGAAATGTCCCGGTATGGAGCCTGAGAAGGTTGGCCTCGTGCTACAGTAACCAGCTGCTACATTCAGGTCCACGGGACACGGGCAGTagttaaaacaaaacatgaagaaaatcCATTCAGTGAATGAGTTCCATCGTGCAGCTCTCTTAGGTCTCATTTTTGTTATGAGAGATTCTCTCGTTAATTTTTCCTCTCTAAATATCGGCAGAATGTGAAAAGCATCAGCTTCAGACTGTCTTCttcatactgtatacacaatTCTTTTCTTAAGACATGCATcaactattgttttttttttttttaaaatgcacataCAAGATAGACAAGCGCACGTCTTTCAGATGATCGGTTAACTCCCTCAAGcccttttcctttattttgttcCGAATCAGTGTGAAAGAACTAGAACCTGTATAGTTAATATGCGATATTTATTACGTGTTGTGGTTTACAAAGGGGCTGAGAAAGAGGGCAGGGTCACATCCAAAGTCTTTACCGTGGAACTCTGAGTAGTTCTGGCTctctgctgggttttgctgcataCATGTAAAGAAtgtatcactttttttttttcccgaagCACAACATGCTCTTAATAGAGCTTGGATGCTCTAGTGCATGTTGAAGATGATTTAtcctttgtgttttgtgtttagtgtttaggtCATGAGTGTGTGCAAACCTAGAAGAATGTGAAGCCTCGTTTTAAATTTTGTTCACTCCGCAGTGTTTAGTCTGTTATTTCAAACAATTCTGATATTTAGAATTGTATTTaagttatatatatgtatcattCGTCAATCGTAAGGACAAACGTTCAGTGATACATTTGCCGGCATGTGCtgggaattttcacacacaagcacaaaagAAGCAGACGAGACGAACAATCACGTGCGCATCGTCACTTTGATGATTGCGCAGTCTTTCTAGCTCCGCTTTCCCTGTGCTTCTGGTTATATGCAGCTGAAAACTTGCTCATTACTTGATTTAATCGCTGTTACATGGGactttcaaaaagaaaaaaaaaaaaagctttttttataCAGTAGAAAATGCCTTTGTGTTC

Function

symbol description
nmt2 Predicted to enable glycylpeptide N-tetradecanoyltransferase activity. Predicted to be involved in N-terminal peptidyl-glycine N-myristoylation. Predicted to act upstream of or within N-terminal protein myristoylation. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human NMT2 (N-myristoyltransferase 2).

NR:

description
glycylpeptide N-tetradecanoyltransferase 2 isoform X1

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG:

id description
K00671 NMT; glycylpeptide N-tetradecanoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924202.2 True 2557 mRNA 0.46 12 5298302 5307139

Neighbor

gene id symbol gene type direction distance location
fam171a1 fam171a1 coding upstream 3559 5260438 ~ 5294743 (+)
LOC113532775 LOC108256159 coding upstream 39743 5254686 ~ 5258559 (+)
LOC113532776 LOC108256651 coding upstream 43750 5248910 ~ 5254552 (+)
LOC113532629 LOC108256652,LOC108256651 coding upstream 50158 5241135 ~ 5248144 (+)
LOC113532857 NA coding upstream 58130 5236219 ~ 5240172 (+)
crot crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792 coding downstream 10059 5317198 ~ 5331214 (+)
rundc3b rundc3b,LOC107666772 coding downstream 49043 5356182 ~ 5386626 (+)
dbf4 dbf4 coding downstream 93794 5400933 ~ 5411050 (+)
adam22 adam22,LOC107719137,LOC107714333 coding downstream 108793 5415932 ~ 5492739 (+)
mrpl32 mrpl32 coding downstream 239412 5546551 ~ 5547833 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 268512 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 314622 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 373666 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 494243 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 494791 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 234219 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 298731 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 525854 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 535080 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1341141 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 308986 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 368147 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 374621 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 864051 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 903518 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 4070 5311209 ~ 5314614 (+)
G326997 NA other downstream 25129 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1916883 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2594376 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3065546 8372685 ~ 8378896 (+)

Expression


Co-expression Network