rpp38 (rpp38)


Basic Information

Item Value
gene id rpp38
gene name rpp38
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5307441 ~ 5309104 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924203.2
ATGCGACGAAGAAgagcacaaaaacaaatatggcCGCCTCCAGAGACACCTCACACGCTGCAGCTTTAGAGCTCTGTGCTATATTTCGCGGTAGGACAGAAGAGTAAAGATCTCACAGCCACAGTGTTTTTGAAACTGTATTAAAGCGACCGTGTTCAGCGTGGCTGGGTTTAGCTCATGAGAGCAGGATGGCCACACCGGGGAAAGCCacgaagaaggagaaaaagaaaccGGTCCCGGTGAAAACGTCCCTCAACAACCCGTACGACTTAAAGTGGAAACCGTTAGAAAAGGGGCACGCGCGATTCATCCTGAAAACGGTGACGGAGAAATTCGACTCGCTCGAACTCCGGAAACGACACGTGAAAGTGTTTCGCAAGTGGCGAAGCAAAAGAAAGGCTAAGAAAGGAAACTCGGATTCAGTGAACACCAATGAACCGACTCCGGAATCGCAGGACTCCGCTGAACCGACTCCGGAATCGCGGGACTCCGCTGAACCGACTCCGGAATCAAGGGAGCGAGGCTGGACCGATAATCATCTGAGGCACGAGCTCGCCATCGGCATCAACGAGGTGACTAAAGGCCTGGAGAAGAACGAGCTCGCGCTGGTGCTGGTGTGTGACTCGGTGAGACCCGCCCACATGACCAGCCATCTCATCTCTCTGAGCCAAACCCGCTCGGTCCCCGCGTGCCAGGTCCCGGGACTGAGCGCGAGTCTCGCGAGATCGCTTGGTCTCACCAGCGTGCTCGCGCTCGGGTTCAAACGCCAAAGCGGCGCGTTCGCGGATACGATCGCGGCCCTCGCGCCCAAAGTGCCGCCGCTGGGCGTGGCTTGGGTGCCTACAGGGACAGGGGAGTGTGAACCGGAAGTGGTTCAGGTGTCAGGAGAAACCGAGCAGCAGCTTGAAGAGGAGGAACCggggagagggagaaaaagaaaactggaGGAGTCCCCTGAAGTTAAGAAGGACCCGGTCCCTTTACTGCAACCTCttaaagtaaagaaaatcaTCCCAAATCCTTCAAAAATCCGGAAACTAAAgataaagaaagcaaagaagTGACCATTAGTTCAGGGAGTTTTTGAGGTCAACTAACCTGAACATTTTTCAAATCCTGGACAGTTTTTGGCCTCTTGGGGCCCTTGGAATAATGCCATCTTGTTCCTCTTACACATTTTCATCATGCATGATgtcacaatatttaattttgcttaCAACATGGCAATGAAATAGCAAAGCTATCTTATGAGAAATTTGATTTTGAGAACAGTGACAATgttaacagaaatgtgtgtaCAAAAATCCAATTTAACATCTAATGAAGTTAAGAAAAGAGGACATAAGCACTGACACCTGCACAATCCACAATCCTCAACAGTGCATCATGCATATCATTATCATTTACTGAATGTATTAAAACACTGAAGAACATGGTTAAAGAAATTATACAGCTTCTTCTGAGACTGAGTGAACGAGAGTTGATACAGGTTCagatgactttattttattcaaatgtcCATGCTGGTATTCATTGATATATCTTTAACAATCAGATATTTGGGTGGCCACCGTGTTTGACATGGTGCTGGTACAATTTATCTTTTAAGTTCATTTGAAGTTCACACAACCTGcaatggagtttaataaaaatcttcAGAGAAA
>XM_034298072.1
ATGCGACGAAGAAgagcacaaaaacaaatatggcCGCCTCCAGAGACACCTCACACGCTGCAGCTTTAGAGCTCTGTGCTATATTTCGCGGTAGGACAGAAGAGTAAAGATCTCACAGCCACAGTGTTTTTGAAACTGTATTAAAGCGACCGTGTTCAGCGTGGCTGGGTTTAGCTCATGAGAGCAGGATGGCCACACCGGGGAAAGCCacgaagaaggagaaaaagaaaccGGTCCCGGTGAAAACGTCCCTCAACAACCCGTACGACTTAAAGTGGAAACCGTTAGAAAAGGGGCACGCGCGATTCATCCTGAAAACGGTGACGGAGAAATTCGACTCGCTCGAACTCCGGAAACGACACGTGAAAGTGTTTCGCAAGTGGCGAAGCAAAAGAAAGGCTAAGAAAGGAAACTCGGATTCAGTGAACACCAATGAACCGACTCCGGAATCGCGGGACTCCGCTGAACCGACTCCGGAATCAAGGGAGCGAGGCTGGACCGATAATCATCTGAGGCACGAGCTCGCCATCGGCATCAACGAGGTGACTAAAGGCCTGGAGAAGAACGAGCTCGCGCTGGTGCTGGTGTGTGACTCGGTGAGACCCGCCCACATGACCAGCCATCTCATCTCTCTGAGCCAAACCCGCTCGGTCCCCGCGTGCCAGGTCCCGGGACTGAGCGCGAGTCTCGCGAGATCGCTTGGTCTCACCAGCGTGCTCGCGCTCGGGTTCAAACGCCAAAGCGGCGCGTTCGCGGATACGATCGCGGCCCTCGCGCCCAAAGTGCCGCCGCTGGGCGTGGCTTGGGTGCCTACAGGGACAGGGGAGTGTGAACCGGAAGTGGTTCAGGTGTCAGGAGAAACCGAGCAGCAGCTTGAAGAGGAGGAACCggggagagggagaaaaagaaaactggaGGAGTCCCCTGAAGTTAAGAAGGACCCGGTCCCTTTACTGCAACCTCttaaagtaaagaaaatcaTCCCAAATCCTTCAAAAATCCGGAAACTAAAgataaagaaagcaaagaagTGACCATTAGTTCAGGGAGTTTTTGAGGTCAACTAACCTGAACATTTTTCAAATCCTGGACAGTTTTTGGCCTCTTGGGGCCCTTGGAATAATGCCATCTTGTTCCTCTTACACATTTTCATCATGCATGATgtcacaatatttaattttgcttaCAACATGGCAATGAAATAGCAAAGCTATCTTATGAGAAATTTGATTTTGAGAACAGTGACAATgttaacagaaatgtgtgtaCAAAAATCCAATTTAACATCTAATGAAGTTAAGAAAAGAGGACATAAGCACTGACACCTGCACAATCCACAATCCTCAACAGTGCATCATGCATATCATTATCATTTACTGAATGTATTAAAACACTGAAGAACATGGTTAAAGAAATTATACAGCTTCTTCTGAGACTGAGTGAACGAGAGTTGATACAGGTTCagatgactttattttattcaaatgtcCATGCTGGTATTCATTGATATATCTTTAACAATCAGATATTTGGGTGGCCACCGTGTTTGACATGGTGCTGGTACAATTTATCTTTTAAGTTCATTTGAAGTTCACACAACCTGcaatggagtttaataaaaatcttcAGAGAAA

Function

symbol description
rpp38 Predicted to enable ribonuclease P RNA binding activity. Predicted to contribute to ribonuclease P activity. Predicted to be involved in tRNA 5'-leader removal. Predicted to be part of multimeric ribonuclease P complex. Predicted to be active in fibrillar center. Orthologous to human RPP38 (ribonuclease P/MRP subunit p38).

NR:

description
PREDICTED: ribonuclease P protein subunit p38

GO: NA

KEGG:

id description
K14523 RPP38; ribonucleases P/MRP protein subunit RPP38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924203.2 True 1664 mRNA 0.47 1 5307441 5309104
XM_034298072.1 False 1634 mRNA 0.47 2 5307441 5309104

Neighbor

gene id symbol gene type direction distance location
si:dkey-65b12.6 LOC108256587 coding downstream 91141 5205561 ~ 5216300 (-)
LOC117595762 NA coding downstream 128423 5178282 ~ 5179018 (-)
LOC117595761 NA coding downstream 138815 5167096 ~ 5168626 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 210255 5085898 ~ 5097186 (-)
zdhhc11 LOC108256534 coding downstream 222373 5072247 ~ 5085068 (-)
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding upstream 23025 5332129 ~ 5349833 (-)
slc25a40 slc25a40,LOC107666862,LOC107592430 coding upstream 82313 5391417 ~ 5400856 (-)
cldn12 cldn12 coding upstream 149129 5458233 ~ 5463036 (-)
washc5 kiaa0196,strumpellin coding upstream 184125 5493229 ~ 5512596 (-)
LOC113532914 LOC108256385,LOC108440755,LOC103044808 coding upstream 205738 5514842 ~ 5522545 (-)
G326981 NA non-coding downstream 12209 5294732 ~ 5295232 (-)
G326960 NA non-coding downstream 50165 5257051 ~ 5257276 (-)
G326958 NA non-coding downstream 51430 5255795 ~ 5256011 (-)
G326945 NA non-coding downstream 108035 5198223 ~ 5199406 (-)
G326940 NA non-coding downstream 126424 5180816 ~ 5181017 (-)
G326989 NA non-coding upstream 945 5310049 ~ 5310265 (-)
G326995 NA non-coding upstream 5103 5314207 ~ 5314655 (-)
G327100 NA non-coding upstream 83118 5392222 ~ 5393582 (-)
G327362 NA non-coding upstream 429433 5738537 ~ 5739588 (-)
G327505 NA non-coding upstream 526966 5836070 ~ 5836306 (-)
ubr5 ubr5 other downstream 329914 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 960188 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1341326 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1511073 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1903023 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 520370 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 947299 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1747690 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 2069627 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4842393 10151497 ~ 10156800 (-)

Expression


Co-expression Network