azin1a (azin1)


Basic Information

Item Value
gene id azin1a
gene name azin1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4987673 ~ 5001824 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924261.2
TTTAGAGGAAGTAAGTAGCTGACTAGCCATGCTAGGGGTATTTCATCTCCTCCGCCCTGAATAGTGATATCTGCGTTCGGGTGCtgatatattataaatatatatatatatggccaaCAAAATTCGtcattttatctttattgtTGGTGTTCCCTCTATTTTGTAAACATTCCGCCGAAAAAGAGAAGACGGTTTAACCCTTTTCCTGGGAATTTCTCTCGGCTGCTTGTGACTCTTCAGACCTGCACAGGAGCAGTTGTGTGCCGTGAGCAGTTGGACTTCAACGCTGAGCCCCCTTGGGATCCTAGCTGATAACAGGAGGGGTCTGGCTTTCGACCTCACTCTTGGATATCGCTAGGACCCAGGAGCTGTGAGGGCTTTGCTAAATAGGTGACCTGCTTTATGACTGTGTTGTCCCGTGCTTGTGGATGAGGATGAAGGCGACGCTGGATGAATTGCTCTGTTCTGTCGAGCTGCTTGAAGGAGACACTGCTGTCCTTGATGTGATCAAGAAACACATCTCTGACCAAACTCAAACACAAAAGAGTGCGTTCTTTGTGGCGGATCTGGGTGCCATCATTTGGCAGCAGATCCGATTGAAATCTCACATGGACCAGGTTCGACCTTTCTACGACGTGAAGTGtaacagcagtgctgtggtggtTGAGATCCTGGCTGCACTGGGAACCGGCTTTGTTTGCTCCAGCAAGcACGAGTTGGAGTTGGTGAAGAGCTTCGGTGTCCCAGCTCAAGATGTCATCCTGGGTGGAGCCTGCAAGCAACTGTCGCTCATTAAATATGCTGCTAAACATGGCGTCCGGCTGCTGGTGTGCGACAACGAGGCTGAGATGAGGAAGATCGCTCGCTGCCACCCAAATGCAAAGCTGCTGCTGCAGGTGTACACAGCAGGCTGCTGCGACCACGAAGAGACGGCCATGCCGTTCGGCTGCACGCTGAAGGACTGCAGGCACCTGCTGGAGTGTGCAAAGGAGCTCGGCCTGAATGTAACTGGCGTCAAGTTCCATGTCCCCAGCTGCTGCGCTGAGCCCGAAGCCTTCAGTCATGCTGTGTCGGATGCACGCTGTGTGTTCGACATGGGGGCGGAACTTGGATTTGCCATGAGTATCCTAGACATTGGTGGAGGCTTCGATGGAGTCGAGGCTCAGTTAGAAAAGGTGAACAGAGCATTGAAACCCATGCTGGATGTGTACTTCCCTCAGTCAACGGGTGTGTCCGTCATCGCTGAACCTGGAGCCTACTATGTGTCTGCTGCTTTCTCACTGGCTGTGAGCATCATCTCAAAGAAAATGGCAGCTCAGGATGCCAAGCATCACGCACACGATACGCTGCCTGGAAACGATGAGCCGGAGTTCACGTACTTTCTGAACGATGGTGTGTTTGGCTCCTTTGCCTATAAACTGCTGGAAGAATCTGTTCCTGTTCCATCTTTACTCAAGGAGATCTCTGCTGAGGAGCCACTCTTCTCCAGCAGTCTGTGGGGAAGCTCGAACGATGGTCTGGACCAGGTGCTGGAGTCCTGTCTTCTCCCAGAGCTCAGTGTTGGAGACTGGCTAGTGTTTAACCACACCGGAGCCAACAGTCTCGGGGTGATGGGAGAACCCACGCCGCCCGTACACTACATCATCTCTGCGCAAGACTGGTACGAGATTCAAAACTATGGCATCACACTGGACACAGCCCTGAAGAACTTCTCCCTGGTCCCATGTTTTCAGAAGCCCAGTCTGAGCGAGAGCGCCATCTCCACTCCGGCTTAGCGAAGCAAAGCTGCTCTGGGGCTACAGCAGCCTCACTggctaatttaattaaaaaacgaACCTTCTGGACTCTTCTGGGACCAGAATACAATGAGCAAGGTTTCGGAAAGGTTATTGGATCAAGAAGAAATGCATTTACGGTCATGTATATTGTCACAATTGGGTTTAGTCATTTGCGGGATTGATGGTTAGTGCTGTTTACAAACCTGCTAGagtatttaattcagttttataaatatatacaaacacacatatatgtaataatatttcCTTCAAGACGATGTTGGGTGTTATTTATTGAACACGAAGCctcatacctttttttttttttttttttttttttttttttttttttaagaaccaTGTATTTATGATGCTGGTGTTTGAGAAGTCAGCAGGTGGCAGTGCAGCTCTGCCGCTGTGAAGTCTGATATTTTTAGAGTTATTTGAGTCCAGCTCTGTTCTGCTACTGTTCTTAATGCACatgtggtaatttttttttttaatttcctcttaCCATTTCCTCTTAGTTGATTTTCTTGCTGCCATCTTAAAAATGTTCATCTACTTAACAAACATATGTAAAGTTTCATAGATGGCCACCTTAGAAACATGAGTAAACATCTAGAAGGAGTAAGAGCTGACGAGGCTGACTAAATCCTCTATATATCGCTATGTTAAGGCTGGGATAACACTGCTGTCTACTTCTGACAGCTAGTAACTCCTTGCAATTTAGCATGGAGATTCACAAAGAGATTGCTACACTCTCCTCTGCTTGTGCTGCAGTTGCGCTGGATAAGTGTTTGTCAAAAGCAATATCGGAACACAGATGATTAGtgggaaaatattattttctcacGTCCTATCCATGAAGTGTTAGGAATTTGGAGAGCTATGATGCTGTGAAAATGACTCACTGCAAAGTTTTTATCGTAATAGAACTGCAATATTGAATACAATTGCATGGCTTCATTTTAGTAGCGTGGCAAAGCAGATGAATTCCCCCTTATCGTCCTGTTTTCTATGTGAAGCTTCTAGGCATGTGCTGATTCTAAATTTTCATATCGCCGTAATCACTCAAAGCCATATTTGTGTGAACATTAGATCTCAAATCTTAATGTAGTTGAtgagtggaaaaataaaaacaggctTGGTGTCAGACATGTGCTTCTTTAAGGCAAGTTCGCGTTAAAAAGTGTATCTTTCATTCCTCAGATCTACAGCTGCAGAACTAACACCAACATGGGGAAGTGGAGTTAATGAAATTATGCAGTTTATCCACTGACCCACTGCATCCTGTTTTTAAGTCaactgaattacagctggcactgaGAAGTTTAATGCCCCTCTGTACAACAGTGTCAATGAACTATGAGGGATGGAAATAGTTTTCCTGGAAATAATTCACTGTTGCTGTTTCTGCTGGTCAgaatcagtgtttatttattacttgtGCTGTGCTGACATGTCATCTCCAATGTTGACTGTTTTTTGACAGTTCTATGCTCAAGCTACCAAATAaatgttgct
>XM_026924262.2
GCTCTCAAATAAAGGAGCAGCATCTGTTTTGCTCATATTCTGGACACAGAGCCTCGACCTGAGAGATGTGCTGAAGAGCTCGCAGACTGGATTAGAAGATATTCTCACATCATAGCTATAATCCTACAGCTAACAGTGCAGTGCGAGAAATCAGATACAGAGCATGCAAAACATGCATGTGTGAAAAATGTTATGCTTCAGCTGCTTGTGACTCTTCAGACCTGCACAGGAGCAGTTGTGTGCCGTGAGCAGTTGGACTTCAACGCTGAGCCCCCTTGGGATCCTAGCTGATAACAGGAGGGGTCTGGCTTTCGACCTCACTCTTGGATATCGCTAGGACCCAGGAGCTGTGAGGGCTTTGCTAAATAGGTGACCTGCTTTATGACTGTGTTGTCCCGTGCTTGTGGATGAGGATGAAGGCGACGCTGGATGAATTGCTCTGTTCTGTCGAGCTGCTTGAAGGAGACACTGCTGTCCTTGATGTGATCAAGAAACACATCTCTGACCAAACTCAAACACAAAAGAGTGCGTTCTTTGTGGCGGATCTGGGTGCCATCATTTGGCAGCAGATCCGATTGAAATCTCACATGGACCAGGTTCGACCTTTCTACGACGTGAAGTGtaacagcagtgctgtggtggtTGAGATCCTGGCTGCACTGGGAACCGGCTTTGTTTGCTCCAGCAAGcACGAGTTGGAGTTGGTGAAGAGCTTCGGTGTCCCAGCTCAAGATGTCATCCTGGGTGGAGCCTGCAAGCAACTGTCGCTCATTAAATATGCTGCTAAACATGGCGTCCGGCTGCTGGTGTGCGACAACGAGGCTGAGATGAGGAAGATCGCTCGCTGCCACCCAAATGCAAAGCTGCTGCTGCAGGTGTACACAGCAGGCTGCTGCGACCACGAAGAGACGGCCATGCCGTTCGGCTGCACGCTGAAGGACTGCAGGCACCTGCTGGAGTGTGCAAAGGAGCTCGGCCTGAATGTAACTGGCGTCAAGTTCCATGTCCCCAGCTGCTGCGCTGAGCCCGAAGCCTTCAGTCATGCTGTGTCGGATGCACGCTGTGTGTTCGACATGGGGGCGGAACTTGGATTTGCCATGAGTATCCTAGACATTGGTGGAGGCTTCGATGGAGTCGAGGCTCAGTTAGAAAAGGTGAACAGAGCATTGAAACCCATGCTGGATGTGTACTTCCCTCAGTCAACGGGTGTGTCCGTCATCGCTGAACCTGGAGCCTACTATGTGTCTGCTGCTTTCTCACTGGCTGTGAGCATCATCTCAAAGAAAATGGCAGCTCAGGATGCCAAGCATCACGCACACGATACGCTGCCTGGAAACGATGAGCCGGAGTTCACGTACTTTCTGAACGATGGTGTGTTTGGCTCCTTTGCCTATAAACTGCTGGAAGAATCTGTTCCTGTTCCATCTTTACTCAAGGAGATCTCTGCTGAGGAGCCACTCTTCTCCAGCAGTCTGTGGGGAAGCTCGAACGATGGTCTGGACCAGGTGCTGGAGTCCTGTCTTCTCCCAGAGCTCAGTGTTGGAGACTGGCTAGTGTTTAACCACACCGGAGCCAACAGTCTCGGGGTGATGGGAGAACCCACGCCGCCCGTACACTACATCATCTCTGCGCAAGACTGGTACGAGATTCAAAACTATGGCATCACACTGGACACAGCCCTGAAGAACTTCTCCCTGGTCCCATGTTTTCAGAAGCCCAGTCTGAGCGAGAGCGCCATCTCCACTCCGGCTTAGCGAAGCAAAGCTGCTCTGGGGCTACAGCAGCCTCACTggctaatttaattaaaaaacgaACCTTCTGGACTCTTCTGGGACCAGAATACAATGAGCAAGGTTTCGGAAAGGTTATTGGATCAAGAAGAAATGCATTTACGGTCATGTATATTGTCACAATTGGGTTTAGTCATTTGCGGGATTGATGGTTAGTGCTGTTTACAAACCTGCTAGagtatttaattcagttttataaatatatacaaacacacatatatgtaataatatttcCTTCAAGACGATGTTGGGTGTTATTTATTGAACACGAAGCctcatacctttttttttttttttttttttttttttttttttttttaagaaccaTGTATTTATGATGCTGGTGTTTGAGAAGTCAGCAGGTGGCAGTGCAGCTCTGCCGCTGTGAAGTCTGATATTTTTAGAGTTATTTGAGTCCAGCTCTGTTCTGCTACTGTTCTTAATGCACatgtggtaatttttttttttaatttcctcttaCCATTTCCTCTTAGTTGATTTTCTTGCTGCCATCTTAAAAATGTTCATCTACTTAACAAACATATGTAAAGTTTCATAGATGGCCACCTTAGAAACATGAGTAAACATCTAGAAGGAGTAAGAGCTGACGAGGCTGACTAAATCCTCTATATATCGCTATGTTAAGGCTGGGATAACACTGCTGTCTACTTCTGACAGCTAGTAACTCCTTGCAATTTAGCATGGAGATTCACAAAGAGATTGCTACACTCTCCTCTGCTTGTGCTGCAGTTGCGCTGGATAAGTGTTTGTCAAAAGCAATATCGGAACACAGATGATTAGtgggaaaatattattttctcacGTCCTATCCATGAAGTGTTAGGAATTTGGAGAGCTATGATGCTGTGAAAATGACTCACTGCAAAGTTTTTATCGTAATAGAACTGCAATATTGAATACAATTGCATGGCTTCATTTTAGTAGCGTGGCAAAGCAGATGAATTCCCCCTTATCGTCCTGTTTTCTATGTGAAGCTTCTAGGCATGTGCTGATTCTAAATTTTCATATCGCCGTAATCACTCAAAGCCATATTTGTGTGAACATTAGATCTCAAATCTTAATGTAGTTGAtgagtggaaaaataaaaacaggctTGGTGTCAGACATGTGCTTCTTTAAGGCAAGTTCGCGTTAAAAAGTGTATCTTTCATTCCTCAGATCTACAGCTGCAGAACTAACACCAACATGGGGAAGTGGAGTTAATGAAATTATGCAGTTTATCCACTGACCCACTGCATCCTGTTTTTAAGTCaactgaattacagctggcactgaGAAGTTTAATGCCCCTCTGTACAACAGTGTCAATGAACTATGAGGGATGGAAATAGTTTTCCTGGAAATAATTCACTGTTGCTGTTTCTGCTGGTCAgaatcagtgtttatttattacttgtGCTGTGCTGACATGTCATCTCCAATGTTGACTGTTTTTTGACAGTTCTATGCTCAAGCTACCAAATAaatgttgct

Function

symbol description
azin1 Enables ornithine decarboxylase activator activity. Involved in negative regulation of protein catabolic process and positive regulation of polyamine transmembrane transport. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Implicated in esophagus squamous cell carcinoma; hepatocellular carcinoma; and liver cirrhosis.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924261.2 True 3305 mRNA 0.45 12 4987673 5000553
XM_026924262.2 False 3284 mRNA 0.45 12 4987673 5001824

Neighbor

gene id symbol gene type direction distance location
si:ch211-107n13.1 LOC108256083 coding downstream 521227 4450350 ~ 4466446 (-)
ago1 ago1,LOC108256363,LOC103040377,LOC103367053,LOC102230823,LOC107379324 coding downstream 612779 4350718 ~ 4374894 (-)
si:dkeyp-97a10.3 LOC108256724 coding downstream 713860 4261821 ~ 4273813 (-)
LOC113532587 LOC108256689 coding downstream 730701 4250942 ~ 4256972 (-)
LOC113532948 NA coding downstream 742813 4242354 ~ 4244860 (-)
spire1b LOC108256729,LOC108426375 coding upstream 17949 5019773 ~ 5045469 (-)
LOC113532791 tppp,LOC107565752,LOC107601987,LOC107754442,LOC107677661 coding upstream 56029 5057853 ~ 5070186 (-)
zdhhc11 LOC108256534 coding upstream 70423 5072247 ~ 5085068 (-)
brd9 brd9,LOC107754443,LOC107659091 coding upstream 84074 5085898 ~ 5097186 (-)
LOC117595761 NA coding upstream 165272 5167096 ~ 5168626 (-)
G326830 NA non-coding downstream 19126 4967298 ~ 4968547 (-)
G326630 NA non-coding downstream 485072 4501589 ~ 4502601 (-)
LOC113532978 NA non-coding downstream 576272 4408491 ~ 4411401 (-)
G326597 NA non-coding downstream 592899 4385075 ~ 4394774 (-)
G326557 NA non-coding downstream 793426 4192950 ~ 4194247 (-)
G326875 NA non-coding upstream 103008 5104832 ~ 5105966 (-)
G326940 NA non-coding upstream 178992 5180816 ~ 5181017 (-)
G326945 NA non-coding upstream 196399 5198223 ~ 5199406 (-)
G326958 NA non-coding upstream 253971 5255795 ~ 5256011 (-)
G326960 NA non-coding upstream 255227 5257051 ~ 5257276 (-)
ubr5 ubr5 other downstream 10146 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 640420 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1021558 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1191305 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1583255 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 827650 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 1254579 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 2054970 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 2376907 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 5149673 10151497 ~ 10156800 (-)

Expression


Co-expression Network