cdh17 (LOC108256708)


Basic Information

Item Value
gene id cdh17
gene name LOC108256708
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8140082 ~ 8156293 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924274.2
TTAAAGTTTCACTGTAGCAGGAAGTTCTACAAGCTAGTGAGCTTCATTCTGTCAGTGCTCAGCCAGAAGGGGATCTGTCCTGACAGatattatttctcattatggCCAGCGCACAGCTGCTGCTCCTGACTCTTCTTGTCAGCTCtGCTTACGGAGTTGGTCTAGAGGATAAGAAAGGACCATTAGATCATAAAGTCTTGGATGTGCCAGAAGCCACACCAGTGCCATATGCTATTTTTCAGTTTACATCCACAGCAGAGGGCGTGTCATCATATCGTTTGAGTGGTGAGACAGAAGGGAAGATTAACATATCTCCTGATGGTTGGCTGTACCTGGAAGAAGCACTGGAATGGAGCCCAGGAAAAAGATACAGTCTAAGTATTGAGGCACTTTCAGATGAGGATGACATCGTTGATGGACCTTACACAGTTGTTCTCCAAGTTGTGGATGTCAACAACAATGCTCCTGTCTTTAATCAGAGCCAGTATAGTGGAACGATCAGAGAGCATTCACCTGCAGGAATTCCATTTGTACATGTGGTCGCCACTGATGCTGATGATCCGGACACACCCAATTCACAACTGACCTACAGCATTGAGAGCCAAATCCCCAACACTAATGGAGAAGCTTTCTTTAGCATCGACCCAAACACTGGGGAAATTTCCACCACAGAGGAGGGAGCTGCATCACTAAAAGCCAGAACTGGAGTGAGGTACAGTCGTGGAGAAACCAGGGGGAGTGTTGACGTTCTGAAGAGGAAGTTTGATGAATTCTGCCTTCCAAGGAACAACATACCTCTTGACGACAACCCATTTTTCACTTGTGTTCAACGTGCTGAGAACAGGCGAATGAACGTCATACAGGATCCAGACTACACTCTAATTGTGCGAGTGGAGGATTTAGGTGGAGGGGCTCCAGGTGCGCTGAGCAGCGTCACAAGGGTCAATATTGCTGTGATTCAAAATCTGTGGATTTCACCTGGACCTATCAATATCATGGAGAATTTAGTAGCGGAATACCCCATGTTGCTTACCACGgtgCGTGCCAATGACCCCAATGCACTGTACAGGTTGGtgcagaaggagaaagaggTTCCATTTCCTTTCACTATCAATGAAGATGGAGAGATCTACATCATAGAGCCACTGGATAGAGAGATCAAGACCATGTACATCCTGGTAGTCTTGGCTGAGGATGAGGAAGGCGTCGAGCTGGAATCTCCTATGGAGATCCAAGTTGAGGTGGGAGATGTAAATGATAATGCTCCTAAGTGTGTCAGCGACAAAAGTGTGTTTGAGGTGCAGGAGAATGAGAAAGTTGATAGCCACGTCGGAGATCTGTTGGTTCATGATGCCGACAAGGAGAACACACCAAACTCGCTGCTGACCTACAAGCTTTTGAGCCAGAGTCCCACCAATCCATCTGACAGAATGTTCAACATTGACCAAGCGAGTGGAAGGATCCAAGTGGCCAAAAATAACTTCCGTAGGAAGGATGTGCCACAATATAACCTTAAAGTTTCAGTTACAGATGGAGTTCACAGCACAGAGTGTGATGTTGTCATCAACATCATCGACCTCAATAACGAGGTCCCCATCTTTGAGAAGAATGATTATGGGACATACAGTGTTCCAGAATTAGCTGAAGTCGGGGACACTCTGCTCACTGTCAAGGCTACGGATGCTGATGATCCAGGGACAGGCAGCTCTAAGGTGGAATACCACATCACTGCAGGTGATCCGGACAATGTATTCGCCATAGAAGTTGATGATGCCACTGGAGAGGGCAGAGTCTACATAGCACGGccatTGGATTATGAAGTTCAGTCTGCCTATAAGCTTCGCATTGATGCCCGTAATCCTGAGCCGCTGATCGAGGGGGTGGACTACGACAATCAGTCCACCACAGTCGTTGTCATTGAGCTGGTTGATGTGGATGAGCCTCCAGTGTTCACTGTAGATACTGTGAATGTCAACATCCCGGAAAATATCACCGTAGGAACCACCATCTTGACAGCCAATGCTAAAGACCCAGAGGGACATAAGATCATGTTTAAGCTGGAGGGAGATGAGCATGGCTGGCTGGACCTGAATACTGAATCTGGGGAGTTGAAGACTAAagcagagatggacagagaagtgCTGGATAAACTCACTGTCCGAATCATCGCATACGAGTCAGAGGGTCAGATGCAGGAAACTGAGAGGGAAGTGTCCATCCAGGTGATGGATGTAAATGATAACTACCCTAAGCTACAGAAGACGCAGGGATTCATGTGTGTGAAGAAGCCAGAGCCCTTGGTGTTGACTGCCGTGGACGGAGATGCTGAGCCATTTGGAGAACCCTTTACCTTCACACTGCAGCTGGGCCGCAAATCTCCTAACTGGGAGATCACACCAGTAAACGGAACCGCGGCTAAGCTCGTGCTGAAGAAGAAGCCCACCACTGACCAGACCTTCAGCATCCCTGTCAACATCGTGGACAATGCTGGCGTAGGTGTAACACAGAAGTTCGAAGTTCGAGTATGTAACTGTACTGAGCTGGGTTACTGTTACGTGGAGCCAGGGACTCATGCCTGGAAGTTTAGCGTGTCCACTACAGCGGCCATTCTTGGAGGAGTATTGGGATTTATTGTTTTGTTCCTGGTAATTGTAATATGCCGCATCAAGAAGAAAGATAAGAAGAAGGAGACAGCGACGGCTGATGGGGAAGCCAACTCCATGCTCTAGACGCCATGCTcagttacacacatacacacaccggATTGGTCAGTTCACATGCAATGTTGATACCGCAGGCCTTTTTGAACTCAGGCAGGTAATTTAAAGTAAACAGACTGTTGAACTGTGTAATACTGTGACATACTTTAGGAAGGGAATTGGGCTCAGATAGCATCCAGGTGACTCTCCCATGCAGTGTATTAGGCTCTCTCAAACATCTCAACCAAATTACACCTTGATTAATACTAAATGTTTAGCTAGCTCTTagaataaatgctttaaaacagaaatacaaattACCAAGGGTTTGATGTCATACTCCATCTGCTCTCCATCGTATAATCTCTCCATCTGTAATTCCTCACCTGTATGGCCAGTGTTGTTTGctgctgatgattttttttttcctgagtgtatatgtgtgtatgtgtgtgtatgtgtgtgtttgtgtgtggggggtCAGGGAAGGTTTGTGCTACATTGATCTGTGCTCTATTAGGATGTACTTGATTGTAGTATTATAAAGATAATACACTAGATGCTGTAATACTGTGtagattaatatatttattctcATGAACATAATcagtcaaaatgtaaaaattttattaCCCTTACCCTCTCGACCCAAACCTGGTTGAAGTCAGAATTAAGAATGGAAAGCCAAGCTATACTGTACTACATTAACTATAAGTAGGGCATTTGGTTTTGtcttaataaacatctccttggATAGAGAAGA

Function

NR:

description
PREDICTED: cadherin-17-like

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06811 CDH17; cadherin 17, LI cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924274.2 True 3462 mRNA 0.46 19 8140082 8156293

Neighbor

gene id symbol gene type direction distance location
rad54b rad54b coding upstream 6507 8111413 ~ 8133575 (+)
LOC113533047 fsbp,LOC107593680,LOC107723453,LOC107687811,LOC105897825 coding upstream 19182 8115550 ~ 8120900 (+)
virma kiaa1429,LOC107687804,LOC107595823 coding upstream 44573 8072467 ~ 8095509 (+)
epb41l4b epb41l4b,LOC108256379,LOC101068824 coding upstream 94857 8009901 ~ 8045225 (+)
ptpn3 ptpn3,LOC108256378,LOC108443284,LOC107723490 coding upstream 130312 7971618 ~ 8009770 (+)
LOC113532572 LOC108256701 coding downstream 27799 8184092 ~ 8190259 (+)
LOC113533036 anks6,LOC103376383 coding downstream 39948 8196241 ~ 8214829 (+)
LOC113532619 ahrr coding downstream 62247 8218540 ~ 8250823 (+)
mrpl17 mrpl17,LOC107657704,LOC107699486,LOC107595760 coding downstream 108726 8265019 ~ 8268963 (+)
pop1 pop1 coding downstream 129950 8286243 ~ 8298470 (+)
G328755 NA non-coding upstream 3919 8135517 ~ 8136163 (+)
G328754 NA non-coding upstream 4627 8135080 ~ 8135455 (+)
G328750 NA non-coding upstream 34620 8105262 ~ 8105462 (+)
G328620 NA non-coding upstream 481003 7657141 ~ 7659079 (+)
G328441 NA non-coding upstream 747634 7392241 ~ 7392448 (+)
G328944 NA non-coding downstream 60153 8216446 ~ 8216654 (+)
G328995 pigm non-coding downstream 101232 8257525 ~ 8264036 (+)
G329042 NA non-coding downstream 180059 8336352 ~ 8336582 (+)
G329126 NA non-coding downstream 538110 8694403 ~ 8699160 (+)
G329288 NA non-coding downstream 592527 8748820 ~ 8749033 (+)
LOC113532663 NA other upstream 237474 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 892803 7224022 ~ 7247279 (+)
G326997 NA other upstream 2801831 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2825468 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 3150766 4984415 ~ 4989316 (+)
osr2 osr2,LOC106591507 other downstream 216392 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 231894 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 458780 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 612452 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 695111 8851404 ~ 8922793 (+)

Expression


Co-expression Network