LOC113532732 (LOC108256179,LOC108433877,LOC108433850,LOC108256180,LOC108433878,LOC103039774)


Basic Information

Item Value
gene id LOC113532732
gene name LOC108256179,LOC108433877,LOC108433850,LOC108256180,LOC108433878,LOC103039774
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2252123 ~ 2261887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924294.2
AATAGTGAAATTTTGATCAAACTAAATATATCGATGGCAATCAGTCTtgtattttttcagtttctttggTCTTAACACTACACAATGCAATGATATgatgataagataagataagaagaTGTATGAATTTAGTCAAACATGTTTAATCAAGAGAATTATGCATATACTATACGTGTCTGAGCACTTTTGTATTCCGTCGATCACATATTTAAGACAAAATGGTAGTGTGTTTATAAACATCATTTGTACCATATGCTGTTGAATATGCTGGTAGActcattattaatgattaacCTAACCATTTTATCaattatattaaaacatattcCAACTATTGTCTAGCTAACTGTTGATTTATTAACCCATGCTGTCTCTTTTATATGGGTTCATATCATTCATCCAAAATACTACAttgcaaacaaaaaacaaacaaacacaaaaacaaacaaaaagcaaacaaacaaaaataataaaacaggcCATTCaaatttttaaagtatttttagcCTCAAAGTCTTGCAACTTAGCTTTTGAAAATAAAGTCAACACAGTGTCAACCTCAGGAAGGGTTAAAACTGCGAGGATTTGATCCTTGGTTCTTGAGCATGGGTGTGCCTCACGTTCAGCTGTAAAAGGGAAACTACATGAAGTCGGGTTAAGcgcacatctctctctctttctcttattctCCCGCGACTTGAAGTGATCTCACCTTTTTCGACTCAGGCAAAGCAAAAAGGCTAAAATACATACCGCAATCAAGGACCGACTGTagattaaaaaaatggcagaagGCCTGCAGAAACTTATTGCATCCAAGAAGGATGTGGTGGAGAATGTGATGGAGGTATTTGAGCAGGGAACAGAGGTGTTGGCCAGCATCGCTGGAGATCTTTTCCCTGTTTTCTCCATCGCTGCTCCCATTGTGAAGCTGGCACTTGATAATGTGGAGAGCAAGGAAGCGGAATACATGAAAGAACAGTTTCAGAGGGTCCGTGAGCGTCTGGAGGTTGTATCAGAGGAGATCCAGCGCATAAACGATGAGGTGAGAAAAAGCGGTATGGACGCAGCTTACTTCTCAGTGGAGGAGAATATAACCAATCAATTTCGCAAGTACATGGACATACTCAATGCGAAGCCAAAGTTTCGAGAGGCCAAGAAGAAACAATTCCTGGACCACTTTAGCAAGTCTGGCGGAGACAAAAACTTGCACACACTTTATGGTGCTGTGACAGGAGATAGCTTCTCGGGAGAGTCCGTGCTTGAGATCACTCTCAACTATGAACAAAAGAGCCGGCGGGCAGTGGAGGACTTCTGCGCCAGACTGAAGCAGTTGTTCTGCATAGGTCTCATCGCTTTGATGGGACACACAGCTCTGAAAGGTGGCGATGACGAAGAGGAGCTGCTCCGAAACTGGGCCGAGAAGATGAAGGTGGTCCAGTCAAAAATGAATGTGATCATTGAAGACTGCATCAATAGCTTCCCGAGTCAGGCTGAGATCGATATCAAGCGCCTGGTGAGGAACCACAAGGACAAAAGCAACCAGCAGCTGGCTGACATGATCATCGAGAACCTGAAAGGGAAGTACGACTGGGTGAGCTGGTCAGTTCGTGTCTTTAACTCGCCCAAGGGCTTGTTCACCAGCAAGAAGGACTTCCAGTGTGCCACAGGCAAGAGCAGGTTTCAGGTGCCTTCATCAGATGAGAATTTGAATGTTGTGGTATCCTATAGTGCCTCTCCTGAACCTCTAGACAAAGCTCAGCTCCAGCAGTTGGTGCAGGACCAGAAGAAAGTCACAGTTCCAGGGATTGCAGAGCTTGTCTTTGAGAAGACCCCTAAGTGTGTGGTCCATGCTGTCAAGACGTCATGCAAAGAAATGGCTTACTCATGGAGCTTTCAGGATGAGCTTCACTTCTTTGAAGAGTTCAAGAACTTTTACTTGTTTGTTCATTCTTCTTAAGCCACAGACCACAGTTAAGAAGAGCAAACATACGACAGATTTGTAGTAGAGTCAAAACATCTTTATCTACTATAAAAAAATACTGACTATTTTGATAAGCCACTAACCATGTTCTCTTTTAATGCTGAAGATTTTTGAATGCTGTGTGAGTTTTTCAATCTTTGTCAGTTATAAACACTGCATTTGCAGTTTTAAAAAGTGCCTTATGATTTGTATCTCAGTTATATCTTTGGGTAATTTTGTATGTCTTGGGTAAAAAAATTACTGATTAGCTTTATGAAGGCTATTAGGCCATCCTGAAATAAATCAGTATCAGGATCTAATGAAATTTAACAAATTCTCCTGGATGCAATAATGCTGttcattgtattttaaaattttgcaaAGACTTCTTCATGTCTTCTTCATTACAGCTGTTTGTCCCTGTGTGTATGCTATGGTGTGTTTACCCTCACAGACTTGGGTTCTTAAGGACACTATCAGACCTTGAATTGCTGCGTTAAAACCTGGACATGTAAGAACATgtcatgaaaggaaaaaaagttgtTTCCTTATGAACCCTTTCCAGCCTGTTGGACTGCTGAACtgtcacaggttttttttttttattgcatactGATTAAAATATGCCTCCAATTTTACTTAACTAATATACAAACCCAGAATTATACAGATTTTTTATGCTTTGTTCACCCTGGATTCAGATATATCAATAAGATGCTACATGTTGGTCTtgacatgatttaaaaatatcatgcaAAGGAGTGCACAATTCTCATCTGTACTCCAAACAACCATTCAGCTGCTATTCAGATATTTTACACTAATATATGATGGTCATGTGATTTTTAGttaaacacactgctgttacCAATCTGACTTTCTATTCTTACCAACCAGCTTAGGAaacatttctttccatttcacTACAAAATTACACAAGTATTATGTTTTCAGTTATACGGTCAATCAGTAATAACACTATAGCAGTAGGTATGCATTGTAATTTTTGCCtcctaaatatatatttttttgtattaaaggAGAAAGTAAACAGCATTTATATCAAATTTCATTTGAGACTGATTCTGGGTCAGTTAGTTATCTAAGTCAGATTCAGCAAGTGTGAGCAAGCAATCTGAGCTAGTTGAGCAGGTTATACACCTGAAATGCACCTTTGATTAATTACCAAAATGTCTACGCTTTTTACAAGACTTTCATACTGGTtctcttttgtttgttcttcCACTTATTATTTTGCAGTGGAGGTTTTTTCAGCTGTCCAACAACACCTTTGCTTACAGCTTATGGCTGATTGTAGCTCACAGTACCCCTTTATGAGGTTTAGCATTTTCAAACCTGTCATACCTTTTCATGATATAAACTTTACATTGTAAATGCAGAGAAATATACACAGTACAATATAAA
>XM_034297875.1
GCTCTTCAGCACAGCTGGGCTTCACTGGAACACCACAGAGGGTACCTCTGCACATTTCACCAACTAACTAGAGAGCACTTGCCTCCCTTAAAGGATTAAGACAGGACCTCTTTCCCGGCATCCAATATGAGTCGTGTGGAAGAATGGGTTCTAGAGAACAAGGACAAGATTGAAAAAGGCGTGGAGATCATGAGCCAAGGCTGTGAGATCCTGGCAGCCACTGTAGGCCAGTTCCATCCCATCCTGGAGGCAGTCTTTGTGGCCTCGGCTGAGCTCCTTAGCAACCCAGAGGGCAAAGAGGCTAAGTATCTTGCCGAGCAGTTCGAAAGGGTCAACCAGAAGTTGGAAGGGATCCAGGATGAGATTGAAAAAATAGCTCTGGAGCTGCAGAGAACGTCACTGAACAAGCAAAACTTTGACCGTGAGGCACAGATGATCAGTCAGTATGAAAAATTTCAAGAGTTTGTCACCGCCAAACCCAAGTtcaaggagaagaagaaggagaagttTCTGAGTCACTTTGAGAACACTGATCGTGACGTGAACCTCGATGGTTTGTACAACGCCATCACTGGAGAGAACACCTCTGGAGATGCGATGCTGGACACGATACTGGTCACTGAGCAGCGGAGCAGGAGGGCAGTGGAGGAATTCTGTGCTCGCCTGAAGAAGCTGTTCGTGGTTGGGATCATAGCAGTGATGGGCTACACTGCACTAAAGGAAGGGACTGTTGGAGAGGATATGGTGAAGAAATGGCAAGAACGCATGGAGGATGTGGAGAAGCGCATGAAGGTGGCAGTGGACGAATGTGTGAACAACTTTCCTGCACAAGCCAAGACGGATGTAGAACACATGCTCGTGGAGAGGCAGAGCCATGTCGACCCTGAGTTTACTAAATTTCTGCTGGATGCCCTTGCCAAGAAGTATGACTGGGTCTCCTGGTCAGTTAGGGTCTTTAATCATGGTGGCATTTTTTTCTGGAATTGGCTGGCTGGCAAGCGGTACCATGGAAGTGGAGGAGGTATCAATTATTTTGACCTTTtgaccaaaaacaaaataaggatTGTGGTGTCGTTCACTGCGGACCCTAAACCACTCAACAAGGTCCAGATAAAGGATCAAATAGAGAACGAGAGGCTGAAAGGTGACATGATATCTGTGGCTGAGTCTCTGTGCAAGAGTCTTCCCAACTGCCTTGTGCATGCTGTCAGTCGCTATAAGAGAGTGGAGGAAGCCAACAATTTTGACCCTGAGTGCTATTATTATGCAGTTCACAAAAGGGCACACATTTGTATCCACTCAGAATAGTGAAATTTTGATCAAACTAAATATATCGATGGCAATCAGTCTtgtattttttcagtttctttggTCTTAACACTACACAATGCAATGATATgatgataagataagataagaagaTGTATGAATTTAGTCAAACATGTTTAATCAAGAGAATTATGCATATACTATACGTGTCTGAGCACTTTTGTATTCCGTCGATCACATATTTAAGACAAAATGGTAGTGTGTTTATAAACATCATTTGTACCATATGCTGTTGAATATGCTGGTAGActcattattaatgattaacCTAACCATTTTATCaattatattaaaacatattcCAACTAT
>XM_034297876.1
CAGAGGCTGCAGCTCTTCAGCACAGCTGGGCTTCACTGGAACACCACAGAGGGTACCTCTGCACATTTCACCAACTAACTAAAGAGCACTTGCCTCCCTTAAAGGATTAAGACAGGACCTCTTTCCCGGCATCCAATATGAGTCGTGTGGAAGAATGGGTTCTAGAGAACAAGGACAAGATTGAAAAAGGCGTGGAGATCATGAGCCAAGGCTGTGAGATCCTGGCAGCCACTGTAGGCCAGTTCCATCCCATCCTGGAGGCAGTCTTTGTGGCCTCGGCTGAGCTCCTTAGCAACCCAGAGGGCAAAGAGGCTAAGTATCTTGCCGAGCAGTTCGAAAGGGTCAACCAGAAGTTGGAAGGGATCCAGGATGAGATTGAAAAAATAGCTCTGGAGCTGCAGAGAACGTCACTGAACAAGCAAAACTTTGACCGTGAGGCACAGATGATCAGTCAGTATGAAAAATTTCAAGAGTTTGTCACCGCCAAACCCAAGTtcaaggagaagaagaaggagaagttTCTGAGTCACTTTGAGAACACTGATCGTGACGTGAACCTCGATGGTTTGTACAACGCCATCACTGGAGAGAACACCTCTGGAGATGCGATGCTGGACACGATACTGGTCACTGAGCAGCGGAGCAGGAGGGCAGTGGAGGAATTCTGTGCTCGCCTGAAGAAGCTGTTCGTGGTTGGGATCATAGCAGTGATGGGCTACACTGCACTAAAGGAAGGGACTGTTGGAGAGGATATGGTGAAGAAATGGCAAGAACGCATGGAGGATGTGGAGAAGCGCATGAAGGTGGCAGTGGACGAATGTGTGAACAACTTTCCTGCACAAGCCAAGACGGATGTAGAACACATGCTCGTGGAGAGGCAGAGCCATGTCGACCCTGAGTTTACTAAATTTCTGCTGGATGCCCTTGCCAAGAAGTATGACTGGGTCTCCTGGTCAGTTAGGGTCTTTAATCATGGTGGCATTTTTTTCTGGAATTGGCTGGCTGGCAAGCGGTACCATGGAAGTGGAGGAGGTATCAATTATTTTGACCTTTtgaccaaaaacaaaataaggatTGTGGTGTCGTTCACTGCGGACCCTAAACCACTCAACAAGGTCCAGATAAAGGATCAAATAGAGAACGAGAGGCTGAAAGGTGACATGATATCTGTGGCTGAGTCTCTGTGCAAGAGTCTTCCCAACTGCCTTGTGCATGCTGTCAGTCGCTATAAGAGAGTGGAGGAAGCCAACAATTTTGACCCTGAGTGCTATTATTATGCAGTTCACAAAAGGGCACACATTTGTATCCACTCAGAATAGTGAAATTTTGATCAAACTAAATATATCGATGGCAATCAGTCTtgtattttttcagtttctttggTCTTAACACTACACAATGCAATGATATgatgataagataagataagaagaTGTATGAATTTAGTCAAACATGTTTAATCAAGAGAATTATGCATATACTATACGTGTCTGAGCACTTTTGTATTCCGTCGATCACATATTTAAGACAAAATGGTAGTGTGTTTATAAACATCATTTGTACCATATGCTGTTGAATATGCTGGTAGActcattattaatgattaacCTAACCATTTTATCaattatattaaaacatattcCAACTAT
>XM_034297877.1
CAGCTCTTCAGCACAGCTGGGCTTCACTGGAACACCACAGAGGGTACCTCTGCACATTTCACCAACTAACTTGATCTCACCTTTTTCGACTCAGGCAAAGCAAAAAGGCTAAAATACATACCGCAATCAAGGACCGACTGTagattaaaaaaatggcagaagGCCTGCAGAAACTTATTGCATCCAAGAAGGATGTGGTGGAGAATGTGATGGAGGTATTTGAGCAGGGAACAGAGGTGTTGGCCAGCATCGCTGGAGATCTTTTCCCTGTTTTCTCCATCGCTGCTCCCATTGTGAAGCTGGCACTTGATAATGTGGAGAGCAAGGAAGCGGAATACATGAAAGAACAGTTTCAGAGGGTCCGTGAGCGTCTGGAGGTTGTATCAGAGGAGATCCAGCGCATAAACGATGAGGTGAGAAAAAGCGGTATGGACGCAGCTTACTTCTCAGTGGAGGAGAATATAACCAATCAATTTCGCAAGTACATGGACATACTCAATGCGAAGCCAAAGTTTCGAGAGGCCAAGAAGAAACAATTCCTGGACCACTTTAGCAAGTCTGGCGGAGACAAAAACTTGCACACACTTTATGGTGCTGTGACAGGAGATAGCTTCTCGGGAGAGTCCGTGCTTGAGATCACTCTCAACTATGAACAAAAGAGCCGGCGGGCAGTGGAGGACTTCTGCGCCAGACTGAAGCAGTTGTTCTGCATAGGTCTCATCGCTTTGATGGGACACACAGCTCTGAAAGGTGGCGATGACGAAGAGGAGCTGCTCCGAAACTGGGCCGAGAAGATGAAGGTGGTCCAGTCAAAAATGAATGTGATCATTGAAGACTGCATCAATAGCTTCCCGAGTCAGGCTGAGATCGATATCAAGCGCCTGGTGAGGAACCACAAGGACAAAAGCAACCAGCAGCTGGCTGACATGATCATCGAGAACCTGAAAGGGAAGTACGACTGGGTGAGCTGGTCAGTTCGTGTCTTTAACTCGCCCAAGGGCTTGTTCACCAGCAAGAAGGACTTCCAGTGTGCCACAGGCAAGAGCAGGTTTCAGGTGCCTTCATCAGATGAGAATTTGAATGTTGTGGTATCCTATAGTGCCTCTCCTGAACCTCTAGACAAAGCTCAGCTCCAGCAGTTGGTGCAGGACCAGAAGAAAGTCACAGTTCCAGGGATTGCAGAGCTTGTCTTTGAGAAGACCCCTAAGTGTGTGGTCCATGCTGTCAAGACGTCATGCAAAGAAATGGCTTACTCATGGAGCTTTCAGGATGAGCTTCACTTCTTTGAAGAGTTCAAGAACTTTTACTTGTTTGTTCATTCTTCTTAAGCCACAGACCACAGTTAAGAAGAGCAAACATACGACAGATTTGTAGTAGAGTCAAAACATCTTTATCTACTATAAAAAAATACTGACTATTTTGATAAGCCACTAACCATGTTCTCTTTTAATGCTGAAGATTTTTGAATGCTGTGTGAGTTTTTCAATCTTTGTCAGTTATAAACACTGCATTTGCAGTTTTAAAAAGTGCCTTATGATTTGTATCTCAGTTATATCTTTGGGTAATTTTGTATGTCTTGGGTAAAAAAATTACTGATTAGCTTTATGAAGGCTATTAGGCCATCCTGAAATAAATCAGTATCAGGATCTAATGAAATTTAACAAATTCTCCTGGATGCAATAATGCTGttcattgtattttaaaattttgcaaAGACTTCTTCATGTCTTCTTCATTACAGCTGTTTGTCCCTGTGTGTATGCTATGGTGTGTTTACCCTCACAGACTTGGGTTCTTAAGGACACTATCAGACCTTGAATTGCTGCGTTAAAACCTGGACATGTAAGAACATgtcatgaaaggaaaaaaagttgtTTCCTTATGAACCCTTTCCAGCCTGTTGGACTGCTGAACtgtcacaggttttttttttttattgcatactGATTAAAATATGCCTCCAATTTTACTTAACTAATATACAAACCCAGAATTATACAGATTTTTTATGCTTTGTTCACCCTGGATTCAGATATATCAATAAGATGCTACATGTTGGTCTtgacatgatttaaaaatatcatgcaAAGGAGTGCACAATTCTCATCTGTACTCCAAACAACCATTCAGCTGCTATTCAGATATTTTACACTAATATATGATGGTCATGTGATTTTTAGttaaacacactgctgttacCAATCTGACTTTCTATTCTTACCAACCAGCTTAGGAaacatttctttccatttcacTACAAAATTACACAAGTATTATGTTTTCAGTTATACGGTCAATCAGTAATAACACTATAGCAGTAGGTATGCATTGTAATTTTTGCCtcctaaatatatatttttttgtattaaaggAGAAAGTAAACAGCATTTATATCAAATTTCATTTGAGACTGATTCTGGGTCAGTTAGTTATCTAAGTCAGATTCAGCAAGTGTGAGCAAGCAATCTGAGCTAGTTGAGCAGGTTATACACCTGAAATGCACCTTTGATTAATTACCAAAATGTCTACGCTTTTTACAAGACTTTCATACTGGTtctcttttgtttgttcttcCACTTATTATTTTGCAGTGGAGGTTTTTTCAGCTGTCCAACAACACCTTTGCTTACAGCTTATGGCTGATTGTAGCTCACAGTACCCCTTTATGAGGTTTAGCATTTTCAAACCTGTCATACCTTTTCATGATATAAACTTTACATTGTAAATGCAGAGAAATATACACAGTACAATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924294.2 True 3388 mRNA 0.38 3 2255046 2261887
XM_034297875.1 False 1638 mRNA 0.44 2 2252134 2255380
XM_034297876.1 False 1649 mRNA 0.45 3 2252123 2255380
XM_034297877.1 False 2756 mRNA 0.40 3 2252132 2261887

Neighbor

gene id symbol gene type direction distance location
LOC113533073 LOC108256177,LOC108433879,LOC105891878 coding upstream 11713 2237788 ~ 2240410 (+)
rpz LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC103372036,LOC106605297 coding upstream 19424 2220806 ~ 2232699 (+)
nr2f5 nr2f5,LOC108256176,LOC103038004,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC105891836,LOC107671473,LOC100380645 coding upstream 68687 2168718 ~ 2183436 (+)
sv2a sv2a,LOC107688240,LOC107592458 coding upstream 112125 2104788 ~ 2139998 (+)
mtmr11 mtmr11,LOC107726680,LOC107592143,LOC107671475 coding upstream 160642 2059540 ~ 2091481 (+)
LOC113532737 LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC106605297,LOC103372036 coding downstream 11748 2273635 ~ 2276398 (+)
LOC113532739 LOC108256190,LOC108256173 coding downstream 18062 2279949 ~ 2290955 (+)
LOC113532734 NA coding downstream 33431 2295318 ~ 2296990 (+)
LOC113532735 LOC108256190,LOC108256173 coding downstream 48158 2310045 ~ 2312370 (+)
LOC113532733 LOC108256181 coding downstream 51777 2313664 ~ 2316510 (+)
G325089 NA non-coding upstream 231735 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 240142 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 251119 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 319797 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 512868 1735619 ~ 1739255 (+)
G325247 NA non-coding downstream 72992 2334879 ~ 2335106 (+)
G325268 NA non-coding downstream 134786 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 138583 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 382154 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 809962 3071849 ~ 3072073 (+)
LOC113533074 LOC108256184 other upstream 36713 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 107598 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 332413 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1088509 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1241900 956584 ~ 1010223 (+)
G325435 NA other downstream 303813 2565700 ~ 2569739 (+)
hamp NA other downstream 1749493 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2129633 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2136772 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2659093 4920980 ~ 4923681 (+)

Expression


Co-expression Network