LOC113532737 (LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC106605297,LOC103372036)


Basic Information

Item Value
gene id LOC113532737
gene name LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC106605297,LOC103372036
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2273635 ~ 2276398 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924302.2
TCAGAAATTACCTTGGATGTAATTAAAGGGATAATAACTAAATTTTATTAGCAGTATTATCCAGGGACATGGGGAGGCcttttaaatgaatttctgtTGCCAAGTTGTATCTTTTGTCTCTTCTGCAAGATCTGCATCATGCTAgtcaaaaattacattttcatagcATAAAATATGCCAGTATCGACTCACATACTGATATGTTTCTTACCCCATCCTCCTCCCTAACCCACTGAGCACTGCTCTGATATGAGTCCCACCCTCACCCTGGCTTTAGGAAGAGGAAACCTATAGACACTAAAGCAGGCCAACGTTTCTGTTTTAGGCCATGGCTGACATTGAGATCTTAGAGGACAGAGACAAGCTGAAGCGAGGCCTGGTGAAGGTGCTGGAGTGCGTAGCCACCATCTCATCAGCAGCCGCTGTGGTGAATCCCATCTTCGGTGTGGCAGGCTCGCTGATCCGTGTCGTCCTCCACCATGTGGATGATGAGGAGATTCAAACTCTTCGACGTGAGTTTGGCAGTGTGAACCGGGCCTTGGATGAGCTTTCAGTGCAGAACCGTGGTGCGTTGCTCCAGATCAAGAAGGAGACATTGGACGGGCAATACAGCTGCGTAGAGGAGAACCTACGCAACCAGTTCCGTAAATTCATGGAGGTGGTGGAGGCACGGCCCGAGCACAAGGAGCGCAAGCGCAATGATTTTGAGGAAAGCTATGCCAACGACATGGGTGACCAGAACCTGCACACCCTCTATGACGGCGTAATGGGCAAGCCCAAGCTCTTCAGCAGGCCCATCCTCGAAGTCTACATGACTCACTCACAAGGAGATCGTAGAGTGATGGAGCGCCTGTGCACACGCCTCACCTACCTGTTCTGCGTCGGCCTCATCGCTCTGATGGGTTACGCTGCCATCAttggtgatgatgaggagggCCTGAGCGAGGAGTGGACCAAGAAGATGGAGAATGTGCAAGAGAGGATGCAGGAGGTGCTCGGGAAATGCAAGTGATTCCCCTGAATCACACAAGTTTGTTATGTTTGTTATGTTCTACATTATTTACTGTCACTACCCTTAATAAAAGGGGCAGCCATTTTTTGCATTCATATTCCAGGCcatgagttttttgttttttttgctattgACATGCCCCAACTTAGAAAGTCAGggctcaaagaaaaaaatgagttcCTGAGGGAAATTACGATATCTCTGACATGACTTAAAGGCAGCATATTTGGTAACTAGCATTAGTTACCATTCTTTCTGTTAACCCTTTAATCACACTGTTAGCATGACTACATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924302.2 True 1307 mRNA 0.47 2 2273635 2276398

Neighbor

gene id symbol gene type direction distance location
LOC113532732 LOC108256179,LOC108433877,LOC108433850,LOC108256180,LOC108433878,LOC103039774 coding upstream 11748 2252123 ~ 2261887 (+)
LOC113533073 LOC108256177,LOC108433879,LOC105891878 coding upstream 33225 2237788 ~ 2240410 (+)
rpz LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC103372036,LOC106605297 coding upstream 40936 2220806 ~ 2232699 (+)
nr2f5 nr2f5,LOC108256176,LOC103038004,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC105891836,LOC107671473,LOC100380645 coding upstream 90199 2168718 ~ 2183436 (+)
sv2a sv2a,LOC107688240,LOC107592458 coding upstream 133637 2104788 ~ 2139998 (+)
LOC113532739 LOC108256190,LOC108256173 coding downstream 3551 2279949 ~ 2290955 (+)
LOC113532734 NA coding downstream 18920 2295318 ~ 2296990 (+)
LOC113532735 LOC108256190,LOC108256173 coding downstream 33647 2310045 ~ 2312370 (+)
LOC113532733 LOC108256181 coding downstream 37266 2313664 ~ 2316510 (+)
LOC113532738 LOC108256190,LOC108256173 coding downstream 41920 2318318 ~ 2324066 (+)
G325089 NA non-coding upstream 253247 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 261654 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 272631 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 341309 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 534380 1735619 ~ 1739255 (+)
G325247 NA non-coding downstream 58481 2334879 ~ 2335106 (+)
G325268 NA non-coding downstream 120275 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 124072 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 367643 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 795451 3071849 ~ 3072073 (+)
LOC113533074 LOC108256184 other upstream 58225 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 129110 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 353925 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1110021 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1263412 956584 ~ 1010223 (+)
G325435 NA other downstream 289302 2565700 ~ 2569739 (+)
hamp NA other downstream 1734982 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2115122 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2122261 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2644582 4920980 ~ 4923681 (+)

Expression


Co-expression Network