LOC113532739 (LOC108256190,LOC108256173)


Basic Information

Item Value
gene id LOC113532739
gene name LOC108256190,LOC108256173
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2279949 ~ 2290955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924305.2
CCTGCATAAATAACACAGTGGTAAGGATGCTATCTCCAGCCTGAGGTCGATATAGTAGCTACCTGCAtcaaacacactgcagcaccaTTAAGAAGGGACCAGGAACAAAAGTTAGAGCAGaAACTAGTGACCCCTCTGCATCCATGGCAGACAAGGAGCAAATCAAAAAGACTGCAGTCATTGTGCTGGGTTGCTTGGAGAAAGTGTCCTCCTTCGCCTCCTCCTTCAACCCTCTGTTTGGCATCGTCACCTCACTGGTTGGTGTAGTGAGGAAAGGCCTGGTGGAAGATGAAGCCAACGAGCTGGACAAGGACTTCCAGCAGATTCATGATAAGTTGGAGAGCATCTCTGAGCAGAACAAGCAGCTGCTGGAACAGATCCACATTTCTGAGATCAACAAAAACTACGGTGACTTGGAAAAGAACATCGAGCACCAGTACAAGGCCTTCAAGACCATGGTGGACAGAGTCAGGAAGGACCCAGAAAACGGCGAGCGTTACAGAGAAGATTTCAAGAAAATCTATAGAAAACAACAGGGCCGCCTGAATTTGAATGTGTATTATCAAGCCATCATGGAAGAGCAGGGTCCTTTTGGGAGGCCACTACTGAGATGTTATCTAGAGCATTGCAAAAGGAACAGGAAGATCATGGAGGCTAGGTGCGCTCATCTGGTCTACCTTTTCCACATCGGCCTCATAGCACTGATGGCCTACTATGTAGTCactgaggatgatgaggatgagttcaGGGAAGAATGGGGCCAAAAGGTCATCGACATACAGACCAAGATGCAAGAAGTCCTGGATGAGTGTAGTGAGTAGGAGTGATACCAAATTCATTGAAGGGTTGTTAAACCACAGCTGTCTTAGTTTCTACTGATTTATAATGGAGACAATGATAAACAAAATCAACGCCATTTATTTTATGAGCAATGAGAACACTATTTTTTACTCTTCCTGTATCGTTTCTATGCCTTAGCACTTAAAATTCCAATCttttattcactttaaacagattATGCAACATCTTATATGACTGTATAAATCTGACTGTTGTTGACTGCTGTTGCTGTATGTTTTAAATCAACATATTTGTGTATTATGATCAGTGTGATTCATTTTGGCAGATTTTTAAATCATGGACCATACTgtttgattgtttaaa
>XM_026924306.2
AGAGAGCAGCACACAacaacaaggggaaaaaaacaaaacaataggAGACAGTATTCAACAATTTGAGaAACTAGTGACCCCTCTGCATCCATGGCAGACAAGGAGCAAATCAAAAAGACTGCAGTCATTGTGCTGGGTTGCTTGGAGAAAGTGTCCTCCTTCGCCTCCTCCTTCAACCCTCTGTTTGGCATCGTCACCTCACTGGTTGGTGTAGTGAGGAAAGGCCTGGTGGAAGATGAAGCCAACGAGCTGGACAAGGACTTCCAGCAGATTCATGATAAGTTGGAGAGCATCTCTGAGCAGAACAAGCAGCTGCTGGAACAGATCCACATTTCTGAGATCAACAAAAACTACGGTGACTTGGAAAAGAACATCGAGCACCAGTACAAGGCCTTCAAGACCATGGTGGACAGAGTCAGGAAGGACCCAGAAAACGGCGAGCGTTACAGAGAAGATTTCAAGAAAATCTATAGAAAACAACAGGGCCGCCTGAATTTGAATGTGTATTATCAAGCCATCATGGAAGAGCAGGGTCCTTTTGGGAGGCCACTACTGAGATGTTATCTAGAGCATTGCAAAAGGAACAGGAAGATCATGGAGGCTAGGTGCGCTCATCTGGTCTACCTTTTCCACATCGGCCTCATAGCACTGATGGCCTACTATGTAGTCactgaggatgatgaggatgagttcaGGGAAGAATGGGGCCAAAAGGTCATCGACATACAGACCAAGATGCAAGAAGTCCTGGATGAGTGTAGTGAGTAGGAGTGATACCAAATTCATTGAAGGGTTGTTAAACCACAGCTGTCTTAGTTTCTACTGATTTATAATGGAGACAATGATAAACAAAATCAACGCCATTTATTTTATGAGCAATGAGAACACTATTTTTTACTCTTCCTGTATCGTTTCTATGCCTTAGCACTTAAAATTCCAATCttttattcactttaaacagattATGCAACATCTTATATGACTGTATAAATCTGACTGTTGTTGACTGCTGTTGCTGTATGTTTTAAATCAACATATTTGTGTATTATGATCAGTGTGATTCATTTTGGCAGATTTTTAAATCATGGACCATACTgtttgattgtttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924305.2 True 1164 mRNA 0.43 2 2288662 2290955
XM_026924306.2 False 1111 mRNA 0.42 2 2279949 2290955

Neighbor

gene id symbol gene type direction distance location
LOC113532737 LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC106605297,LOC103372036 coding upstream 3551 2273635 ~ 2276398 (+)
LOC113532732 LOC108256179,LOC108433877,LOC108433850,LOC108256180,LOC108433878,LOC103039774 coding upstream 18062 2252123 ~ 2261887 (+)
LOC113533073 LOC108256177,LOC108433879,LOC105891878 coding upstream 39539 2237788 ~ 2240410 (+)
rpz LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC103372036,LOC106605297 coding upstream 47250 2220806 ~ 2232699 (+)
nr2f5 nr2f5,LOC108256176,LOC103038004,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC105891836,LOC107671473,LOC100380645 coding upstream 96513 2168718 ~ 2183436 (+)
LOC113532734 NA coding downstream 4363 2295318 ~ 2296990 (+)
LOC113532735 LOC108256190,LOC108256173 coding downstream 19090 2310045 ~ 2312370 (+)
LOC113532733 LOC108256181 coding downstream 22709 2313664 ~ 2316510 (+)
LOC113532738 LOC108256190,LOC108256173 coding downstream 27363 2318318 ~ 2324066 (+)
LOC113532585 LOC108256181 coding downstream 38293 2329248 ~ 2333724 (+)
G325089 NA non-coding upstream 259561 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 267968 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 278945 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 347623 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 540694 1735619 ~ 1739255 (+)
G325247 NA non-coding downstream 43924 2334879 ~ 2335106 (+)
G325268 NA non-coding downstream 105718 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 109515 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 353086 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 780894 3071849 ~ 3072073 (+)
LOC113533074 LOC108256184 other upstream 64539 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 135424 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 360239 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1116335 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1269726 956584 ~ 1010223 (+)
G325435 NA other downstream 274745 2565700 ~ 2569739 (+)
hamp NA other downstream 1720425 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2100565 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2107704 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2630025 4920980 ~ 4923681 (+)

Expression


Co-expression Network