dpys (dpys,LOC107686378)


Basic Information

Item Value
gene id dpys
gene name dpys,LOC107686378
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6066133 ~ 6084254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924312.2
ctCCGCCTTTCAGGACTTAGGTCAGGTTTCGCAACTGTAAACACTTGTGCAGATCGGCAAATCATAGGGGGAAAAAGACACTCTGAATTCTTTATATTTGGATTTACAACCcgaaaaattatttaattatagcaTAATAAGCATGTCGGAGAGGGGCCGGATTTTGATTAAAGGAGGTAAGGTAGTGAATGAGGAGTGCTCCGAGCTGGCTGATGTGTTTATAGAGGACGGGGTGATCCAGGCAGTGGGCTCCGAGCTGCAGGTGCCGGAGAGCGGAACTCGGGTGCTGGACGCCAGCGGGAAACTGTTGCTGCCCGGAGGAatagacacgcacacacacatggagctGGAGTTCATGGGCACTGTGGCGGTGGATGATTTCCGCTCGGGTACCAAGGCCGCAGTAGCCGGAGGAACCACCATGATCCTGGATTTTGTCATCACTCGAAAAGGAACCTCTCTGCTTGAGGCGTACGACAGATGGAGGAAGATTGCTGACGCAAAAGTGTGCTGTGACTATTCCCTCCACGTCGCTGTTACCTGGTGGGATGATAGTGTAAAACGAGAGATGGAGACCCTTGTTCGAGAGAGAGGAGTAAACTCCTTCAAGATGTTTATGGCGTATAAAGATGTGTTCATGCTGAGCGACCAGGAGCTCTACGCCGCTTTCTCTCACTGTAAAGACATTGGAGCCATCGCACAAGTCCACGCTGAGAACGGAGATCTGATTGCAGAGGAGGCCAAGAGAATGCTGTCTTTGGGAATCACAGGACCCGAGGGCCATGAGCTCTGTCGCCCTGAGGAGGTGGAATCAGAGGCCACTCAGCGTGCCATCACCATCGCTCACACTGTCAACTGCCCTCTGTATGTGGTGCATGTCATGAGCAAATCAGCTGCTAAAGTGGTGGCTACTGCTCGCAGAAACGGGCGAGTGGTGTTTGGCGAGCCCATAGCTGCTGGCCTGGGTACTGATGGCACTCATTACTGGCACAAGGACTGGGCACATGCGGCAAGATTCGTTATGGGACCCCCGCTAAGGCCGGACCCCAGCACACCTGGCTACCTCATGAACCTGCTCGCTAAtgaTGATCTGAGTGTAACCGGGACTGATCACTGCACCTTCTCCATGTGCCAAAAAGCCCTGGGCAAAGACGACTTCACTAAAATCCCCAACGGCGTTAACGGCGTGGAGGATCGCATGTCTGTCATCTGGGAGAAAGGAGTGCATAGTGGCAAAATGGATGAAAATCGATTTGTGGCGGTCACCAGTAGCAACGCAGCCAAAATCTTCAACCTTTATCCACAGAAAGGGAGGATTGCCAAAGGCTCTGATGCAGACCTGGTTATTTGGGACCCAAAAGCTACCAGGGTGATTTCAGCGAAGAACCACCACCAGGCGGTGGATTATAACATCTTCGAGGGGATGGAGTGCCACGGTGTTCCTCTGGTGACCATCTCCGGAGGCAGAGTGGTGTATGAAAATGGCCGTGTGTTGGCTGAGCCTGGGACAGGAAGGTTTATTCATCGAAAGCCCTACTCTGACTTTGTGTACAAGAGAATAAGACAAAGGGACGAGGTTGGGAAACCCAGTGCAGTGGCCAGGACACCCTATAAAGGAGAAGTCATATCTAAGGCAAACAGAGCTTGAAGGAAAACACTGCAGAAAACCTGCAGTGTTACCAAGTAACCTTGATCTCTTTTAGGATTTTAAAGGCGATAtaaagtactgtgcaaaagttgtAGATAAACGGTGATTGTGAAGCCTCCTTTAGAATTAcagatgctgtttttttttcagattgtgTATCAGGGTTGTCATGGAACAAATTTATTTAGCTGTTTATATTGCTTCagtgtgctgctagcaatgaactcctcTAAGATGGTATAATGACCAATGCTCTGCACGCTCTGGTCGACTCTATCAGTTCAAGCACCATAAGACGGCacttatcatatcatatcactTGTATATTCTGTTATCGGTACAAGTACGAGGAATTGAACATGGTGTTAAGATGGATACACACTATCAGGATCAGTATCGATACAGCAATGTTTAGAATGCACGACTGAAGCTGTGTACGTCATTTTCCCAAAGATATAGTGTGAGGAATCAAATCCTTTTTATATTTGTCTGCCTTCATCAGTCTATTTTCAGCAGATCCCTTACAGCActggctgaaacacacacacacacaagcacacacacaaacactatgaATCACCTCCATGATTCACAGAAACCTACAGACACGCATCACAGTGTTTACCAGCTCCTGAACAAAACATCTCAAAAATTGGACTCATCACTTATTAAGACTTTCTGCCACAGAGTGTTTCAGCGTGATTTATAGTCTCATACTTTGtctatatgtaaaaaaaaaaaaagtggttgcTTTGCTGCAACACAT

Function

symbol description
dpys Predicted to enable dihydropyrimidinase activity. Predicted to be involved in pyrimidine nucleobase catabolic process. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in dihydropyrimidinase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human DPYS (dihydropyrimidinase).

NR:

description
PREDICTED: dihydropyrimidinase

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K01464 DPYS, dht, hydA; dihydropyrimidinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924312.2 True 2414 mRNA 0.48 9 6066133 6084254

Neighbor

gene id symbol gene type direction distance location
si:dkey-122a22.2 LOC108256697 coding upstream 160716 5796162 ~ 5905417 (+)
sqlea sqle coding upstream 463120 5593849 ~ 5603013 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding upstream 474400 5584416 ~ 5591733 (+)
rnf144b LOC108256380,LOC108440759 coding upstream 483106 5565646 ~ 5583027 (+)
ccdc127a ccdc127 coding upstream 512829 5550225 ~ 5553304 (+)
zgc:101716 LOC108256737 coding downstream 220327 6304581 ~ 6312558 (+)
upk1a upk1a coding downstream 234833 6319087 ~ 6326360 (+)
LOC113532640 LOC108256717 coding downstream 570521 6654775 ~ 6759822 (+)
tbrg4 tbrg4 coding downstream 945527 7029781 ~ 7043670 (+)
nacad LOC108256401,LOC107579097 coding downstream 966398 7050652 ~ 7065149 (+)
G327391 NA non-coding upstream 223695 5842219 ~ 5842438 (+)
G327385 zfpm2 non-coding upstream 232871 5832993 ~ 5833262 (+)
G327178 NA non-coding upstream 459034 5605870 ~ 5607099 (+)
G327071 NA non-coding upstream 524244 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 1036343 5019782 ~ 5029790 (+)
G328024 NA non-coding downstream 564026 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 865305 6949559 ~ 6961376 (+)
G328208 LOC108256403,LOC108426361 non-coding downstream 938901 7023155 ~ 7029401 (+)
G328222 NA non-coding downstream 960792 7045046 ~ 7045278 (+)
G328260 NA non-coding downstream 1043912 7128166 ~ 7136722 (+)
G326997 NA other upstream 727882 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 751519 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 1076817 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 1135978 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 1142452 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1139768 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 1817261 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2288431 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2303933 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 2530819 8615073 ~ 8665836 (+)

Expression


Co-expression Network