nr4a3 (nr4a3)


Basic Information

Item Value
gene id nr4a3
gene name nr4a3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7279561 ~ 7310012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924343.2
CACATTGACGTAGCGCATACCAGGCTGCCTATGTAGAAGGCAGACGCGCATAAATGTGCTATTAGactttctctctcgctcagcGCGACACATAAACAAAGGCACATTGCAACTTCATCCCAGcgcgtctcttctctctctcttttccgtAGCCACTTCATGCCGAGCCGGTTACACTGGAGCTGAGCGGAGCTGAGCGGAGCACGGAGTACTTTTTATCCCTCTCTTAttttaaaagagaaattaaaaaagacatATATTACctacatatcttttttttttttttttgatgaaacCTGATCACCTTTTGCGACCATAAGATTTACTTCATTCATCtgaatttgaacattttttgcaaATTTCTGTTGGATATGCACAGGGAATTATTAGGGGTCTAAAAACATATGTAAAGACGGAACCGTCACAGCAAACAAcAGACCCCGGTTCGGAAGAGCGACTGCAGCCGAGCTCTGAGTCCCGGCTCCCGGATACGTGCATCGTCGCGCGAGCTGCTACAGCGCCGAACCCCCGCCGCGCGCCACCTCCGCCCTCCAAACCCAGCACGATTCAGCGAGCAAAAGGTCAACCAGATCGATGGCCTTGTGACAATGAGCAGGAGGTCACAGTCTTTGGAACAGCTCCGTTTTGTCCATCTAAAATGCTCTCCTCGAGACATGCCCTGTGTTCAGGCCCAGTATGGCCCCGCCCCCCCAGGGTCCAGCTACTCTGCCCAGTCCTTCGTCTATCCCGGCGAATACCACGGTAGCGAGCTGATGGCACCGGACTACGCTAAATGTGATCTGGGTGGAGGTGAGATCTCAGCGGCAGCAGCCACCACGTCACTGCCCAGTTTTAACGTGTTCGTCGAGGGCGGCTTCGAGCCCAAACCCTCGTGCTTGTACCAGATGTCTGCGCCACAACGGTCCACCATTAAGAAGGAAGAGGAGAGTTATGCATCAGTCGATGAAGCCATGGCCACTGGGTCCATGTATTTTAAGCAGTCTCCACCTTCGACTCCACCCACACCACTCCACCCAGGTCCTGCTAGCACCTCTTTCCTGTGGGAGGACCCTCATGGTCTACCTCTGGTGCCCCAGACATGCTCACGCTTCGCCCATTTCTATGATCAGACGGCACAGTCCGTGCCCACTTCCAGCAGTTACGAGGCGCCCATGGGCTTGCAGATCCGGCCCGAGCGCTCTCCTTCGTCTTCTTCCTCGCACCCGCCGCCCGGCCTGGAGCCGCACTCACATGCGCACTCGCACGTGTACCCACTGAGCGTGGGCAAACCAGGAGGCCTGGGCTTCCGTTCGCTGGGCATGGGTCCGTGCCCACAGTCACTCCTGGCAGAGAGCTTGCCGTCGCCACCTGGACGTGCCACCTCTGGGGAGGGCACGTGCGCCGTGTGTGGAGACAACGCCGCCTGCCAGCACTATGGTGTTCGCACCTGCGAAGGCTGCAAGGGATTCTTTAAAaGAACAGTACAGAAGAATGCAAAGTATGTTTGTTTGGCCAGTAAAAACTGCCCAGTGGACAAAAGGAGAAGAAACCGCTGTCAGTACTGCCGCTTCCAGAAATGTCTCAGTGTGGGCATGGTGAAGGAAGTGGTGCGCACAGATAACCTGAAGGGGCGGAGAGGTCGTTTGCCATCGAAGCCGAAGAGTCCGCTGCAGCCTGAGCCGTCTCCACCTTCACCCCCTCTCAGCCTGCTCAACGCTCTCGTCCGCGCCTATTCCCAGTCCATCCCCCGGGAGCTCGACTACAGCCAGTTCAGTGCAGTAGAGACAGGAACTTTAGCCGAGGCTCAGCAGATTCAGCTCTTCTATCGCGTCCTCACCAGCTCCATGGAGGTGACGCGTCGCTGGGCCGAGCGGCTCCCTGGCTTCACTGAGCTCCACCACGATGACCAGAGTCTCCTCATAGACTCAGCCTTCCTTGAGCTCTTCGTACTCCGCCTGGCCAACAGgtCGTTGTTGGCAGAGGAGAAGTTTGTTTTCTGCACAGGCCTGGTGCTCCACAGGCTGCAGTGTCTGCGAGGTTTCGGAGAATGGCTCGACTCAATCAGAGATTTCAGCTCTCATCTTCAGAGTCTCAGCCTGGACTTACCCGCGTTCTCGTGCCTGTCGGCCCTGGTGCTGctcacagAACAATGTCCTGGCCTCAAGGAGCCCAAGAAGGTGGAGGAGCTGCAGTCCAAGCTCATCTCCTGCCTTCGAGATCACCTGAGCTCCGGTGGGGCCACAAGTGTGGCTGCCGCAGgcaaagccccgcccccagtGGCTGCCGTTCTGGACCTGAAGATGGAGCTTCGGTCACAGCGCACTCAAGGCCTACAGAGGATCTTCTACTTAAAGCTGGAGGACCTGGTCCCACCTCCTCCACTCTTCGACAGATTCCTGGACACACTGCCCTACTAATACAGACACGCCCTAAAGCTCGCCTGGGCACGCCCACAGGTTGGGGACACACCACAGAGGACAGAGCCTGAAGAGAGACTCACTGAACTCGATTTTCTCTCAAGAGGCTCCAGATGTACACTCTTTCCACCTCAGCTCTGTGtctgataatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggaagaGAGGGAGCAGAGCTGTGCTTTTGGACtgtggttcagtgtgtgtgtaataaattgaGAGATAGAAGGTTGGAAGGGTTCTATTCAGTCAAAAGACAGTCAGTATGCTCtacatacacttacacacagttacacatgAGACACAAAGGACAtaaaaaatgagtgtgtgtgagagtgtatatgCGTCTCTGTGGAAAGCTTGAGGCAAAACGAATCAACAGACATCCAGACAAAGTGCATTAAATTCTAACCACCGAATCACACTCCCAAAACTGTATACAAGTGCAATTTACTaagtgctatttaaaaaaaaacaaaacaaaaaaacaaggatTAGACAGAAGAGTAGGAAAGAGTAGAAAgcgcaggagagtgtgtgtgttccatttCTATTTCAActctaaattattttaatactacGACTCACCCTGTGAAGTAATGATATCAAACCAAGCAGATGTCTCACACATCAGTCTGCTCACTAACTCTTGCAACTCTTGAGCAAGTTCTACAGACTTGAAATTACTGTAGAgttctattatttttttctggtttttgcAAACCAGGGAATTTTAGGGTTAGAAGTGTAGAGCTAAAAAAGAGTGCAAGGGAGCATTTGGGCTACAAgcacttaaaaaagaaagaaaggagagagggaTGGGGCACGGAAGGAGGGAATGATAGAGTGGGAAAGAGGGTGGGAGGGACGAAACATTCCGTGCTCACGCTCATTTTTATAAGTTTCTATTGTTAACACCATCTATTAATACAGAGGACTTTGTTGCAAAAAAAGTTGTcttttatttgtacaaaaaaaaaacagattatatgCATGGTTTTCTCTTTTCTCGCCTTTCTTgcctgtatttattttgtttgcgAAAGACGGCCAGCTCCTCAAAGGGCTCGGACACATTCACAGACTGGGCTTTTCCGCTAACATCGCCCAAAGGCAACCATTTGCGACAAATGgagaattatataaatatataaatatatatatatacacaatacaaaactaatattttgaagtgtttttatcCAATAGATTTTTCAAATCTTGTGGTACGAgttgtgcatttttttgtttgtttttgtttgttttgtttttttttcaaagaaaaaacaagattacaaaaaatgtctctttttgatttgtttggattactttttttttctctttggttcACTGGAGGCTCTGTTCAGCACTTTGAaatcataaagaaaaaaatgatta

Function

symbol description
nr4a3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Acts upstream of or within neutrophil homeostasis. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and spinal cord. Human ortholog(s) of this gene implicated in extraskeletal myxoid chondrosarcoma. Orthologous to human NR4A3 (nuclear receptor subfamily 4 group A member 3).

NR:

description
probable nuclear hormone receptor HR38 isoform X1

GO: NA

KEGG:

id description
K08559 NR4A3, NOR1; nuclear receptor subfamily 4 group A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924343.2 True 3864 mRNA 0.49 10 7279561 7310012

Neighbor

gene id symbol gene type direction distance location
stx17 stx17 coding downstream 10754 7248388 ~ 7268807 (-)
invs invs,LOC107596027,LOC107706121 coding downstream 55713 7185077 ~ 7223848 (-)
LOC113532705 LOC108256546,LOC100304805 coding downstream 124987 7141490 ~ 7154574 (-)
LOC113532854 LOC108256544,LOC100304805 coding downstream 142442 7124011 ~ 7137119 (-)
tmem67 tmem67 coding downstream 158592 7091541 ~ 7120969 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 143862 7453874 ~ 7568606 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding upstream 277181 7587193 ~ 7614945 (-)
lipeb lipe coding upstream 310689 7620701 ~ 7646843 (-)
cd79a NA coding upstream 339579 7649591 ~ 7656996 (-)
arhgef1b arhgef1 coding upstream 349166 7659178 ~ 7702791 (-)
G328215 tbrg4 non-coding downstream 246837 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 538515 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1194912 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1441284 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 1441779 5837489 ~ 5837782 (-)
G328439 NA non-coding upstream 66875 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 138161 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 140385 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 198857 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 248383 7558395 ~ 7558649 (-)
G328342 LOC108256401 other downstream 217133 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 895973 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1301182 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2302034 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2932308 4308606 ~ 4347253 (-)
sec61b sec61b,LOC102796100 other upstream 68719 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 2841485 10151497 ~ 10156800 (-)
G330185 NA other upstream 3212720 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3613114 10923126 ~ 10930775 (-)
G330379 NA other upstream 3772256 11082268 ~ 11083151 (-)

Expression


Co-expression Network