ptpn23a (ptpn23,ptpn23a)


Basic Information

Item Value
gene id ptpn23a
gene name ptpn23,ptpn23a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1296876 ~ 1310714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924349.2
aagCCCAAACAGCCTACACCTTTACGTCATGTCCGAAACATCAGCAGTTTCCTGGGACATGACACAGTCGTTTAGCTTAGAAAACACAGATTAATACAAGCAGATTACGCGTTATAGTAGAGCCAGACCGCGTTTAAATCGTTTTTTGCACTTCGGGGTCGCCGGCTGAGTGAATTTAGCTGGCTGAAAATGGAGGCGGTGCCGCGAATGCCGATGATTTGGCTGGATTTGAAGGAGGCTGGAGAGTTTCAGTTTAGCTCGACTGTTAAACAGTTCATACTGAAGAATTACGGCGAGGATCCAGACAACTACAACGAGCCGCTGAAGAAGCTGGAACAGTTACGacagAGTGCGGTGAACGTGACGCGGGACTTCGAGGGCTGCAGTACACTACGGAAATACTTCGGGCAGCTGCACTACCTGCAGAGCCGCGTGCCGCTGGGTCCCGGGCAGGAAGCCGCTGTCCCGGTGTCCTGGACGGAGATCTTCTCGGGGAAGACAGTCACGCACGACGACATTAGCTACGAGCAAGCATGCATCTTGTATAATTTAGGAGCGCTGCATTCGATGCTGGGAGCGATGGATAACCGCGTCTCAGAGGAGGGGATGAAGGTCTCGTGCACACATTTCCAGTGCTCAGCTGGAGCCTTCACCTACCTGCGAGATCACTTCAGCCATAACTACAGCGTGGACATGAGTCACCAGATCCTTAACCTCAACATCAATCTCATGCtgGGTCAGGCGCAGGAGTGTTTGCTGGAGAAGTCCATGCTGGACAACAGAAAGAGTTTCCTTGTTGCGCGGATAAGTGCTCAGGTAGTGGACTATTATAAAGAGGCTTGCCGTGCCCTGGAGAACTCCGACACGGCCTCAATGCTCGGAAAAATCCAGAAAGACTGGAAGAAACTTGTGCAGATGAAGATTTACTATTTCGCTGCTATTGCTCATCTGCATATGGGAAAGCAGGCTGAGGAGCAGCAGAAATATGGTGAAAGGCTTGCTTATCTTCAGAGTTCACTAGACAAACTGAACGAAGCGATAAAATTGGCTAAAGGCCAGCCGGACAGCGTTCAAGAAGCCTTGCGCTTCACCATGGACGTCATCGGGGGGAAatttaaCTCTGCAAAGAAAGACAATGACTTCATTTACCACGAAGCTGTGCCATCTCTGGAGACACTGCCTTCAGTTAAAGGTGCGCCGCTAGTCAAAGCCTTGCCTGTGAATCCAACAGACCCCAGTGTGACAGGACCAGATATTTTCTCCAAGCTGGTACCTATGGCTGCTCACGAGGCATCCTCTCTCTACAGTGAAGAAAAGGCCAAGCTGCTACGAGACATCATGGCAAAAATAGAGAGCAAGAACGAGACTTTAGAACAATTCATGGACTCTCTGAATCTGGACCCAGACTCTGTGGACAACATGGACATGTACAACAGCATTCCCTCTGTACTCATGGAGAAGTGTGCGGCTCTGAGCGTGAGACCGGACACAGTAAAGAGTCTCATACAGTCCATGCAGGTATTATCGGGCGTGTTCACGGATGTGGAGGCCTCCCTGAGGGAGATTCGGTCAGTCTTAGACGACGATGAAGCAGGTGACCGGAAGCTGGAGGAGGTAGCAGGGAAGCAGAGTGTCCCAGCACAACCTGCCGCCATAGCTGAGCTCCGTAGGGACCTCGAGAAATACCTGGAGGCCCACGAGAAAGCAAGCTTCACCAACACAGAGCTTCACCGGGCCATGAATCTGCACATTAGCAACCTGCGACTGCTGGGTGGACCACTGGACACTCTGAGAGAGGCCCTGCCCAGACCACAGCTTTCTGAAGATGAAGTAGCAGGCCTCCAGTGCATGAAAAGGATTCTGGGTAAAGTACAGGAGATGAAAGACCAACGCAGTTCTCTTGAGAAGCAGCTGAGGGAACTGATCCAGCAGGATGACATCACTGCTGCTTTAGTTACCACTGAGAGAGCTGATATGAAGAGGTTATTTGAGGAGCAGCTGAAGAAGTACGAACAGGTAAAGGTGTATATCGATCAAAATCTTGCTGCTCAAGAGAACATCCTTAAGGCACTGACAGATGCAAATGTCCAGTATGCAACAGTACGCAAGAGCCTGGCCGAGACGGAACATAAATGGAACAGTACAGTGCAAATGCTTGTTGCTTCCTATGAAGCCTATGAAGACCTGATGAAGAAATCTCAGGAGGGAAAAGAGTTTTATGAAGACTTGGACGCTAAGGCTTCTCGCCTCTTAGAAAGGGCTAAGACCATCTGCAAGACCAGGGATGAAGAGAGACAAGCCATTTTGGAAAAAGAGCTCCAAAAGAAGGTTCCTCAAAGAcccacagccccaaagccagCCCAAAAGAAAGCCCCAGATATGGATTCCTCTGGCATAGAGGACCCTGAAATAGCCAAGTTGAATGCTGCCATTTTAGCCTTAGGTGGAGACTTACCAGAAGATCTTCGTAGTTTGCCTCCTGAGCTTGCCCTTCCCATGATACCAGAGGGTTTTCATCCAGGGGCAGCTGCTCTTTATTTACCACCCCGATTTCCTCCGAACCTACCACCTCCTGAACTTCTTGCGCAAATCTCCCGTTTTACAACACTTCCCCCCACCCAGCGCTTCAACCACAATCTGCCACCAGGCCCCCTGCCCCAGCAACATCAGGTTCCTCAGATGCCCAACCCTCAAGTCGCTCGGCTTCCTTCGCTGCCTGGGTATCGTCCTCCATCTTTACAAACCCAGCCAGCTGTATTGGGCCCACCAGCTCCCATTCGCACATCCACCACCACTGTGGACAGTGTGCAAACGCCTATTCCCAGCTACACTCCAGCACCAGGACAGCCAGCTATGCCTGCACCAACCCCTGGACACCCTATGTCCACTCCTGCTGTATATAATCCTCCCCTTCCAGTGGCTAGTCAGCCTCAGTATTTGCAGCAGCCTGGTGTTCCTGTTAACCAGCCACCTCAGGGACTACAAGCTTCTCAACCACAGTCACAGCCCCGTCAACCATTTCCCCAAGTTCACAGTCAGGGCCAACCACAGCCATTTTTCCAGAAGATGCCAACTCAGCAGCAGATACCTGCACCTGTAACTGGGCCTCAGCTCCCACAACAAACTCAGCCCCACTACCTACACCACATGGCGCAACAGAGACCACATGGACCACCTAATCTTCAGCAACGGCCATTTAATATTCACACTACACCATCTGCACTGCCCCAGCCCCAGCAGGTGTACCCTCCTGTTTCATTTGTTCCTGGTTGCCAACCTGTGAATGCCATTGCTCCAAATCAGCTGCCCCATCATTCCATGCCACCACAGATGCCCCCAGCCTCCCAGCCAATGCCTCAAGTTTCTATGCCACATTTACCAAATGTAAAACAACAAATGCCCCCTTGTTCCCAGCCCTATATGCCCACAGTCAGTCAGCAAGTACATCCTATTCCCCCTCCACAAACGCCCCTTTCCTCACAGCAGGTACCACCCGCAAGCCATGGGCAAATGCCTCCCACTGTACAACAGATACCTCCACATTCTCAGCCACAAATGCCACCATCTTCCTCCCAAATGTCTCCACCCACTCACCTGCAAATGCCTGCAGCTTCCCAACCAGTCTTGCATCCCTCTTGTCCACCAGTATCTGCTGTCTCCCAGTCTTTACCCCACCCATCTCGTCCACCAGTGCCCAGTGTTTCACAACCATTACCACACCCCTCCCATCAACAAATTCATCCTCCCTACCAGCCAGCATTTCCAGCAACCACACCAAGGGTTCCAGTCCCTGTCCAGCCTCAGTTACCTCCAGCCTCTCTGTCAGCACAGTTCCCAGTGCACACCAATGCTCTCCCTTCACAGCCCCATGGCAGTCTTTCCTCACAACTCCCTCCTGGACCTCGTCCTTCAGTGCCCCCACAGATGACCCAGCAACCTATGACCTTGCCTCAGCACCATCTCCCTCCTCACTCTACACCTGTGGGTTATCCTGGTGGTATTCCTATAGTTCCCCACCAGTCCACAGTTCCTCAGCAGCCCCAGGCTCTGCCTCAACAGGTACCATCAGGGGCGCCAGCGTCTTACCCTGGGCCACATGCTGGGATCATTCCTCCTGGACCAATCCAGCATTCCGGACCAGTAGTTACACCTGGACTCCAGCCACTCCCTCAGGGTATGATCCCACCATCTTCAGCTGCACCTGGTGCTACACCAAGTAGTGTCCTGTCTGCCCCATCTCCTTCTCCATCACCAGGGCCTTCCTCACTAAGTATCGTGCCTCAGAGGCCCTCTCCTGCTCTCACACCAGTTGCAGGTGCAGCGATACCACCGACTGCAACAACACCCCTGCCCTCATCTCCCCTGCCATCGTCCAACTCACTGTTTCAGCACCAGAATTCCAGTACAGATGATCTTCTCTCTTCAAGCCCTGAGAGCCAACATGGTGGTAGCAAAGACACTGCCAATGTCTTATTACCCACCAAGGCCGATCCTCAAGATGAACAGCTTCGCAAGAAATCAGAGGGAGTGAAGATTATTCAAGGTGATCCATACCAGGCTCCAGAGAGGGTCTCACAGCTTTGTGCAGAACTCGAAAGGTTTCGGTCAACTGTCCAGTCTTTGGAGCGTCCGTCAGGAGAGGGAGGTTTATCAGAACTTGATGCTCGATGGAAGGAGCTGCAAGATCAGCAAGAGAAGGATTCTCGTCAGCTCTCTATCGCCATAGCCCGATGCTACACCATGAAAAACCGCCACCAGGATGTCATGCCTTACGACTGTAATCGAGTTGTTCTGCACTCTGGCAAAGATGACTATATCAATGCCAGCTTTATAGAGGATCTTTCACCATATTGTCCCCGTCTTATTGCAACACAGGCTCCCCTTACTGGAACTGCTGCTGATTTCTGGCTCATGGTCTACGAGCAGAAAGTGTCTCTAATTGTAATGCTGGTGTCTGAGCAAGAACTTGAAAAGCAAAAAGTCTTGCGCTACTTTCCATCTGAAAGAGGACAGCAGATTACTCAAGGCTCCATCACGCTCAGCCTGACTACCCAGAAAAACACCGCCACTCACATAGAGCGCATGATTGGACTGCAGTATCGAGATCAGAGTCTGAAGCGCACCGTCATCCACCTACAGTTCACTTCATGGCCTGAACTCGGCTTGCCAGAGAGTAAAAGTAACCTCATTCGATTCATTCAGGAAGTTCACGGACATTACCTTCTCCAGCGCCCTTTACACACACCTGTCGTGGTGCACTGCAGCTCTGGTGTTGGCCGAACCGGAGCCTTCTGCCTGTTGTATGCTGCACTACAAGAGCTGGAGGCTGGGAATGGTATACCTGACCTATCCCAGCTGGTTAGGAAGATGAGACAACAGAGGAAGAACATGCTACAGGAGAAGTTACACTTAAAATTCTGCTATGAGGCAGTCCTGAAACATGCAGAGCAGGTGCTTCAGCGTCGTGGCATCATTACCACCCCAAGCCAAAAGTCCACAAACAGCGCAGCAGTTAAGCAGTACTCACAGCCAGAGGCTCAGGATATCGTTCTTGGAGGTGATATGCCCATTAGCTCCATCCAGGCTACGGTTGCTAGGCTAAGCATCCGCCCACCCAGTGCTGAGTCTGACCAGGACCCAAATCAGGACCCAATGCTTTCTGTTGCTGCAGGACTAGAACCGGAGTTTTCACTAGTCCAAGACCTCCAGGCTACTTCTCCCACTGACACAGTTCCTGCCTCACTGAGTCCCCCAATTTCCTCCCCTGCTTCTCCAGGTAAGATGCAGTCCCCTTCACCTCCTAACCACCAGGGTAACGGGTTCAAGGGATCCACACCCATGCCAGTCTCCAACAACCATGCTGCACCTGAAGCAGCTCCCCCAGCACCGTCATCCCTGGACCTTTTGGCTTCGCTAACACCTGAAGCTTTTACACTCGACAGTGGTTGCCGTGGCAAACAGCGAATCAGCAAGCAAAGTTTCTTCCAGGCGCAGGATGGCCAGGGTCTGCAGGGTCCTCCGAATGGAGATGACCCACTCAGCACCCTGGATCCCCTCTGGACTCTCAACAAGTCCTGACTTCCTGGAATTCCTTCTGATGAGGCCACATCTTTTTATGCCTCAGTGTTCTGTATTACCAGATCACTCTACCATTTAGCATTTTCGCTGCTTATCAGCTAGCTAACAGCCTTTATTAGTTGAATCCGTTATTTTGGAGCAGGGAAATGCCCAGATACCTGAATCCTTGTCCATGGCCTGTAACTCTGGGACCACCTCACTGTGGGTCAGTCCCTGTGTATCTCTTTAAGTCTGCACTTTTCTGGTACTGCCCTCCTTAAAGCTGTTTCCCAGCATGCGCACCTCATCTGAAGATGAGCCGGGCATTCTAAATGGACATCTGCATCTCAACACCAAATATGTCTTTATTAACAATGGAGATAAAAGACATGGAAATCAAAAGGTGAACTCAGTGAGCACTTTAATTTGAGAGAAGGGAACAACAGATTTGTCGGAGTGGTGGTTTGCTTAAATcttaaactggaaaaaaactGGATTTGAAAGAGGAACCCCAGTTCACTTTGTAATTCTGAGCAGTTTAAGTCTTCAAAGTGTGTTGACAAACGGTTACCACTTCTTTTGCACAGATTTCCCTCGTTTCACTTTGCTCCTTGCATCGTGGCCTATTTGTTGTCAGCTATGATCAAGttggaaaatggaaagaatCTGATAAAAAGTGCTCACTTTATATTAGCATACAACTGAAAAAGCCAGTGAGGACCAGTTCACAGAATCACATTTAAGTAATGCTAGCTGCCTTCTACTAACATTATAAGTTAACGTCTATCGTTAGCTATTTTTGGGGGAGTATTTGCTAACTTTATGTATGGCTAAGTGATGCTGGTATGCTGTGTACTCAATTTccttataacacattataacctTACAACGTATTTCTGATTCAGCACACCATAACTTTACATTCTGAGTTGATTCTTTCTGCCTTGttaaatgttgtaaatatatcttaattaaagactgatctctTCAAATCAT

Function

symbol description
ptpn23a Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Orthologous to human PTPN23 (protein tyrosine phosphatase non-receptor type 23).
ptpn23 Enables protein kinase binding activity and protein tyrosine phosphatase activity. Involved in several processes, including early endosome to late endosome transport; positive regulation of adherens junction organization; and positive regulation of transport. Located in ciliary basal body; early endosome; and nuclear body.

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 23 isoform X1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18040 PTPN23; tyrosine-protein phosphatase non-receptor type 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924349.2 True 7053 mRNA 0.50 26 1296876 1310714

Neighbor

gene id symbol gene type direction distance location
LOC113541446 LOC108256266 coding upstream 109515 1185520 ~ 1187361 (+)
LOC117595784 LOC108256266,LOC108256164 coding upstream 129918 1138279 ~ 1166958 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding upstream 172695 1103739 ~ 1124181 (+)
cmtm6 NA coding upstream 341483 934154 ~ 955393 (+)
cmtm7 cmtm7,cklf7,LOC106606093 coding upstream 366011 923165 ~ 930865 (+)
si:ch211-269k10.4 NA coding downstream 171185 1481899 ~ 1484529 (+)
LOC113532957 LOC108256297 coding downstream 397718 1708432 ~ 1713392 (+)
dnase2 LOC108256294 coding downstream 413417 1724131 ~ 1734131 (+)
phf1 phf1,LOC108256128,LOC108433894,LOC107592148,LOC107592451,LOC107665654,LOC107726675 coding downstream 460114 1770828 ~ 1788284 (+)
syngap1b LOC108256109,LOC108433893,LOC107592452,LOC107726670,LOC101464846,LOC102194363,LOC103477581 coding downstream 485641 1796355 ~ 1898390 (+)
G324216 NA non-coding upstream 543433 749451 ~ 753443 (+)
G324197 NA non-coding upstream 583075 713395 ~ 713801 (+)
G324160 NA non-coding upstream 689333 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 697706 598410 ~ 599170 (+)
G324125 NA non-coding upstream 707967 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 197 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 18933 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 28814 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 30411 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 67832 1378546 ~ 1378940 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 133262 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 286653 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 490348 774289 ~ 806528 (+)
G324206 NA other upstream 548401 745673 ~ 748475 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 686867 607612 ~ 610009 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 588912 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 831478 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 894132 2204846 ~ 2215410 (+)
G325435 NA other downstream 1254986 2565700 ~ 2569739 (+)
hamp NA other downstream 2700666 4011380 ~ 4013538 (+)

Expression


Co-expression Network