rab5ab (rab5a,LOC103038585,LOC108249324)


Basic Information

Item Value
gene id rab5ab
gene name rab5a,LOC103038585,LOC108249324
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3714016 ~ 3722769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924356.2
cgcaaaaaaaaaaaaaacgaggaaGGAATTTAACTCTTGTTTTTTTGCTTCTCGGTTTTCTCTTTAACTTGATCGTGAAGCGCGACTGAAACACGCTTCTGCTCCTTTTTTGTTAATTCGGAAAGCAGAGTTACACAGATCCAACTCAAGTCCATAACAGGTGACTGGTGACTGGGTCATGGCAGGAAGAGGCGGTGCTACAAGACCTAACGGGCCGAACGCAGCCAGCAACAAAATCTGTCAGTTCAAACTGGTGCTTTTGGGCGAGTCTGCAGTCGGCAAGTCCAGCCTGGTGCTGCGCTTCGTCAAAGGCCAGTTCCATGAGTTTCAGGAGAGCACGATAGGAGCGGCCTTCCTGACTCAGACGGTATGTTTGGATGACACGACAGTGAAGTTTGAGATCTGGGACACAGCCGGTCAAGAGCGCTACCACAGTTTGGCTCCGATGTATTACAGAGGAGCGCAGGCAGCCATAGTGGTGTATGACATCACAAATGAAGAATCATTTGCACGTGCAAAGAATTGGGTTAAAGAGCTTCAGAGGCAAGCCAGTCCTAATATTGTAATAGCTCTGGCAGGAAACAAAGCAGATCTTGCCAACAAGAGAGCACTGGACTTTCAGGATGCACAGTCTTATGCAGATGACAACAGTTTGCTTTTCATGGAAACTTCAGCAAAGACGTCAATGAACGTGAACGAGATTTTTATGGCTATTGCAAAGAAACTCCCCAAGAGTGAGCCACAGGCAGCCGGAACAAGTGCAGGCCGAAATCGAGGAGTGGACCTGGCAGAGACAGCGCAGCCTGCCAAGGGGCCATGCTGCAGCAACTAACCACCAAACGCACACATTCTCACCTCCCAACTAACTCTGCATCACTTCTGGACATGGGGCGCATCCTTCCAAACCTCGCTCCCTGGAACTGCTAAAGACTCTGTATAGCTCTGTTTCTAatacctttttgttttgttttttttcctttggttttttttttattttttaagcagGTATAAGTACTTAGGTATAATGGATGCATGTATCACTACAAAGcctaaatacacatttttaactTAACATGGGGTAAAGATAACTAGGTCGAATGAGAGAGGAAGAACTAGAGCTTGGGTGcgcgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcatgtgtgtgtgttgtatagtgtagtattaaGGATGTGGAGGCACAGTAACATGTCCTGACCGGGTTTGGTGGCTGTTGGATGCTGGTATTTGCAGCTAAGTCAAGCTGTACATGCAGCtttcagtgtgtttgagtgcCATAGTAGAGAGATGAAGAAATCCATCATCTGTGGAGGTCTGACCAAGAACAACCCGATCCGAAACAAAGATGCTACCTAAATGATCACCGTTATATGTGTAAATGATGTAGAGAGAAGCCGATTTTGCATGATTTGACTGTTAATCTGGTAAAATAATTcccatgttaaaaaataatcactcaTTAACTAGTAAAGCATCCAGGATTTTTGGAATCTTCTACTTGTAATATTGGCCATTTTGGTGTTGAAGTGCAGTTCCTTAATGGGAAGTAACTTTTCCCATCCATCTTGCTGACTTTCAGTTGAATTTCAGCTCAGATATCATTTGCTTAAAAGAATCCAATGGATGCAAAATGAGGGCTAAATCAAACCTCTGCTTATCCAAGCTATTTGTTGTGTAGCTATTAGAGAACGATCATCATTCTACCTACACATTCCTCCTTGAGTCTAAGAATACactctctccttgtctcttcTTGGAGATTATTAAAGTATTGGTGGCTGACGGCCTGAATCTGTTACTGTCCTGGATGGACAGCCTATTCTGATAGTCAGACCTGATTTGACCAACGGCTGTGTCTTCTGAGGGAAATGAATAAACGGAGGGTGGCGATTACGTTCTATCCTAGTGTATGGGCAACTGTTGATAGTTATGTGTTGGCGTTACATACGTTAACACTAAAGAACAGTAGATTTAAAATCTTCCATTCCCTCTTTTGAGCTACAGTCTCTTTCATAAATGTCACAAATAATTCTTCATAGTGCATGGCTGATGCATTATTGTGATGCAGTGTAGTACAGCTACGAAAACTAAAGCTTTGAGGACTCTTTATTGATTCATCTTTGGAATATATTCCGGTCATTGAAGGCGTTACTGCCCAGTGGTAGAAAATTTTCAACGTGTCAAGGTAGAAACCCAGTATATCTTGCTGTCTCCATCTTAAATACTACTATATGAACTGTTTGCCATGATGGACCGTATGTATGCACTCTTCTTTTTTGTACAGTTCCCTTTAAATAAGAGATTTCTTTTCACAAATTGGCCAAATAATGTTTTGAtggttgtctttttttcccttgtatGTAGTGTTATTAACAAATCAACTTGACATTTAACTCATGGTCTGTCTAGTGCTTCTTTTGAGatgctaaatgtttttttttctattgagATACTATCAAGTTGCACAAAATATgagttgtatttttaaataagtcaTTATGAGACGATGCCTGCCTGGTGTCTCTGCAGTGTGATCAAGCTGAAATGGACCACAGTGGGCTTGATTAGTGCTGCTAAATTGCCGCAGGTAGCTGAGGTAATTAATTAGCAGCCATCCGAGAGCCGAAAAGGATTGAGTGATGTAACAGCATTAACACTGAGGGactgattgttttttaaatgtccagGTACTAGTTAATATTTCCAATAAAGGGGGTGAATTGTATACAGTT
>XM_026924357.2
cgcaaaaaaaaaaaaaacgaggaaGGAATTTAACTCTTGTTTTTTTGCTTCTCGGTTTTCTCTTTAACTTGATCGTGAAGCGCGACTGAAACACGCTTCTGCTCCTTTTTTGTTAATTCGGAAAGCAGGTACTTCATGCGAGTTACACAGATCCAACTCAAGTCCATAACAGGTGACTGGTGACTGGGTCATGGCAGGAAGAGGCGGTGCTACAAGACCTAACGGGCCGAACGCAGCCAGCAACAAAATCTGTCAGTTCAAACTGGTGCTTTTGGGCGAGTCTGCAGTCGGCAAGTCCAGCCTGGTGCTGCGCTTCGTCAAAGGCCAGTTCCATGAGTTTCAGGAGAGCACGATAGGAGCGGCCTTCCTGACTCAGACGGTATGTTTGGATGACACGACAGTGAAGTTTGAGATCTGGGACACAGCCGGTCAAGAGCGCTACCACAGTTTGGCTCCGATGTATTACAGAGGAGCGCAGGCAGCCATAGTGGTGTATGACATCACAAATGAAGAATCATTTGCACGTGCAAAGAATTGGGTTAAAGAGCTTCAGAGGCAAGCCAGTCCTAATATTGTAATAGCTCTGGCAGGAAACAAAGCAGATCTTGCCAACAAGAGAGCACTGGACTTTCAGGATGCACAGTCTTATGCAGATGACAACAGTTTGCTTTTCATGGAAACTTCAGCAAAGACGTCAATGAACGTGAACGAGATTTTTATGGCTATTGCAAAGAAACTCCCCAAGAGTGAGCCACAGGCAGCCGGAACAAGTGCAGGCCGAAATCGAGGAGTGGACCTGGCAGAGACAGCGCAGCCTGCCAAGGGGCCATGCTGCAGCAACTAACCACCAAACGCACACATTCTCACCTCCCAACTAACTCTGCATCACTTCTGGACATGGGGCGCATCCTTCCAAACCTCGCTCCCTGGAACTGCTAAAGACTCTGTATAGCTCTGTTTCTAatacctttttgttttgttttttttcctttggttttttttttattttttaagcagGTATAAGTACTTAGGTATAATGGATGCATGTATCACTACAAAGcctaaatacacatttttaactTAACATGGGGTAAAGATAACTAGGTCGAATGAGAGAGGAAGAACTAGAGCTTGGGTGcgcgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcatgtgtgtgtgttgtatagtgtagtattaaGGATGTGGAGGCACAGTAACATGTCCTGACCGGGTTTGGTGGCTGTTGGATGCTGGTATTTGCAGCTAAGTCAAGCTGTACATGCAGCtttcagtgtgtttgagtgcCATAGTAGAGAGATGAAGAAATCCATCATCTGTGGAGGTCTGACCAAGAACAACCCGATCCGAAACAAAGATGCTACCTAAATGATCACCGTTATATGTGTAAATGATGTAGAGAGAAGCCGATTTTGCATGATTTGACTGTTAATCTGGTAAAATAATTcccatgttaaaaaataatcactcaTTAACTAGTAAAGCATCCAGGATTTTTGGAATCTTCTACTTGTAATATTGGCCATTTTGGTGTTGAAGTGCAGTTCCTTAATGGGAAGTAACTTTTCCCATCCATCTTGCTGACTTTCAGTTGAATTTCAGCTCAGATATCATTTGCTTAAAAGAATCCAATGGATGCAAAATGAGGGCTAAATCAAACCTCTGCTTATCCAAGCTATTTGTTGTGTAGCTATTAGAGAACGATCATCATTCTACCTACACATTCCTCCTTGAGTCTAAGAATACactctctccttgtctcttcTTGGAGATTATTAAAGTATTGGTGGCTGACGGCCTGAATCTGTTACTGTCCTGGATGGACAGCCTATTCTGATAGTCAGACCTGATTTGACCAACGGCTGTGTCTTCTGAGGGAAATGAATAAACGGAGGGTGGCGATTACGTTCTATCCTAGTGTATGGGCAACTGTTGATAGTTATGTGTTGGCGTTACATACGTTAACACTAAAGAACAGTAGATTTAAAATCTTCCATTCCCTCTTTTGAGCTACAGTCTCTTTCATAAATGTCACAAATAATTCTTCATAGTGCATGGCTGATGCATTATTGTGATGCAGTGTAGTACAGCTACGAAAACTAAAGCTTTGAGGACTCTTTATTGATTCATCTTTGGAATATATTCCGGTCATTGAAGGCGTTACTGCCCAGTGGTAGAAAATTTTCAACGTGTCAAGGTAGAAACCCAGTATATCTTGCTGTCTCCATCTTAAATACTACTATATGAACTGTTTGCCATGATGGACCGTATGTATGCACTCTTCTTTTTTGTACAGTTCCCTTTAAATAAGAGATTTCTTTTCACAAATTGGCCAAATAATGTTTTGAtggttgtctttttttcccttgtatGTAGTGTTATTAACAAATCAACTTGACATTTAACTCATGGTCTGTCTAGTGCTTCTTTTGAGatgctaaatgtttttttttctattgagATACTATCAAGTTGCACAAAATATgagttgtatttttaaataagtcaTTATGAGACGATGCCTGCCTGGTGTCTCTGCAGTGTGATCAAGCTGAAATGGACCACAGTGGGCTTGATTAGTGCTGCTAAATTGCCGCAGGTAGCTGAGGTAATTAATTAGCAGCCATCCGAGAGCCGAAAAGGATTGAGTGATGTAACAGCATTAACACTGAGGGactgattgttttttaaatgtccagGTACTAGTTAATATTTCCAATAAAGGGGGTGAATTGTATACAGTT

Function

symbol description
rab5a Enables GDP binding activity; GTP binding activity; and GTPase activity. Involved in several processes, including amyloid-beta clearance by transcytosis; early endosome to late endosome transport; and regulation of exocytosis. Located in several cellular components, including cytoplasmic side of early endosome membrane; nucleoplasm; and terminal bouton.

NR:

description
PREDICTED: ras-related protein Rab-5A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924356.2 False 2797 mRNA 0.42 6 3714016 3722769
XM_026924357.2 True 2809 mRNA 0.42 6 3714016 3722769

Neighbor

gene id symbol gene type direction distance location
LOC113532711 plcl2,LOC107688208,LOC107671457,LOC107592112,LOC100334276,LOC100701990,LOC102309498,LOC101482776 coding upstream 243804 3425575 ~ 3470212 (+)
LOC113532798 LOC108256747 coding upstream 291022 3365121 ~ 3422994 (+)
LOC113532606 LOC108256085 coding upstream 403198 3305106 ~ 3310818 (+)
LOC113532608 NA coding upstream 409972 3301555 ~ 3304044 (+)
brd2b LOC108256339,LOC103041900,LOC107592490 coding upstream 418984 3279997 ~ 3295032 (+)
ube2e2 ube2e2,LOC108256709,LOC100705137,LOC105021876,LOC106582102,LOC106605266,LOC103388353 coding downstream 126293 3849062 ~ 3878524 (+)
nr1d2a nr1d2,LOC108256654,LOC105891902,LOC107743928,LOC107565234,LOC107700655 coding downstream 159202 3881971 ~ 3891903 (+)
LOC113532591 NA coding downstream 194646 3917415 ~ 3935176 (+)
LOC113532598 LOC108256467 coding downstream 212793 3935562 ~ 3940027 (+)
LOC113532597 LOC108256466 coding downstream 217616 3940385 ~ 3945230 (+)
G326023 NA non-coding upstream 11863 3701334 ~ 3702153 (+)
G325815 NA non-coding upstream 391686 3319917 ~ 3322330 (+)
G325754 LOC108256342 non-coding upstream 453835 3258929 ~ 3260181 (+)
G325730 NA non-coding upstream 505054 3139312 ~ 3208962 (+)
G325697 NA non-coding upstream 641943 3071849 ~ 3072073 (+)
G326131 NA non-coding downstream 157908 3880677 ~ 3880941 (+)
G326178 NA non-coding downstream 222613 3945382 ~ 3946133 (+)
G326193 NA non-coding downstream 244763 3967532 ~ 3973002 (+)
G326288 NA non-coding downstream 596446 4319215 ~ 4359118 (+)
G326281 NA non-coding downstream 626012 4348781 ~ 4351847 (+)
G325435 NA other upstream 1144277 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 1498606 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 1569491 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 1794306 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 2550402 1118268 ~ 1163614 (+)
hamp NA other downstream 288611 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 668751 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 675890 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 1198211 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 1202012 4924781 ~ 4930155 (+)

Expression


Co-expression Network