LOC113532775 (LOC108256159)


Basic Information

Item Value
gene id LOC113532775
gene name LOC108256159
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5254686 ~ 5258559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924393.2
GACCGAAACAAGTCAGCTGTCCAAGGGGCACCCAGCATAGCCTTGATTTCCAGACTAGCATATAATAAGAACAAATACGCAATACGCAACAAATACGCAAATGGATTCTCAGCTTCCTTTCTCTGCTGAGGAATTATCCTGTCCCATGTGCCACGACGTCTTCAAGGATCCAGTTCTCCTGTCATGTAGTCACAGTATCTGCAAAGTCTGTTTCGATCAGTACTGGAAGTGTATGGGGTCTCTGGAATGTCCTGTTTGCAGAGAGCAAACCGATGTGGCTTCTCCATGTGATTATGTATCGAGAGATTTGTGTGAGGTTGTGCTACAGCGAAGGAGGAATGAGAAAGTTTCAGCATGTTCTACATCACTCTGCGGTCTACACGATGAAAAATTCAACCTCTTCTGCCTAGAAGATGAACAGCTGCTGTGTGCGGCATGTCGCACATCAGAAACACATGAAAATCATAAATGTTGCACTATAGATATTGCGGCACATGACCATAAGAAGGATCTTAAAACTGCACTCAGACACTTACAGGACAAGTATCAGGTCCTTAAGAAGGTCAAATCAAATTATGATCAAACTGCAAAATATATTAAGTATCAGACCAAGAAAACAGAGCAGCAGATAAAGAAGGAGTTTGAGAAGCTTCACCAGTTTCTTCAAGATGAAGAAGCATCCAGATTAGCTGCTCTGAGACaggaagaggagcagaagaGTCTGATGAGTAAACAGAAGATTGAAGAGATAAACATATTGATAGCATATTTTTCCTATATTCTCAATATGGTGAAAGAGGAAATGGGATGTGAGAATATCTCATTTATGCAGACCTTAAGAGCAGTAGCAAAAGGCAGAGCTCAGTGCTCCTTGCAGGAGCCACAGATGTTTTCAGGAGTGCTGATTGATGAAGCAAAGCACCTGGGGAACCTGAGGTTCAGAGTATGGGAGAAGATGCAGGAGATTGTTCAGTACAcCTCTGTGATTTTGGACCCAAACACAGCCAACCCTGAACTCAGCCTTTCAGATGACCTGACCAGTGTCCAGCGCAGTCATGGAACACAACACCTCCCTAATAATCCAGAAAGATTCGATCAGTTTTACTGCGTCGTAGGCTCTGAAGCATTTACCTCAGGCATCCATGGCTGGGACATTGAGGTCACAGACGTGCCTGATTGGGAAGTCGGTGTGACAACTGCATTTATCCCAAGGACCGGAAAAACTGACTTGGATATTGAAACCTGGAGTGTCAAGGCTTCTCATGGTGAATATCTGGCACGGTTTTCAACAGCAGCAACCTTTAAGCTCCATCTTAAAGAGAGTCTACGGAGGATCAGGGTTCGGCTGGACTGGGAAAGAGGAGAGGTGGAATTCTCCAATCCTGTTACTGACACATATCTGTTTACTTTCAGCCATTCTTTTACTGAGGGAGTCTTTCCTTTCTTCATTACTCCCTGCAAACATTCATTTCTGAGGATACTACCATTATGCATAGATTTTACGGTGAATACAGAACAGGGTTTGGAGTGAGGCAAGTAGCTAATGCATTAATCCATggagtaactgcagtgtacttcagaaaaaaatgatagaTTAGaatatcactttattaatcccacgGGATAAATTTTGTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924393.2 True 1638 mRNA 0.43 6 5254686 5258559

Neighbor

gene id symbol gene type direction distance location
LOC113532776 LOC108256651 coding upstream 134 5248910 ~ 5254552 (+)
LOC113532629 LOC108256652,LOC108256651 coding upstream 6542 5241135 ~ 5248144 (+)
LOC113532857 NA coding upstream 14514 5236219 ~ 5240172 (+)
LOC113532508 LOC108256086 coding upstream 20637 5228577 ~ 5234049 (+)
ncam3 NA coding upstream 51282 5190018 ~ 5203404 (+)
fam171a1 fam171a1 coding downstream 1879 5260438 ~ 5294743 (+)
nmt2 nmt2,LOC107738873,LOC107681575 coding downstream 39743 5298302 ~ 5307139 (+)
crot crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792 coding downstream 58639 5317198 ~ 5331214 (+)
rundc3b rundc3b,LOC107666772 coding downstream 97623 5356182 ~ 5386626 (+)
dbf4 dbf4 coding downstream 142374 5400933 ~ 5411050 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 224896 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 271006 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 330050 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 450627 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 451175 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 282799 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 347311 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 574434 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 583660 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1389721 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 265370 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 324531 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 331005 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 820435 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 859902 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 52650 5311209 ~ 5314614 (+)
G326997 NA other downstream 73709 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1965463 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2642956 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3114126 8372685 ~ 8378896 (+)

Expression


Co-expression Network