LOC113532776 (LOC108256651)


Basic Information

Item Value
gene id LOC113532776
gene name LOC108256651
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5248910 ~ 5254552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924394.2
AATTATAAAAACCCGGAAGTGGAAAAAGGACTCATTGGGCTGGGTTTGTCATGAatacctggcaaccctgactcAAACTGAAAGTAAAAACAGATAAGGTACTGTAGGTTATTTCCAGAGTAAATAGAATAGGCTGGTATTTAGAAAGTGTATGACCGAGAAGTTGTTGAGGTATTCTGAAGGCTCTGGCTATGGCGTCTAAACGTTCCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCAGCTGCGTTCACCGGTACTGGGACATCAAACGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCCGCGATAAACCCTACGATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATGGAGAGAAGCTGAAACTCTTCTGTGTGAATGACGGACAGGCCGCGTGCTTGGTGTGCAGAGATTCCAGCAAACACCTACAGCACCGCTTCATCCCTGTCGACGAAGCAGCTGCTGAACAAAAgGATGTTCTTAAGAATGCAGTGAatacaatgaaaatgaaaattaagaGCCTTCACGATGCCCAGGTTAATTTTCATCGAAATGTATATCACATAAAGCAACAGGCCAAGTACATGAAGAAGCAGATTAATGAGGAGTTTCGGAAACTTCAGCAGTTTCTGCAAGATGAAAATGCAGCCATGATGACTAAACTGGAGGTGGAAGTGCATCAGAAAACAGAGAGTCTggaaaacaaaatagaaaaaactaAACAAGAGATTCTGGCTCTCACAAACACTATTGGAGACATAAAAGTGGAATTGCAATCTGAAGACATCAAATTCCTGAAGaactttgaGACAAATATGGCAAAagTCCAGTACAAAGATTCAGATCTAAATATTACTTCAGGAGAAGTGATCAGTGTTGCAAAGTACCTGGGCAATCTGCAGTTCCAAGTCTGGAACAAAATGCAGAGTTTCATCAAATACACTCCAGTTATCTTGGATCCGAACACAGCTCACTCGCAGCTCATCCTGTCCCCGGATCTGACCAGCGTGAGAGACAGTGATGATGACCATGAAGACCAGAATGACGTGCTGAGACCTCCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGCTCAGAGGGCTTCTCTTCAGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTCGGTGTGACCACGGAGTCGGTTCAGAGAAAAGAACCCAATGTTTTTCCCAGCGGTGCTTGGGGTATTGGGTATGATGACCAAAAGCTGTGTGCTAGGTCTCCTTCAGAAACATATACTCCTCTCACTTTGGCTGCCAAACCCCAGGTGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCCTGCCAGTGATGCCGTTATCCACATGTTCTCTCACCATTTCACTGAGAAGGTCTTTCCATTCTTCCACAGCATGTGCAGTCTGTCTCCTCTGAAGATTATGCCTCTCCAGCCTTTTGTGGTGCTGAGAAAGCTCCCTTAATGCTCTTAATGTTTCTGCAGGTTGTACTAGCAATGACTCATGCTGCTGTGGACATTATGGACAATGGAAATACACATGATGAtacagttttgttttgctttctgtaTCTTCCACAGATAAGGGGGAACGCAATGGAGTATGACATCATTAAATCCGGGACATAATACATGACGTTTTATTCGGAAATGCACTTTAATACTTTTACAAGTTCTGTATATCTTCTATATCTTTAGCTTTGCCATTAGTTATACTCAAACTGTGTGCTTACTCATTACATAGCTCAGGGGATGTTTTCTTTCGGTTTTCACCCTGGTTTTCCCCTAGTTGATTACTTCATACTTGGAAGTTTTCAAATGATATTTCCATTAAGTGtaacaggtgaacacacagTTGGAAAGAGGTCTTCTGCATTTTCCCACTTTTCAGTAGCAGATATTAATAACACTAAATGCTGTCTCAAATACTGGCTTTTTTCAAATGCAAAGCACCTCAGTGAACCGGCTTGTAACTCACTCACATACTTACTCAGTGACTCACATTTAGCTTGTTGAAAATTTTCCACTAGAGGCAGCTCTTGGCTCTCTAGTAGTTTTGTATGGACCAGTACAATGCAGTATTTCCCACACGTACGTTATACTTGGGCAGTGCATttcaacaaatcaaatcaacacGCCTTGCTTTGATTTTCGAATTAGACTTTCAGGATGTTGTTCAAATTTAGTAACTGATGAATAGattcaaatgtaaatttaacatttttgatgaCTCGAGATGGATTTAACCAATGTGATCTCTTGATTCCTCAGTCCTACATCCTTCAAGACCCATGACCCAAAAATCATTGGAAGACCACCATCTTTTAGGACATACCAGTTCTCAAACAATAACAAGAACCACAGATATAAATGAACAGATATAAATCTCGAATAAATAAACGATGGGTAAACATTGAGGGCCTAAGTACTGTTCTGTACAAGCAGATCAGTTTCCCTTTAAATTTGCTTTAAATTGATGCTTCAGTGAGCAAGGATGTCTCATTTAGTAACTATGTTTGCCCTCAGTGGTTTCAAGGGGAAGACTTTTAATCCACCACAACCAGTGAACTGTGCAGGTGAATCTGCAGCATCAGTTCAGTGACATGCATTCAAAATTGTTTTAacttttgcaaaattattttgttaataatataGTGCAATTACTGTGACATTATTCTTAGTGGCATATATAAAGCCTTATTTAAAAGCTCATGGTACATTCTGGCAATCTAGCTCGGTTAGCGATCTGGCTTTAGACAGAACCACTAAATTCAAAACTTTAGGGTGCAGTTAGGAGTCTGTGTACGGCACATGAGAGCGAAGGATTATAAACGTATAAAATCAACTGCATCAAGAATGTAAATTGTCATCTGATTTACATTAAACATGCTTTACTTTA
>XM_026924395.2
ATAATTATAAAAACCCGGAAGTGGAAAAAGGACTCATTGGGCTGGGTTTGTCATGAatacctggcaaccctgactcAAACTGAAAGTAAAAACAGATAAGGTACTGTAGGTTATTTCCAGAGTAAATAGAATAGGCTGGTATTTAGAAAGTGTATGACCGAGAAGTTGTTGAGGTATTCTGAAGGCTCTGGCTATGGCGTCTAAACGTTCCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCAGCTGCGTTCACCGGTACTGGGACATCAAACGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCCGCGATAAACCCTACGATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATGGAGAGAAGCTGAAACTCTTCTGTGTGAATGACGGACAGGCCGCGTGCTTGGTGTGCAGAGATTCCAGCAAACACCTACAGCACCGCTTCATCCCTGTCGACGAAGCAGCTGCTGAACAAAAgGATGTTCTTAAGAATGCAGTGAatacaatgaaaatgaaaattaagaGCCTTCACGATGCCCAGGTTAATTTTCATCGAAATGTATATCACATAAAGGCCAAGTACATGAAGAAGCAGATTAATGAGGAGTTTCGGAAACTTCAGCAGTTTCTGCAAGATGAAAATGCAGCCATGATGACTAAACTGGAGGTGGAAGTGCATCAGAAAACAGAGAGTCTggaaaacaaaatagaaaaaactaAACAAGAGATTCTGGCTCTCACAAACACTATTGGAGACATAAAAGTGGAATTGCAATCTGAAGACATCAAATTCCTGAAGaactttgaGACAAATATGGCAAAagTCCAGTACAAAGATTCAGATCTAAATATTACTTCAGGAGAAGTGATCAGTGTTGCAAAGTACCTGGGCAATCTGCAGTTCCAAGTCTGGAACAAAATGCAGAGTTTCATCAAATACACTCCAGTTATCTTGGATCCGAACACAGCTCACTCGCAGCTCATCCTGTCCCCGGATCTGACCAGCGTGAGAGACAGTGATGATGACCATGAAGACCAGAATGACGTGCTGAGACCTCCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGCTCAGAGGGCTTCTCTTCAGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTCGGTGTGACCACGGAGTCGGTTCAGAGAAAAGAACCCAATGTTTTTCCCAGCGGTGCTTGGGGTATTGGGTATGATGACCAAAAGCTGTGTGCTAGGTCTCCTTCAGAAACATATACTCCTCTCACTTTGGCTGCCAAACCCCAGGTGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCCTGCCAGTGATGCCGTTATCCACATGTTCTCTCACCATTTCACTGAGAAGGTCTTTCCATTCTTCCACAGCATGTGCAGTCTGTCTCCTCTGAAGATTATGCCTCTCCAGCCTTTTGTGGTGCTGAGAAAGCTCCCTTAATGCTCTTAATGTTTCTGCAGGTTGTACTAGCAATGACTCATGCTGCTGTGGACATTATGGACAATGGAAATACACATGATGAtacagttttgttttgctttctgtaTCTTCCACAGATAAGGGGGAACGCAATGGAGTATGACATCATTAAATCCGGGACATAATACATGACGTTTTATTCGGAAATGCACTTTAATACTTTTACAAGTTCTGTATATCTTCTATATCTTTAGCTTTGCCATTAGTTATACTCAAACTGTGTGCTTACTCATTACATAGCTCAGGGGATGTTTTCTTTCGGTTTTCACCCTGGTTTTCCCCTAGTTGATTACTTCATACTTGGAAGTTTTCAAATGATATTTCCATTAAGTGtaacaggtgaacacacagTTGGAAAGAGGTCTTCTGCATTTTCCCACTTTTCAGTAGCAGATATTAATAACACTAAATGCTGTCTCAAATACTGGCTTTTTTCAAATGCAAAGCACCTCAGTGAACCGGCTTGTAACTCACTCACATACTTACTCAGTGACTCACATTTAGCTTGTTGAAAATTTTCCACTAGAGGCAGCTCTTGGCTCTCTAGTAGTTTTGTATGGACCAGTACAATGCAGTATTTCCCACACGTACGTTATACTTGGGCAGTGCATttcaacaaatcaaatcaacacGCCTTGCTTTGATTTTCGAATTAGACTTTCAGGATGTTGTTCAAATTTAGTAACTGATGAATAGattcaaatgtaaatttaacatttttgatgaCTCGAGATGGATTTAACCAATGTGATCTCTTGATTCCTCAGTCCTACATCCTTCAAGACCCATGACCCAAAAATCATTGGAAGACCACCATCTTTTAGGACATACCAGTTCTCAAACAATAACAAGAACCACAGATATAAATGAACAGATATAAATCTCGAATAAATAAACGATGGGTAAACATTGAGGGCCTAAGTACTGTTCTGTACAAGCAGATCAGTTTCCCTTTAAATTTGCTTTAAATTGATGCTTCAGTGAGCAAGGATGTCTCATTTAGTAACTATGTTTGCCCTCAGTGGTTTCAAGGGGAAGACTTTTAATCCACCACAACCAGTGAACTGTGCAGGTGAATCTGCAGCATCAGTTCAGTGACATGCATTCAAAATTGTTTTAacttttgcaaaattattttgttaataatataGTGCAATTACTGTGACATTATTCTTAGTGGCATATATAAAGCCTTATTTAAAAGCTCATGGTACATTCTGGCAATCTAGCTCGGTTAGCGATCTGGCTTTAGACAGAACCACTAAATTCAAAACTTTAGGGTGCAGTTAGGAGTCTGTGTACGGCACATGAGAGCGAAGGATTATAAACGTATAAAATCAACTGCATCAAGAATGTAAATTGTCATCTGATTTACATTAAACATGCTTTACTTTA
>XM_034298250.1
AGTATAATTATAAAAACCCGGAAGTGGAAAAAGGACTCATTGGGCTGGGTTTGTCATGAatacctggcaaccctgactcAAACTGAAAGTAAAAACAGATAAGGTACTGTAGGTTATTTCCAGAGTAAATAGAATAGGCTGGTATTTAGAAAGTGTATGACCGAGAAGTTGTTGAGGTATTCTGAAGGCTCTGGCTATGGCGTCTAAACGTTCCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCAGCTGCGTTCACCGGTACTGGGACATCAAACGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCCGCGATAAACCCTACGATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATGGAGAGAAGCTGAAACTCTTCTGTGTGAATGACGGACAGGCCGCGTGCTTGGTGTGCAGAGATTCCAGCAAACACCTACAGCACCGCTTCATCCCTGTCGACGAAGCAGCTGCTGAACAAAAgCAACAGGCCAAGTACATGAAGAAGCAGATTAATGAGGAGTTTCGGAAACTTCAGCAGTTTCTGCAAGATGAAAATGCAGCCATGATGACTAAACTGGAGGTGGAAGTGCATCAGAAAACAGAGAGTCTggaaaacaaaatagaaaaaactaAACAAGAGATTCTGGCTCTCACAAACACTATTGGAGACATAAAAGTGGAATTGCAATCTGAAGACATCAAATTCCTGAAGaactttgaGACAAATATGGCAAAagTCCAGTACAAAGATTCAGATCTAAATATTACTTCAGGAGAAGTGATCAGTGTTGCAAAGTACCTGGGCAATCTGCAGTTCCAAGTCTGGAACAAAATGCAGAGTTTCATCAAATACACTCCAGTTATCTTGGATCCGAACACAGCTCACTCGCAGCTCATCCTGTCCCCGGATCTGACCAGCGTGAGAGACAGTGATGATGACCATGAAGACCAGAATGACGTGCTGAGACCTCCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGCTCAGAGGGCTTCTCTTCAGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTCGGTGTGACCACGGAGTCGGTTCAGAGAAAAGAACCCAATGTTTTTCCCAGCGGTGCTTGGGGTATTGGGTATGATGACCAAAAGCTGTGTGCTAGGTCTCCTTCAGAAACATATACTCCTCTCACTTTGGCTGCCAAACCCCAGGTGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCCTGCCAGTGATGCCGTTATCCACATGTTCTCTCACCATTTCACTGAGAAGGTCTTTCCATTCTTCCACAGCATGTGCAGTCTGTCTCCTCTGAAGATTATGCCTCTCCAGCCTTTTGTGGTGCTGAGAAAGCTCCCTTAATGCTCTTAATGTTTCTGCAGGTTGTACTAGCAATGACTCATGCTGCTGTGGACATTATGGACAATGGAAATACACATGATGAtacagttttgttttgctttctgtaTCTTCCACAGATAAGGGGGAACGCAATGGAGTATGACATCATTAAATCCGGGACATAATACATGACGTTTTATTCGGAAATGCACTTTAATACTTTTACAAGTTCTGTATATCTTCTATATCTTTAGCTTTGCCATTAGTTATACTCAAACTGTGTGCTTACTCATTACATAGCTCAGGGGATGTTTTCTTTCGGTTTTCACCCTGGTTTTCCCCTAGTTGATTACTTCATACTTGGAAGTTTTCAAATGATATTTCCATTAAGTGtaacaggtgaacacacagTTGGAAAGAGGTCTTCTGCATTTTCCCACTTTTCAGTAGCAGATATTAATAACACTAAATGCTGTCTCAAATACTGGCTTTTTTCAAATGCAAAGCACCTCAGTGAACCGGCTTGTAACTCACTCACATACTTACTCAGTGACTCACATTTAGCTTGTTGAAAATTTTCCACTAGAGGCAGCTCTTGGCTCTCTAGTAGTTTTGTATGGACCAGTACAATGCAGTATTTCCCACACGTACGTTATACTTGGGCAGTGCATttcaacaaatcaaatcaacacGCCTTGCTTTGATTTTCGAATTAGACTTTCAGGATGTTGTTCAAATTTAGTAACTGATGAATAGattcaaatgtaaatttaacatttttgatgaCTCGAGATGGATTTAACCAATGTGATCTCTTGATTCCTCAGTCCTACATCCTTCAAGACCCATGACCCAAAAATCATTGGAAGACCACCATCTTTTAGGACATACCAGTTCTCAAACAATAACAAGAACCACAGATATAAATGAACAGATATAAATCTCGAATAAATAAACGATGGGTAAACATTGAGGGCCTAAGTACTGTTCTGTACAAGCAGATCAGTTTCCCTTTAAATTTGCTTTAAATTGATGCTTCAGTGAGCAAGGATGTCTCATTTAGTAACTATGTTTGCCCTCAGTGGTTTCAAGGGGAAGACTTTTAATCCACCACAACCAGTGAACTGTGCAGGTGAATCTGCAGCATCAGTTCAGTGACATGCATTCAAAATTGTTTTAacttttgcaaaattattttgttaataatataGTGCAATTACTGTGACATTATTCTTAGTGGCATATATAAAGCCTTATTTAAAAGCTCATGGTACATTCTGGCAATCTAGCTCGGTTAGCGATCTGGCTTTAGACAGAACCACTAAATTCAAAACTTTAGGGTGCAGTTAGGAGTCTGTGTACGGCACATGAGAGCGAAGGATTATAAACGTATAAAATCAACTGCATCAAGAATGTAAATTGTCATCTGATTTACATTAAACATGCTTTACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924394.2 True 3050 mRNA 0.42 6 5248915 5254552
XM_026924395.2 False 3046 mRNA 0.42 6 5248913 5254552
XM_034298250.1 False 2959 mRNA 0.42 5 5248910 5254552

Neighbor

gene id symbol gene type direction distance location
LOC113532629 LOC108256652,LOC108256651 coding upstream 766 5241135 ~ 5248144 (+)
LOC113532857 NA coding upstream 8738 5236219 ~ 5240172 (+)
LOC113532508 LOC108256086 coding upstream 14861 5228577 ~ 5234049 (+)
ncam3 NA coding upstream 45506 5190018 ~ 5203404 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding upstream 98683 5144970 ~ 5150227 (+)
LOC113532775 LOC108256159 coding downstream 134 5254686 ~ 5258559 (+)
fam171a1 fam171a1 coding downstream 5886 5260438 ~ 5294743 (+)
nmt2 nmt2,LOC107738873,LOC107681575 coding downstream 43750 5298302 ~ 5307139 (+)
crot crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792 coding downstream 62646 5317198 ~ 5331214 (+)
rundc3b rundc3b,LOC107666772 coding downstream 101630 5356182 ~ 5386626 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 219120 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 265230 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 324274 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 444851 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 445399 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 286806 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 351318 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 578441 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 587667 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1393728 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 259594 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 318755 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 325229 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 814659 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 854126 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 56657 5311209 ~ 5314614 (+)
G326997 NA other downstream 77716 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1969470 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2646963 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3118133 8372685 ~ 8378896 (+)

Expression


Co-expression Network