col28a1b (LOC108256731)


Basic Information

Item Value
gene id col28a1b
gene name LOC108256731
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2583219 ~ 2607036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924423.2
CTGCACCATCAGCATGCCAGATCCATGTAAGCATGTGACAGGATTATTGATATGAAATCATTCACGTCTGCATGATATGAAAGGTTAAACATGAACTCGGCTAAGTTGTGGAGTGTGACGCTGCTGTGCTTTGCGTTATTATTCCTTTCACACGACGTCCGAAGTCAGAACAGAAGAAACCAAACGAACAACTTGACCACAAAAAATGGAAAGGTGCTGGTGTGTGCGCTGGAGTTGGCCTTCCTCCTCGACAGCTCAGAGAGCGCCATGTCGTACCGTTTTGAGAAAGAGAAGGACTTTGTGCGCTCGTTCAGCTCCCGGGTGGTGAAGATGCAGGTTGCCGACTGGCACCTGATGCCCCGCTTCGCTGTTCTGCAGTACAGCAGCTCTGTGTCCATCGTGCAGAGCTTCTCCGACTGGCATGGACTGGACAACTTCCTGGCCAGTGTGGGCTCCATGGCCTACATCGGGCAGGGCACGTACTCATCCTACGCCATCGGGAACGCCACTGAGCTGTTTGTACGTGAAACTGATGACAAGAACGTCAGGGTGATGCTGCTGATGACTGACGGCTCCGATCATCCACGGAGTCCCGACATCCTGGCTGCCACCGCTGAGGCCAAAGGTCACAACATCAAGCTCTTCACCATCAGCTTGTCATCAAGGGGCAGCCAAAACAGCGCCAAGCTGCGAGCCATTGCTAGCAGTCCGGTGCAGCGGTTCGTGCACAACCTCAACGATCCAGACCTTGAGGAAAGACTGCTTCAGGAGCTCaAAAGAGTGGCCAACAATGAATGTCCACGAgtgcaagcgtgtgtgtgtgagaaaggagACAGAGGAGCTCCGGGGAACCCTgggaaaaaaggagatCCGGGGATTGAAGGACCGCAGGGACCGAAAGGTGTAAAGGGAGACTTTGGACCTGCAGGATCCCCGGGACCAGATGGACCTGAGGGACGACCCGGGTACAAAGGTGATAAGGGCGACAGAGGAGAATGTGGAGCTCCTGGATCAAAAGGAAATAAGGGTGCTGAAGGACCTCTGGGACTGAGAGGAGTCAGAGGAGAGCAGGGCCCCCAAGGGCCACCGGGGGACGAAGGACCTGAAGGACAGGAAGGCCCCAAAGGAGATCGCGGACTTCCTGGTGCAACTGGGCCTCGAGGGGATATCGGCGTTGGATTTCCTGGTCCTAAGGGGGAGAAGGGAAACCAGGGAAGACCAGGCCCTGTAGGTCCAATCGGAACAGGTGAACCAGGCCAACCTGGTCCACGAGGACTTCCAGGGCCTCAAGGGCTTCCTGGCTTCCCAGGAGAGGGCCTAGTAGGGCCAAAGGGGGATCGAGGTTATAACGGTTCTACTGGAGCACGTGGACCACCAGGTATTGGCTTCAAGGGAGAAGAGGGTAATGCTGGGCCTCCTGGGGCTCCTGGTCCCATAGGGCCTCCTGGATTGGGAATTCAAGGAGAAAAGGGAACCCAGGGTCCAATAGGTCCTCCTGGTCCCAGAGGGATCCCAGGGATAAGCATCACGGGTGACAAGgGAGACCGTGGCTTCCCGGGAGAACGTGGACCACAAGGACAGAAAGGTGTCGGAGAGCCGGGAGCCAAGGGTGAGCCTGGCTTACAAGGTGTCCCAGGAGACCCGGGTGCTCCAGGAGAAGACGGAGCAAGAGGACCAAAGGGTGAAACCGGTGTTCCTGGGCCTAGAGGACTAGAGGGACCACCTGGTAAAGGTCTACCTGGAGAAAAGGGAGAGCGAGGAGAGAGAGGATCAAGAGGACAACCAGGAGTCATGGGACCAATGGGTCCAATGGGGACCAAGGGAGAACTAGGAGGTTTGGGGCTTCCTGGGGTAATTGGACCTCCAGGAAGGGGGTTACCAGGCAGTAAGGGGGATCCTGGACCACCGGGACTtccaggacctgctggagaaACAGGAATAGGGATCGCTGGGCCAAAGGGTGAACGAGGACTACCTGGACCTGTAGGACCACCAGGGCTGAAGGGAGTCGGCTATCCTGGACCACCTGGTCCTCCAGGCACTCAAGGACTACCTGGAGAGCCCGGTCCAGAGGGGACAGGCTTTCCAGGACCAAAGGGGGATCAAGGTTCTGCAGGTCCTCCAGGGCCAGTTGGAGCACCAGGAATTGGACTTTTAGGCCCCAAGGGTTCTATAGGTCAGCCCGGCCCATCTGGCCCACCCGGGCTCCCAGGAGAGGGAATCCAAGGCCCAAAGGGTGACCCTGGATTCCAGGGATTAGTGGGACCAAGAGGAGCCCCAGGAGAGGGTTTACCTGGGCAAAAGGGGGACCGTGGGTTTTCGGGAGAACGAGGACGCAAAGGGGACAAAGGAGGACAAGGGGAACTAGGACAAACAGGGCCAGTGGGTAGGCCAGGCCAAAAAGGAGAACCTGGCCTTACTAGAGAAGAAGTtgtcaaattaattaaatccaTTTGTGGCTGTGGCGTGACTTGCAGATTCAACCCCCTGGAGCTGGTTTTTGTGATCGACAGCTCGGAGAGCGTGGGTCCTGACAACTTTGAAATCATAAAGGGCTTTGTGAACACCCTGATCGACCGTGTTTCTGTCAGGCCCAACGTCACACATGTTGGGATTGTGCTGTACAGTCACATGACTGCGGTGATCACTGATCTGTATCGACCCCTAAGCCGTGATGAGGTGAAATCTGCTGTACGCCGAATGCCCTACATGGGGGAGGGAACCTACACAGGAAGTGCCATCCATCAGGCCAATCAGCTGTTCCGTTCGGCCCGCCCTGGAGTTCGGAAAGTGGCGGTGGTGATTACAGACGGCCAGGTGGACCAACGGGACGTGGTTAAGCTGGAGGATGCAGTGCGGGACGCACACTCCAGCAACGTTGAGATGTTCGTCATTGGTGTGGTGAATCAAAGTGAGCCATTTTATGAGAGCTTCAAGAGAGAGCTGGAGTCCATCGCTTCTGATCCGGATGAGGAGCACATCTATCTGATTAGTGACTTCAGAACACTCACTGCATTGGAGAGTAAGCTGCTGGGTAAACTCTGTGAGAACAGTGACGACTTGTTGTTCAGGCAAACGCCCAGCCCTGATCTCCTCCCTGTAACCCCCAGACCCCCATTTTACAATGAGGGACTAGGGAGGAGGACACACACAGTGACGTTTAAAGCAGACTTCGCACAGCCAGGAGCAGGAGAGTTCTTAGACAGCACCAGCGCTCCGCTCTTCAGTGGGGAGAACCAGAACAGTCTGGATGATCTGTGGCGCATCACATATGGTTCTGATCCAGGAAAACCCTTACAGAGACCGGAACCAcacaccaccagcaccaccaccaaGCCACGCCTAATACTGATTCAGGATGACTTTAGCAAAGACGATGCCTGCCTGCAGCCGCTCGATCCCGGGCCCTGTCGCACCTACGTGGTGAAATGGTATTACGACCCCAAGGCCAACTCCTGCGCTCAGTTctggtttggaggttgccacgGCAACCGTAATCGGTTCGACACAGAGAGCATCTGCCGGAAATCCTGCGTCATAAACTAAATCATCGCTGACCATTAAGTAATGAAAAAGCAAGGCTATAAACCCAAGagtatttacttttatttatttaagccgAGCAGTGGAGTGTTAAAAGCAGGGAGGTTTAGGAGATGGAGGAACACAAATACATTCACGGGTGCtaacactgggcctcatttatcaaatcTTTCGCAGGACCATTTATGCAAAGAATGAGGTGTTCATGGGAatggaaaaatgttcatattgcTCCTGAGTTTGTATAAATTTACGTATAAGTAGACTCATTAATGTGAACCCTGACTGATCAGCTTAGAATCGTATAATTGGTAATGAGTTGTATAATATGTGGATTATACAATACTTCTTCACTACTTCAATACTACATCACTTACAGagtatatttcaatattttaagaTTAGCCATTCAATTAGAACAGAAGTAATGGCACACTATTTAAGGAGCAAGAGTTAGCAAGTGTCTATGGAATATTTAGTGCATGCCAGACTTTTAGTCGTCATTTTGTCTCTTTCAGctccttttatggagttttgtgggcgtggctaaatgtaaatcagctgtgccatggaAATTACATGCCATGATTTACAGCTGTTTGGCATTTATCAACGTACGCACGTgggtacaaagaaaatcagtgatTTTTGTTTTCGAAATGTGTTCAATTtgccaaaaacatttacacaaaactttattaaatgagtgataaatgaggcccactgtggGAACAGTTATAAAATCATACAATATACAGATCTCTACATCAATATAATGGAGATATATGGTTTTTATATTTCCTTTTCTGTCACGTCTAGGTGACCAGACCTGTAGGAGGTTTTAGTAGCTTATTTAATCAGTATCTCTTTCCTGGGAAGGATATATGATCTCGTAAATCCTAGCAAAATGAACACTTCTTACATCTTTTGAAATCAGTCAATCAATAGTCATTTCATCAGGCCGTCTATTCATATCTCACGCTTTCCTTAGTTTATCATGTGTATTACATTTGAGATTGTTAATTTTTCCTCCTAAACGccactgtaactgtgctagcaataacaACGCCCCCCTGTGACATCGTCAAAAAATACGAGACGAAAAATCCACATCTATATGACACTTACCAAACAACAAatcagcaccagaatcactaaacacatcagaaatatttcagtatatacatatatatttcatgtgtttcagttTGGAGCTGTATTTCTCCTTATGTCCATACTGATAAACTATTTTTATAACATTCTAAAATACAGTGGTGTGTGATTAATAAGGTTTCATCAGTTACAAATTCCTGTCTCACATCAAATTCCATGGACAATGTTGTTAATTTTTGCTGCTTCGCTCTTAATCATATTACTGTCATTTAATGAATAAGCTGCATGTTAGACGTGACTGCTAACGGAAAGTTATTTCACAAGATCCTGTGCTGCCTTTCCATCATTTAAACACCATTATACAGGATTCACTTAATGTAAAACATAGATACTAAATATAgaatttaaatatacacaccCTTGCTGGAATTCAGTTCCTCTACATTCATGGATTCATGGTTACAAATCTTATAAATGAATTTTGGATCCCAAAATGAATCCCAGTCGATTTTCTCTAGTGTGTTATTTGCTTTAATGAATCCAGTTGTGTGTATAATAATCCCCTTATATTTAAGGAAAGATCTTCGTGTTTCCTTTTTGCTGTTGCTGGCATTCACTTCTGTTTACCCACCTGCTGCGCTtcaatgattaatttttttaatgtctaatCTGGAGCTGAATAAGAAAGCGTTCGCCTCCACATGTTATCAAAGTGACATGTCACATGCTTGCACAAACATATCAGGGTTATATATCAAAAAGCAATTAATCtgagtacaaagaaaagctTAAAGTGATCACTCTCAAGGGCAGGATTTCAACAAGAACACAACCTTCACTTTTGATCATGAGATCAAAGTTTTGACATTTGACAAGCAAGACTTGAAACGTTTGTAAATATTAACATCAGATATGTTTATACATGCCCGTATCAAAATGACTTTTAGACACACTTTAAGGTTAATTCAAATTTACATGAACAATTCATAAGACAATTAGAAAGTGAAAGTTTGGTTTTATAAGATTCTATCtgactgtttattattaagcaaaatctcattaaatatctaataaaggttatttaataaactcagcagaaaataacattttgagACCACACTATGATATGCATTTTGATAAGCTTTTTATATATTGTCTTGGATCTAAAATACAGgatatttcactttttaaaatataaaactttttcCAAAACAAGATATTTTACCTTGAAAAAGGGAAACGTTCAAAGTCTCGAATATCGAATATTGAcaattctgcactatttctatatcgatattaatttgtaattttgctCATGTTAACTCTGTTCAGCTTTTGAGTCTTATCTCTTCCACTGAAGCGTGTGTTCAGGATTTGATctatcatcaggttttacacaaagtTGTGGGGTCCATTCTAGCTTGTGTGCATGCTGTCAATAAAGCAAAAGCAGGTCGTACGAAATACTtcgaaattctgaaattcatgtatatatttctaAGATTTTACTTTTGCCtcaagttgttgctgataaCAGAAttagtaatgaaaaaaaaaacttgaattaAATTAGATAAGaatgcaaaacagaaacattttgacTAGAGggctcagacttttggaccccgcCTACAGGATGTAGAACATCAACAGCTAAAAAGTTACTTACTGAAGCTTTAAGTCTGTTCCTTTATGTcagagggaaaataaa

Function

NR:

description
PREDICTED: collagen alpha-1(XXVIII) chain-like

GO: NA

KEGG:

id description
K23619 COL28A; collagen type XXVIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924423.2 True 6367 mRNA 0.46 35 2583219 2607036

Neighbor

gene id symbol gene type direction distance location
ica1 ica1,LOC107592479 coding upstream 20138 2554120 ~ 2563081 (+)
LOC113532859 LOC108256203 coding upstream 33322 2542942 ~ 2549897 (+)
LOC113533066 thsd7a,LOC108256167 coding upstream 46159 2426744 ~ 2537060 (+)
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding upstream 210779 2364753 ~ 2372440 (+)
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding upstream 220220 2358315 ~ 2362999 (+)
slc25a32b slc25a32,LOC107688281,LOC107756894,LOC107726671 coding downstream 39745 2646781 ~ 2656914 (+)
pbx2 LOC108256343,LOC108439298,LOC103040777,LOC107711540 coding downstream 633406 3240442 ~ 3251360 (+)
tap1 tap1 coding downstream 658247 3265283 ~ 3278447 (+)
brd2b LOC108256339,LOC103041900,LOC107592490 coding downstream 672961 3279997 ~ 3295032 (+)
LOC113532608 NA coding downstream 694519 3301555 ~ 3304044 (+)
G325271 NA non-coding upstream 182535 2400470 ~ 2400684 (+)
G325268 NA non-coding upstream 186332 2396673 ~ 2396887 (+)
G325247 NA non-coding upstream 248113 2334879 ~ 2335106 (+)
G325089 NA non-coding upstream 562831 2020184 ~ 2020388 (+)
LOC117595767 NA non-coding upstream 582215 2000137 ~ 2001004 (+)
G325462 NA non-coding downstream 37005 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 464813 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 532276 3139312 ~ 3208962 (+)
G325754 LOC108256342 non-coding downstream 651893 3258929 ~ 3260181 (+)
G325815 NA non-coding downstream 712881 3319917 ~ 3322330 (+)
G325435 NA other upstream 13480 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 367809 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 438694 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 663509 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1419605 1118268 ~ 1163614 (+)
hamp NA other downstream 1404344 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 1784484 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 1791623 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2313944 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 2317745 4924781 ~ 4930155 (+)

Expression


Co-expression Network