ubqln4 (ubqln4,LOC107726678,LOC107756885,LOC106580647)


Basic Information

Item Value
gene id ubqln4
gene name ubqln4,LOC107726678,LOC107756885,LOC106580647
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2339453 ~ 2349519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924439.2
ATGGCGGAGAACAGTGGCACAGATCCTGCCGTGGACAGGAACGCCGAGGAAAATGCTGCCACCAGCGGGACCATTATAATGGTCACTGTCAAAACACCTAAGGATAAGGAGGAAATAGCGATCTCGGAAGATGCGTCTGTTGCACAGTTCAAAGAAGAAATCTCCAAAAGGTTCAAGGCAAAGCAGGACCAATTAGTCTTGATCTTTGCTGGTAAAATCCTGAAAGACGGCGACACACTCACTCAGCACGGCATAAAGGATGGCCTCACTGTTCACCTTGTCATCAAAACTGCACAAAAGGCCACAGGCGGAGGTTCCACGGCTGCTTCGTCTAGTTCTGGTGCGTCGCAGGTCAGCAGCGGCACTGCAGCCACGGCGAACACCAGTCCAGCTGGCAACCTGGGCACATCGCAGGGCAGCGGGCCATCGCCGGCTCCCTCGCAGCCATCCAACATATTCACTGGCTTCGGTGACCTGTCCAGTCTGGCCAACCTGGGCATGGGCTCGGCCAACTTCATGGAGCTCCAGCAGCAGATGCAGCGGCAGCTCATGTCCAACCCGGAGATGCTCTCGCAGATCATGGAGAATCCACTGGTTCAGAACATGATGTCCAACCCCGACCTGATGAGGCAGATGATCATGGCCAATCCGCAGATGCAGCAGCTGATGGAGCGAAACCCCGAGATTTCACACATGCTCAATAACCCTGAGCTGATGAGACAGACAATGGAGTTGGCGAGGAACCCTGCCATGATGCAAGAGATGATGCGTAACCAGGACCGGGCGCTTAGCAACCTAGAGAGCATCCCCGGGGGATACAACGCTCTCCGGAGGATGTACACAGACATCCAGGAGCCCATGTTTAGCGCCGCACGCGAGCAGTTTGGAAACAATCCCTTCTCAGCCTTAGGTGGGAATACAGACACCTCGGGGGCCCAGCCCTCCAGGACAGAGAACCGAGAGCCACTGCCAAATCCATGGGGACCGCCTGAGACCAGTTCTTCTGGGACTGCCACCTCCAGCAGCTCTACCACAAGCTCCACCACCCCCACTGTCTCCAACCCCCTGGGCATCAACTCTGCCAGCTTGGGCTCCGGCATATTTAACAGCCCTGGTATGCAGAGCCTGATGCAGCAGATCTCAGAGAATCCTCAGCTGATGCAGAACATGCTCTCTGCTCCCTACATGCGCAGCATGATGCAGTCTCTGGCACAGAACCCTGACATCGCCTCGCAGGTGTTGATGAACAACCCTCTTTTTGCTGGAAACCCCCAGCTGCAGGAGCAGATGAGACATCAGTTGCCAGTATTTCTACAGCAGatgcAGAACCCTGAAGCCCTCTCTGTGATGACGAACCCTCGGGCCATGCAGGCTCTGATGCAGATACAGCAAGGCCTACAGACCCTCCAGACCGAAGCTCCTGGACTCATGCCCAGTCTGATTGCCGGAGGAGTTCCTGCCGGGATCCCCACAGGGGTTAACGTGACTTCTTCTGAGAGTGCTCCACCCCCAACTTCTGGACAGGGCTCCACTCCTGCTGCAGGAACCAACTCCTCCCAACAGCAGCTCATGCAACAGATGTTGCAGATGTTCGCCGGCGGAAGCGCATCGACCCAGACTCCAGAGGTGCGTTTCCAGCAGCAGCTGGAGCAGCTGAGCGCGATGGGCTTCATCAACAGAGAGGCCAACCTGCAGGCGCTCATCGCCACGGGGGGAGACATCAACGCCGCCATCGAAAGACTGCTCGGCTCGCAGCCATCTTAATCCCTTCAGCACCTAATCACAACCAGAGACAAGTCACAGTCACGAACACAGTCCCTCATCACCTAATATCTGACAGATAGACTGAATTCCAGTTGCTTCTTCCTTTAACGCGGTTGATCTGTGAATCTTAAGAAATTGGGGTTCTAAAATTTAttcccttaaaaaaaatcacaatggAATGACATCAAGCTAACCCCTCGTTCATTTCTGACTGCGTccattaataaatacatcagGGCAATGCTGTGAACCAAGTGTAGGTTATCATTCCTTTTAATTGACACATACTCACTCGAGGCACTACTTCTTCCTGGTTTTTGCGGAGTAGAAAAGCATAATGGTGATCTCCCAAGTCAGAAGAACTCTTTGTCTTTCATGAGGATGGTCAGTTTccttaattctctctctctctctctctctctctctctctctctctctctctctctctctctcaaatcaTGCCTGACTAAACCAGTATTTATTGCAAACACCTAGAGATTACCTTTTACTCCTTTATTGACGCTCCAGGATTCACAAAGCTTCTTGTTTGACATTAATTGCAATTTAATAGAGGAAGATGAGTCCTTGTCTGAGCATTATAACAGCCTCATGCAGACGATTGCTTACTCTTCATCTGTTAGAGgggaattaattttttttttttggaaagatgTGAGATATCCAGTCATCTCTTAGTCTTTTTGCCTTTTAGGAGCAGTATGATTGATTGAATTGCtggtttaaaaaacaattaagcTTGTGGCTTTGGGGTAAGGTTGTAACAAGGcatcaataaaaaatatttctcagCTTACAAGCAACGCTGAAAGCAGACACCATTTGTTTTGACCATATCTTTATGCTTTGAAATAGTACTCTAGTGTGTGGAAAAAAGACCCGCATTGTGTGCTGGATACATCATCTTACAGTTGATGTAGTGAGCAAGCCTGGTAACAGCATGAACGTGATGCTTTCCTGTGCACCGATCTCAGTGCTAATCATCATGAGTCTAATGGAACTAACAGTTGAGTTTTTGATGTGAATTAAAATGTGTTcaactttg

Function

symbol description
ubqln4 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Is expressed in muscle and trunk. Orthologous to human UBQLN4 (ubiquilin 4).

NR:

description
PREDICTED: ubiquilin-1

GO: NA

KEGG:

id description
K04523 UBQLN, DSK2; ubiquilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924439.2 True 2827 mRNA 0.50 11 2339453 2349519

Neighbor

gene id symbol gene type direction distance location
LOC113532585 LOC108256181 coding upstream 5729 2329248 ~ 2333724 (+)
LOC113532738 LOC108256190,LOC108256173 coding upstream 15387 2318318 ~ 2324066 (+)
LOC113532733 LOC108256181 coding upstream 22943 2313664 ~ 2316510 (+)
LOC113532735 LOC108256190,LOC108256173 coding upstream 27083 2310045 ~ 2312370 (+)
LOC113532734 NA coding upstream 42463 2295318 ~ 2296990 (+)
lamtor2 lamtor2 coding downstream 4585 2354104 ~ 2356216 (+)
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding downstream 8796 2358315 ~ 2362999 (+)
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding downstream 15234 2364753 ~ 2372440 (+)
LOC113533066 thsd7a,LOC108256167 coding downstream 77225 2426744 ~ 2537060 (+)
LOC113532859 LOC108256203 coding downstream 193423 2542942 ~ 2549897 (+)
G325247 NA non-coding upstream 4347 2334879 ~ 2335106 (+)
G325089 NA non-coding upstream 319065 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 327472 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 338449 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 407127 1927080 ~ 1932326 (+)
G325268 NA non-coding downstream 47154 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 50951 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 294522 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 722330 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 789793 3139312 ~ 3208962 (+)
LOC113533074 LOC108256184 other upstream 124043 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 194928 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 419743 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1175839 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1329230 956584 ~ 1010223 (+)
G325435 NA other downstream 216181 2565700 ~ 2569739 (+)
hamp NA other downstream 1661861 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2042001 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2049140 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2571461 4920980 ~ 4923681 (+)

Expression


Co-expression Network