fam171a1 (fam171a1)


Basic Information

Item Value
gene id fam171a1
gene name fam171a1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5260438 ~ 5294743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924452.2
GCTCTTACACTCCCttgaatctattttttttttaaccaggaGTTCTCGGGCGGCATCAACAGAGGATGTTGGGTGATTTTTCAGGATGATCTGCAACATCTGACCCAGGGATCAAAACATCCTAAATTATGGAAGAGAGCAGCAGCCTGAACGGATGTTTACTGCAATAGAAACTGACATCTTTTTTAGGAAGATTTCTCTTTTCTGCAAGTTTTAATAATGCGGTGTTTGGATCTCGGCAGATCCGCCGTGATTGTGCTCTGTCTTTTAGGATGCAATATCTGGAAAGCAGTAACGGAAGCTCTGCGAGAGGATAGCGACGCCAAAGAAGTGGCTCTGAAGGTCCACCTGAGTGACGCCAACACTCACCAACCTCTCTCCGATGCCACTGTGGAGGTCTTCGCCAATCACACCCCTGTCGCTAGGGAGACCTCCGGCAGCGACGGCAACATCTTCATCAGGTTCCCGTATCGCCTCGGTGACCTGCTTGTCATCACAGCTACCAAGCGCGGCTATGTCCCTAACTCCACCCCATGGAGACCAGCCAGGCTGCCTGTTTTCTCATCGCTGAGCCTGGATCTGCTTCCTGAGAGAGCTGCTACTTTAATAGTGTATGATGACGAGGTTCAAATCGTCTCTGGATACCAAGGATCGAGGCTTCAGCCGTGGGTTCAGTTCCAGAGGCGAGCTCTGAGTCTTCCTCCTAACGCCACCTACACCAACCTGACCGCCTTCCTCACTGTGACTCACTCGGGGCAGAACACACAGCACTTCCCGTACCTGCAGGGCCTCGGTTCTAACAGCACAGGCAGCGACCGCAGGTTTGAGCTGACCCCTGTAGCTGCCATCAGCGTTCACCTTTTGGGCAGCgatggggcggagcttcatgtCAGCGAGCCAATCAGTGTGAGTGTTCCTCTCCCTGTGAATAGCGGCTTGAAGGAGAATGACCACATTCCTGCCTGGAGGTTCGATCCCAAACTCGgagcctGGTTGAAGAGCAGTTTGGGCTACGtgcagagagaaggaggaggtgaGCTCATCCTTACCTATATCGCCCCTCAGCTTGGTTACTGGGTAGCAGCCATGTCTCCTATAAACACAGgtccTGTGGTTGCAAAGGACATCAGCACATACCACACTGTGTTCCTTTTGGCCATACTGGGAGGCATGGCCCTCATCCTGCTCTTCCTCCTCTGTCTTCTGCTCTGTTACTGCAGGAGAAAGTGCTCACGCTCGAGACGAGCTCACCAGAAGTACACTCTCACCTCGTCGCTGGAGAGCTCCAAAAGAGACCAAGCCACGTCCATGTCCCACCTCAACCTCATCAACGAGACCCAACTGGACCATGTGGGGGTGGAACCAGACCTGCACACACCTATGCTGAAAGTCATCGCTCATGACTCCTCCACCAATGAGCTGGTGTCATCTCGGAACGAGCTTGGGAGTCGCTCCCAGCGAGAATATCGCCGCAGCTACACCTCCATCGTCTCGTCAACCGTCCATCCTCTGCAAGCATCTGCTTCATCTTCATCCCCGTATCCGCTGCACCACGCTGCCTCAGCAGGCCGCCTGTCCTCGGAGAGCAAGGCCAGTCCACACGAGCTCCGCCTTTCTCCATCCACGACTTCACCCACAGCTTCACCAGAGAGGGATCTGGGGGTGGAGCATCGTCCATCTGACTTCCTGCTCTCACGCTCAGTGGATCAACTAGAACGCCCTCCAGGCCTTCTGCCCCGCCCAGGAGCACTGCTCTGCTGCACGTCTGAGCTCCAGGTAAGCCAGGGCGGAGCCGGATATCAGAAAGGCCGGCCCACTTTGCTAATCCCTGCCCACTATATGCGGCTACCTGGGACACACCCTCTCTCAGGACAAGCGCTTCTGCTCCAGTCAGATGAGCGGAGCGAGCTCGAGAGCATCCGTGCAGAGCTTAATGCATCCCATCAGCCCCAAGCTGAAGTGGGGCAAGTGGACCACGTGGGCGAAGGGGTGGAGGAGGGCAAAGTAGGATCGAGGGAGGCAGGTGGAGGTACAGTGGATGAGTGGCCGGCAGCACTACCTGAAGCCTTGTCTATCCCCAACTCGCTAAGTGAGGCAACGCTTGGGGTGGTGCAGATGAATGGAGAAGATCAGCTACTGGCTGAGAAGACGCTAATGGAGCTGAGAGGTGGGAAGCCCCTCCCACACCCACGAGCCTGGTTTGTGTCACTGGATGGCCGCTCGAATGCACACATCCGCCATTCCTACATCGATCTGCAGAGGGCAGCACATGGCGCCGGCTCTGTTGGCAGCAACGATGCCAGTCTGGACTCGGGCGTAGACGTGAGTGATATCACACCAGGCCGCAGGGCCAAAGGTCAGGAAAAGGCCCAGGTTATGTCACCCACTGTGGCATGCACATCACTGATATTTGTGGAGGGTACTAAGGCTAATggtaatgctaatgctaatgctcatTCAGAACCCAATGAGAGTGAGAGCCAAACTCCCGCCTGCAGTCCGGAAGAAAACTCGCTCAGGCCCTTGTTGCCCAAAGCTGAGATCGAGGAAGAGACTATAATGCCTTCTTCACCTCCATTGCTACCAACTCCTCCACTCCCGTCCCCTCCTCCGCTCCCAGATCCCACCGTGGAGGAGGAAGACGAGtcaagaggagaaaaagaacagaTAGTGAGGACTGAGCGTGCCCAAACGCACCTTAAGCTTCCCTCAAGCAACAGCGCCCCAGATGGTTTGGCTGCTCCCGAGGACAGCGATGAGAACAAGAAGAGTCCGTGGCAGAAGCGCGAGGAAAGGCCACTGCTTGCCTTTAACCTCAAATGACCCCTGACTTTTGGCCTTTTTACCTGTGGAATTGCCTTTTGGCTGAAGGATTTTGGGTCTGACTTTTACATTACTTGTAAAAGTGAAAAGCTGAAGCAACTGAAATCGATAATCGCTTCCTGGAACTTGCTTGTGTATGAACAAAAAGCATTCTGCTAAACACATTTATGCACAACAGCTATGcctttttaaacaaactgcaaACGAAAGCCATTGTATGAAGGTGAGATGTTTAGCTTTATGAACTGCTGCTGGTGTTCAGGTAAGCAATAGGATCTTCAACTGGCAGCATACAGCACTGAGCGTTGCGTCTTGTCCACAGTAAATGTTTAATCACATGTTCGTCCACTGTGTCCCAGCACTTAGCTGAACAAAATCACTCAGTCATAGATTAGCAAAGTCTTCCTTAAATTAATCTGTGACTGAATGTCGAGTCTGTAAAGATGTTGTGTCCTGTGGTTTCAGTCTCTCCAGCgagtgtttgcttttttttatgcatCAGAGGCGAGTTTTGAATCTTTGGCATCAATCGAATGCAGTATTTCCTCCTTAGTACGATAATCCAGTCAGTGTATCCACTGTAGCATCTGTGAACTTCCTGTTGTGCTTCACACTTGATATTTGAGACACACAGCTATGCATTGCTTTAATTCTGGTTAaaaaatttttcattattattatttgaaagtGTATTATGTGTTTTCATTATTGTATTCACTGTTTTTGATGTTAAACACAATGtaagtgaacattttttttcagcaaaagtagttatttttccttttgcttgtcatacacacaaaatgctctgtctgtctgaagtGCCTATGTAGCAGATGCGTTACAATCCTCAAGCCTCCTTGCAGATTAGATCCTATCACATAtctgctttgtatttttttttttttttttgtatttttggaaaTGTAGTGCATaaaccttgtgtgtgtttgtacgtgTACAGTGTATGAATGATGTGTCTCTCCTGTGAATTTCTCCACCTGTAGAGACCGAGTGCATATTTCAGAGTGTTTTTGCGTGCTTGGGAGTTTGTGTATAAATCAATATGCTACACTTGTTTGCGGTTGTCGCTCCTAGGccaaatgcagtgtgtgtgtttgtgtgtgtatcattgTATGAATATGAAAGCTGGCTGTGATGCCCTTTATAACTGTGACATAACCACTTTGCAATCACTCCCCAACAATCTCCTTTTGAATGTCTGGACTGGTTGCTTATGATATAAATGAGTCCAACTAtccacaattttaaaaatccaattttaattaaagctaCTTATGATTTTGAGAATCAGTGCTAGTATTAAACACCTATTGCAAATGCTTAA

Function

symbol description
fam171a1 Predicted to be involved in regulation of cell shape and stress fiber assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human FAM171A1 (family with sequence similarity 171 member A1).

NR:

description
PREDICTED: protein FAM171A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924452.2 True 4171 mRNA 0.49 8 5260438 5294743

Neighbor

gene id symbol gene type direction distance location
LOC113532775 LOC108256159 coding upstream 1879 5254686 ~ 5258559 (+)
LOC113532776 LOC108256651 coding upstream 5886 5248910 ~ 5254552 (+)
LOC113532629 LOC108256652,LOC108256651 coding upstream 12294 5241135 ~ 5248144 (+)
LOC113532857 NA coding upstream 20266 5236219 ~ 5240172 (+)
LOC113532508 LOC108256086 coding upstream 26389 5228577 ~ 5234049 (+)
nmt2 nmt2,LOC107738873,LOC107681575 coding downstream 3559 5298302 ~ 5307139 (+)
crot crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792 coding downstream 22455 5317198 ~ 5331214 (+)
rundc3b rundc3b,LOC107666772 coding downstream 61439 5356182 ~ 5386626 (+)
dbf4 dbf4 coding downstream 106190 5400933 ~ 5411050 (+)
adam22 adam22,LOC107719137,LOC107714333 coding downstream 121189 5415932 ~ 5492739 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 230648 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 276758 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 335802 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 456379 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 456927 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 246615 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 311127 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 538250 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 547476 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1353537 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 271122 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 330283 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 336757 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 826187 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 865654 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 16466 5311209 ~ 5314614 (+)
G326997 NA other downstream 37525 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1929279 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2606772 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3077942 8372685 ~ 8378896 (+)

Expression


Co-expression Network