ptpn3 (ptpn3,LOC108256378,LOC108443284,LOC107723490)


Basic Information

Item Value
gene id ptpn3
gene name ptpn3,LOC108256378,LOC108443284,LOC107723490
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7971618 ~ 8009770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924475.2
gtgtaagtgtaagtaaCTCTGAGCGCACGCGAGGCAGGTCAGATATCAATGAAtcgagcgcgcgcgcgcgcgccgtGACGACTACACCGACTCCACTCCCGAAGGAAGCCGTAAAAAAACAGACCCAGCGCTTTCCGGAAGTTTACCAACACCTGCGACGACGCTTGTAGAAACATGGAAACAGTTGGCTTTTCGCGGAGGGTGTCGATACAGCACAAAGCAGAGTGAGGAAGCGGACTTCAGACAATACTCAGGTCTGTTTGAGTGTAGAAGATGACTTCGCCATGGTGTACACTTGGAAACAAAATCACCTCTCTGGGTCTGGTTGACCTCTCCAAGCGCACACATATGTCAAACTCTGGCATATCTTGTGTAGTGATATTCCCtgacagcacaacacacactttcacagtcAGTAAACATGATGCTGGGCTTTTGTTATTCGACCTTGCTTTTGAACACCTGGGCATAATAGAGAAGCAGTACTTCGGTCTCCAGATCACTGAAGACACCTCTAGTTCACCTAGGTGGCTGGATCCCAGCAAACCTTTCAAAAAGCAGCTTAAAGGTTCTGCCCCATTCTATTTAATATTTCGAGTGCGATTCTTCATCTCTGACCCTAACTCTCTTCAGCATGAACagaccaggcacttttattttttgcaaattaaGAAAGACATTCGGGAGGGCAGGTTAAAGTGTCCACTAAGCTCTGCTGTGGTGCTGGCATCCTATGCTGTTCAGTCTGAATTTGGAGACCATGTTCCTGAAACCCCTCCTGGATATCTTGGCCATGTCCACTTTATTCCTGATCAGGACAAGGACTTCCTTTTTAAAGTGGAGTCATTGCATCCTCAGCACAAAGGCCTGTCTCAGAGTGAGGCAGAGTTGTGTTATCTGAACACAGCTAGAACCTTAGATCTCTATGGAGTAGAGCTTCATAGTGCACGGGATGCTAGTAACCCATCTCTCTGGGTTGGGATTGCATCAGGAGGTGTGGCTATGTTTTGCAATATGGTTTGTTCCAATTTCTTTCCTTGGATCAATATAATCAAGATTTCATTCAAAAGAAAGAGATTCTTCATCCACCTTCGGCAGAAGCATGGGGAGGTTGGACAACAAGTGGTGTCCCTGTCCATGCCCAGCTCTCGTTCCTGTAAAAACCTTTGGCGATCCTGCGTGGACCATCACACATTCTACAACAGAAAAAACTCTCATGCAGTCTCCAAAACTAGGTCTGTCCCTCTGTATCGGAAACTAGTAGGTGAGGTGATGTGGAATCCTTTAATAAAGTCTCTTTCCACTGAACATCTGGAAACCAAAAGTCTCCCCTCAAGATCTCCGCCCAGTACACCTAACTGGCGCAGCCCTCGTTTGCGTCATGATTTTCGTAAGCCACGTCCATCTTCTGTAGACAATCTTACCAACGACATGAGTTATGTGACTGAGAGTGAAGATGTGTTCTATACTTACAGGAAAGCTCAGGAAGATGAGAAGCCCAGCAGTGTCCAGTCCCCACTTGACGACAACACTTTGGATGAGGAAGACTGGCAAAGTCTCTGGGATAAGGATATGGCAGCTGATGGGGAGCTACTGCTAATCAGAATCAGCCCTGACAAAGATGGCAAGTTTGGATTCAATGTCAAAGGAGGTGTGGATCAGAAGATGCCATTGGCAATCTCTCATGTAAACCCTAATTCTCCGGCTGGTCGCTGTGTGCCTGCATTGCTGGAGGGAGATCAAGTGCTTTTGATAAATGGGCGTGACATTTCAGAGCACACACATCAACAAGTGGTCATGTTCATCAAAGCCAGCAGAGAGTCCCACAGCAAGGAGCTTGCCCTACTTGTACGCAGAAAAGgcaTCTCTTTGCGAGCTGAAAACCCACTACAATTTCCAGGCAGTTTTAACCTACAGGAAGAAATTCCTCCATCTCCTGGTCACCCATCTGGAGAGACACTGCAAGAGTCGATGTCCCGTCTGGAAAGGGGACTGACTTCTGGCACTTTGCTCATGCAATTTGAGAAGTTATACAGGAAGAAAGCAGGACTGTTAACGTCTTGTGCAAAGCTGTCTGAGAACATGGAAAAGAATCGGTACAAAGATGTATTACCGTATGACATCACCAGGGTGGTGTTACAGACGGAGGAGGATAATTACATCAATGCAAGTCATGTGAAGactgaGCCAGCAGGTACCACCTTACAGTATATGGCAGGACAGGGGCCATTGCCCCACACATGTACTCACTTCTGGAGGAGTGTATGGGAGCAGGGAGTCAGTGTGATCATCATGCTGACCACACTGACTGAGAGAGGACGGACCAAATGCCACCAATACTGGCCTCATCCTCCTGAAGTGAAGGACTATGACTACCTTCAAGTGTGCTGTCATTCTGAAGAGTGTAACCTGGCCTATGTCACCAGAGAGCTAACGCTCACACATACTCAgctgggTGAACAGCGCTCCATCACGCACCTACAGTATGTGGCCTGGCCAGATCATGGGGTCCCAGATGAGGCTTCAGACTTCTTGGACTTTGTCCAGGCTGTGAGAAGCAAACGAAGGGACACTGAGCCACTTATGGTCCACTGCAGCGCTGGGATTGGACGGACAGGTGTGCTCATCACCATGGAGACGGCCCTGATCTTGATGGAGGGGGCACAACCAGTGTATCCTCTTGAGATTGTTGCTTCGCTGAGGGAGCAAAGAGCCATGATGGTCCAAACCTCGTGCCAATTCAGCTTTGTATGTCAAGCCATCCTGCATGTGTACCGAGAGAGATTCAAACACAGCCAAACTAGCAGCTGACAGGAGGAGGACAGGAGGAATGGATATGAATATAGATATCATAAAGAGATAAAAGCCAATTGGTTGTTAGGCATGATGGATGATAGGTTGTAAGAGGGAGATTTAACCATCTTCCATCAGATCGTCTGCTTTCACAGGGGCAGAGATAAGGACTGATGCAAAAGAAAAGCAgtaaaaagtaatgaaaaataattaatagaaaTAAGTATAGTAAAGAAAATTTGGGATCAGCTCAAATACACTATTGCATCTAACTGTTGTAGTGCTGCAGCTTCGATTTGCAGGTCACAGTTCCATCTGGATCTGTTGCATCACTGACATGGAATCAGCTCTCTCATTTTGGGGTGGGAggaattttgaaaatgaaattgttttCATAGGGTTTAAAGAATGTAAACTGACATATAAAAGAAATTATACACATCTTTAACAAGATTCAAAGTTTTAGTCCACTAGTTAAAGATAAGTATGCAGTAGTACTGCATAGGAGTCATCCAAGCACTTACTGACACTGATGCACTGCCATGCTGCTAATAACCAAACATTCCTCTCCACAAAATTTTACAGTCAAGAGACCAAAAACACAAGACTAATGGTGCTTTCAGAACTGtgtcttcattcattcattcattcattgattcattcactcATATTCTGTAACTGCATCATCCTGGTCGCAGTGTCGCAGGGGATCTGGAGCCTCTCGTGGGAACACTGTGCATGAGGTGGATGAGGTGCTTGTCCATCACTATACACATACGTTCACCCTTAAGGCAGTTTAGCCTAATCCATCCACCTTCTGGGAGGAGGGAAGAAACCGGacaacctggaggaaaccatgGACACAGGGAAAAGCTGCACCGAAACTTGTGTGGATCTTAAGAAGACAAAAAGCACTTTGCCACTTTTAGATCTGTATAATTCTATagaatacacacaaatacacagtctAAATAGAAATACTACTACAACAATCAATTATCgatttattaataaagaaagaaataaaatgtga

Function

symbol description
ptpn3 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and cytoplasmic side of plasma membrane. Is expressed in liver. Orthologous to human PTPN3 (protein tyrosine phosphatase non-receptor type 3).

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 3 isoform X1

GO: NA

KEGG:

id description
K18027 PTPN3, PTPH1; tyrosine-protein phosphatase non-receptor type 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924475.2 True 3826 mRNA 0.45 26 7971618 8009770

Neighbor

gene id symbol gene type direction distance location
epb41b NA coding upstream 47365 7905872 ~ 7924253 (+)
trim35-28 LOC108256499 coding upstream 74309 7890628 ~ 7897309 (+)
ino80c ino80c coding upstream 387787 7578989 ~ 7583831 (+)
tmem245 tmem245,LOC107706205,LOC107687814,LOC107723436,LOC107595951 coding upstream 520431 7426279 ~ 7451187 (+)
LOC113532919 frrs1l,LOC107595962 coding upstream 547427 7417374 ~ 7424191 (+)
epb41l4b epb41l4b,LOC108256379,LOC101068824 coding downstream 131 8009901 ~ 8045225 (+)
virma kiaa1429,LOC107687804,LOC107595823 coding downstream 62697 8072467 ~ 8095509 (+)
rad54b rad54b coding downstream 101643 8111413 ~ 8133575 (+)
LOC113533047 fsbp,LOC107593680,LOC107723453,LOC107687811,LOC105897825 coding downstream 105780 8115550 ~ 8120900 (+)
cdh17 LOC108256708 coding downstream 130312 8140082 ~ 8156293 (+)
G328620 NA non-coding upstream 312539 7657141 ~ 7659079 (+)
G328441 NA non-coding upstream 579170 7392241 ~ 7392448 (+)
G328427 NA non-coding upstream 598118 7373280 ~ 7373500 (+)
G328313 NA non-coding upstream 702856 7267734 ~ 7268762 (+)
G328260 NA non-coding upstream 834896 7128166 ~ 7136722 (+)
G328750 NA non-coding downstream 95492 8105262 ~ 8105462 (+)
G328754 NA non-coding downstream 125310 8135080 ~ 8135455 (+)
G328755 NA non-coding downstream 125747 8135517 ~ 8136163 (+)
G328944 NA non-coding downstream 206676 8216446 ~ 8216654 (+)
G328995 pigm non-coding downstream 247755 8257525 ~ 8264036 (+)
LOC113532663 NA other upstream 69010 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 724339 7224022 ~ 7247279 (+)
G326997 NA other upstream 2633367 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2657004 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 2982302 4984415 ~ 4989316 (+)
osr2 osr2,LOC106591507 other downstream 362915 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 378417 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 605303 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 758975 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 841634 8851404 ~ 8922793 (+)

Expression


Co-expression Network