epb41l4b (epb41l4b,LOC108256379,LOC101068824)


Basic Information

Item Value
gene id epb41l4b
gene name epb41l4b,LOC108256379,LOC101068824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8009901 ~ 8045225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924476.2
TCTTTGTAATGTGTCTGAAGCGAGTTTCGTAGCCCAGGTACCGCTGAGGATTGCGCAATGCCAGACATCTCACAACCAGCAGGTAGCGCTGCCTCGCGCGCTCGCAGGAAAAAAAGTTTGAGTATTTCTCCGTGATTCGAGCATGCGCAGTAAAAGCTGCCTGGCCAGTTTCTCTGGATTACTTACCTGGAAGGTGCATCAGTTTCGGTCAGTAGAGAAAGCGGTAAAAATACCGCGAGCGGAAAAATTACAAGAAAAATACAAGCTGGTCTCAGCCACGAGGCGAAACGAAACCGCAGCCACAGTAACCGAGGTTTCAGGCGCTTAGTCTctttattgaaataaacattacgCAGTGGGGAGACACTGAAAACGTCTGAGCAGCTCCGAGgcaggagtgtgtgcatgtgtgtgtgtgttcgttctcCCCACGATTGGCCGTCCTGCGTGACAAGTCCTCTACAGGTCTGCGTCGTAGCAGATCTCTCCAGTGTCGCCAGACTTGTGTGATCGTGATCTCCATAATCATCTGGCAAAACAGCTGGAGCTCGTTTTCTGTCGGAGCGCGTACACGGACCTCGCACGTCACTTTCCGCGGTTCGCCGCGTCGCTTTGCCCGCTTTCTCTTTCACTTGAAAGATGATGGGCTTTCTGCGCAGGACGTTCAGCCTCCGCTCGCGGAGACGCTTTCGGCCGTCCGATGAGCTCGACGGTGGCGGTCGAGGCGTAAACCAGGCGCTTCAGGcgctccagcagcagcagcagatgcCCGCTCCCGCCGTGGTGACCGGAGGCACTGTGGTGCACATCCCCGCCGCGGGCAACAGCAAAGCGGCCATCACGTGCAGAGTTCTGCTGTTAGACGGCTCGGATGTCAGCGTTGAGTTACCGAAAAATGCAAGGGGGCAGGACCTGTTTGATCAAATCATGTATCATTTGGATCTTGTGGAGGCTGATTATTTTGGACTGCAGTTCATGGACCCGGAGCAGGTTGCGcactGGCTGGATGCCGGCAAACCCATAAAAAAGCAGATTAGATatgGCCCACCATAcaggctgtttttcagggtgaAGTTCTACTCCTCAGAACCCAATAACCTTCATGAGGAGTTCACGAGGTACCTCTTTGTGCTGCAGCTCAGACAAGACATTCTGTCTGGCAAATTAAAGTGTCCATATGATGTATCTGTGGATCTTGGGGCTTATTGCCTACAGAGTGAGTTGGGAGATTGCGACCCATTGGAACACACTCCGCTGTTGGTGTCAGAGTTCCGTTTCTCACCTAACCAGACAGAGATCATGGAGGCGGACATTTACCGCAAATGGGCCGATTGCAGGGGAATGAGTCCATCACAAGCAGAGCTGAGCTTTCTAAATAAGTGTAAGTGGCTGGAGATGTATGGAGTCGACATGCACTTTGTGAAGGGTCGTGATGGAGGAGAATATGCTCTGGGTCTTACCCCAACAGGAATTCTGGTGTTTGAAAGATCCAACAAAATTGGCCTCTTCTTTTGGCCCAAAATCACACGTCTGGACTTCAAGAAGAACAGGCTGACGCTAATGGTGGTGGAAGATGATGAACAGCGTCGTGAGCAGGAGCACACATTCGTGTTTCAGCTCTCCAGCTCAGCAGTGTGTAAGCAGCTGTGGAAGTGTGCCGTCGAGAGCCATGCGTTCTTCCGCCTCAGACAGCCAGCCCAGAACAAAGCAAGTCGCAATGACTTCACACGCCTTGGCTCACGCTTCCGCTTCAGTGGAAGGACCGAGTATCAAGCTACTCACTCAGGCAGGATCAGGAGGGCAAGCACTTTCGAGAGACGACCGAGCAAAAGATATCCATCCCGAACCCAATCACTAGGCAAAGCCATTACTCCAGCAAAACATCACCATCCAAGTGCCCAGCCTAGTCCTGATCCCAGCTTAAAACCGTATCAGCACAACATTCCGATTGGTCAGGAGCCTTGGTCCAGGACACACCCACCCAGTTTGACTCCACCCCTTTATATCCAGCCCAGTGAAATGGGACACAATCCACCTCACAGTTTCCCACTGAGCAGTGCAGATACCCAAAGGTTCAGTATGGAGGAGAATGAGACTCTGCTTTCTGCAACACTCCACTACTGCTATCGTTGGCATGGATATGAGAAACAGGAAGTCCCATGCCTCACTTTAACCAAGCCTAAGCCATGGGATGTTCCAGCAGGACACACAGAAAATCTCGACCGAACTTTGCGGAGTCCGAAACAGTTACAGCCAGATACAATACCCTGGCCGACACTTCACATCAACATTGATACAGCAGAAGAAAAACTACTGTCGGAGAAAAGTCTCCCTTCTTCTCCGGTTGGCATACAGGATCAGCGCAAGAGCAATATTCTCAGACACGTGATGCACAGTGAGAGTGCAAATTCAAAGGGGAATTGTTCCAGTGGAGAGCAGaacaacaggtgtgtAATCCCCAGCTCCTCTCAGGATTCAGCCTCCAGCAGCGTGACCACGGAAAGGCCGCGGGTGGAACGCCGCAAACGCCTTGTTAGGCAGTTCAGCTTTAACCACAGTGATGAAGATGACCTCCCAGACGCGCTCGCGGCCATATCTTCTCAGAGCAACATGAGAAAATCCACATCTAACAGCTCACTGGACAAACAGGTCCAACCACCAATCTACCCCCCGAAAAAAGTCTCACCATTGGAGCACAGCAACAAATCTCCATTCTATCCAGGcaATGAAGACCCGAGAATGGATAGAGAAAAACTGCTGAGAGCATTACTAATGACAGAACTCTGAGtccatgcacacattcatacatacgCATAATCAGTTGCGCTGTAGTAATTTTCTACATTTACGTGATATTAAGTCTATTTTTAATTGTAAAGCTTATCACTCGTACAGCACACGTGCAAATTCATGCTTCTGAAAATGTCCAGTATTATGTTATTTGAAACCATGTTTATTTGCCGCACTTCC
>XM_026924477.2
ATGATGGGCTTTCTGCGCAGGACGTTCAGCCTCCGCTCGCGGAGACGCTTTCGGCCGTCCGATGAGCTCGACGGTGGCGGTCGAGGCGTAAACCAGGCGCTTCAGGcgctccagcagcagcagcagatgcCCGCTCCCGCCGTGGTGACCGGAGGCACTGTGGTGCACATCCCCGCCGCGGGCAACAGCAAAGCGGCCATCACGTGCAGAGTTCTGCTGTTAGACGGCTCGGATGTCAGCGTTGAGTTACCGAAAAATGCAAGGGGGCAGGACCTGTTTGATCAAATCATGTATCATTTGGATCTTGTGGAGGCTGATTATTTTGGACTGCAGTTCATGGACCCGGAGCAGGTTGCGcactGGCTGGATGCCGGCAAACCCATAAAAAAGCAGATTAGATatgGCCCACCATAcaggctgtttttcagggtgaAGTTCTACTCCTCAGAACCCAATAACCTTCATGAGGAGTTCACGAGGTACCTCTTTGTGCTGCAGCTCAGACAAGACATTCTGTCTGGCAAATTAAAGTGTCCATATGATGTATCTGTGGATCTTGGGGCTTATTGCCTACAGAGTGAGTTGGGAGATTGCGACCCATTGGAACACACTCCGCTGTTGGTGTCAGAGTTCCGTTTCTCACCTAACCAGACAGAGATCATGGAGGCGGACATTTACCGCAAATGGGCCGATTGCAGGGGAATGAGTCCATCACAAGCAGAGCTGAGCTTTCTAAATAAGTGTAAGTGGCTGGAGATGTATGGAGTCGACATGCACTTTGTGAAGGGTCGTGATGGAGGAGAATATGCTCTGGGTCTTACCCCAACAGGAATTCTGGTGTTTGAAAGATCCAACAAAATTGGCCTCTTCTTTTGGCCCAAAATCACACGTCTGGACTTCAAGAAGAACAGGCTGACGCTAATGGTGGTGGAAGATGATGAACAGCGTCGTGAGCAGGAGCACACATTCGTGTTTCAGCTCTCCAGCTCAGCAGTGTGTAAGCAGCTGTGGAAGTGTGCCGTCGAGAGCCATGCGTTCTTCCGCCTCAGACAGCCAGCCCAGAACAAAGCAAGTCGCAATGACTTCACACGCCTTGGCTCACGCTTCCGCTTCAGTGGAAGGACCGAGTATCAAGCTACTCACTCAGGCAGGATCAGGAGGGCAAGCACTTTCGAGAGACGACCGAGCAAAAGATATCCATCCCGAACCCAATCACTAGGCAAAGCCATTACTCCAGCAAAACATCACCATCCAAGTGCCCAGCCTAGTCCTGATCCCAGCTTAAAACCGTATCAGCACAACATTCCGATTGGTCAGGAGCCTTGGTCCAGGACACACCCACCCAGTTTGACTCCACCCCTTTATATCCAGCCCAGTGAAATGGGACACAATCCACCTCACAGTTTCCCACTGAGCAGTGCAGATACCCAAAGGTTCAGTATGGAGGAGAATGAGACTCTGCTTTCTGCAACACTCCACTACTGCTATCGTTGGCATGGATATGAGAAACAGGAAGTCCCATGCCTCACTTTAACCAAGCCTAAGCCATGGGATGTTCCAGCAGGACACACAGAAAATCTCGACCGAACTTTGCGGAGTCCGAAACAGTTACAGCCAGATACAATACCCTGGCCGACACTTCACATCAACATTGATACAGCAGAAGAAAAACTACTGTCGGAGAAAAGTCTCCCTTCTTCTCCGGTTGGCATACAGGATCAGCGCAAGAGCAATATTCTCAGACACGTGATGCACAGTGAGAGTGCAAATTCAAAGGGGAATTGTTCCAGTGGAGAGCAGaacaacagAATCCCCAGCTCCTCTCAGGATTCAGCCTCCAGCAGCGTGACCACGGAAAGGCCGCGGGTGGAACGCCGCAAACGCCTTGTTAGGCAGTTCAGCTTTAACCACAGTGATGAAGATGACCTCCCAGACGCGCTCGCGGCCATATCTTCTCAGAGCAACATGAGAAAATCCACATCTAACAGCTCACTGGACAAACAGGTCCAACCACCAATCTACCCCCCGAAAAAAGTCTCACCATTGGAGCACAGCAACAAATCTCCATTCTATCCAGGcaATGAAGACCCGAGAATGGATAGAGAAAAACTGCTGAGAGCATTACTAATGACAGAACTCTGAGtccatgcacacattcatacatacgCATAATCAGTTGCGCTGTAGTAATTTTCTACATTTACGTGATATTAAGTCTATTTTTAATTGTAAAGCTTATCACTCGTACAGCACACGTGCAAATTCATGCTTCTGAAAATGTCCAGTATTATGTTATTTGAAACCATGTTTATTTGCCGCACTTCC

Function

symbol description
epb41l4b Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human EPB41L4B (erythrocyte membrane protein band 4.1 like 4B).

NR:

description
band 4.1-like protein 4B

GO: NA

KEGG:

id description
K21111 EPB41L4B, EHM2, LULU2; band 4.1-like protein 4B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924476.2 True 2970 mRNA 0.50 23 8009901 8045225
XM_026924477.2 False 2325 mRNA 0.50 23 8010540 8045225

Neighbor

gene id symbol gene type direction distance location
ptpn3 ptpn3,LOC108256378,LOC108443284,LOC107723490 coding upstream 131 7971618 ~ 8009770 (+)
epb41b NA coding upstream 85648 7905872 ~ 7924253 (+)
trim35-28 LOC108256499 coding upstream 112592 7890628 ~ 7897309 (+)
ino80c ino80c coding upstream 426070 7578989 ~ 7583831 (+)
tmem245 tmem245,LOC107706205,LOC107687814,LOC107723436,LOC107595951 coding upstream 558714 7426279 ~ 7451187 (+)
virma kiaa1429,LOC107687804,LOC107595823 coding downstream 27242 8072467 ~ 8095509 (+)
rad54b rad54b coding downstream 66188 8111413 ~ 8133575 (+)
LOC113533047 fsbp,LOC107593680,LOC107723453,LOC107687811,LOC105897825 coding downstream 70325 8115550 ~ 8120900 (+)
cdh17 LOC108256708 coding downstream 94857 8140082 ~ 8156293 (+)
LOC113532572 LOC108256701 coding downstream 138867 8184092 ~ 8190259 (+)
G328620 NA non-coding upstream 350822 7657141 ~ 7659079 (+)
G328441 NA non-coding upstream 617453 7392241 ~ 7392448 (+)
G328427 NA non-coding upstream 636401 7373280 ~ 7373500 (+)
G328313 NA non-coding upstream 741139 7267734 ~ 7268762 (+)
G328260 NA non-coding upstream 873179 7128166 ~ 7136722 (+)
G328750 NA non-coding downstream 60037 8105262 ~ 8105462 (+)
G328754 NA non-coding downstream 89855 8135080 ~ 8135455 (+)
G328755 NA non-coding downstream 90292 8135517 ~ 8136163 (+)
G328944 NA non-coding downstream 171221 8216446 ~ 8216654 (+)
G328995 pigm non-coding downstream 212300 8257525 ~ 8264036 (+)
LOC113532663 NA other upstream 107293 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 762622 7224022 ~ 7247279 (+)
G326997 NA other upstream 2671650 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2695287 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 3020585 4984415 ~ 4989316 (+)
osr2 osr2,LOC106591507 other downstream 327460 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 342962 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 569848 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 723520 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 806179 8851404 ~ 8922793 (+)

Expression


Co-expression Network