nr1d2a (nr1d2,LOC108256654,LOC105891902,LOC107743928,LOC107565234,LOC107700655)


Basic Information

Item Value
gene id nr1d2a
gene name nr1d2,LOC108256654,LOC105891902,LOC107743928,LOC107565234,LOC107700655
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3881971 ~ 3891903 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924488.2
GCGCGCGGTCGGAGTGGGGGGGCGGAGAAATGGCCCCATAGCAACAAACCTCAGAACATTCAGTTCTTAGCAGCAGTCACTTGCCGATGTGCAGGACCTACAGCCACTGTACACTAACAATACTCCATATGAGAAGCGGGttttttctcacattattattattttttggatgATTTGGTAGCAGGGAGGTTCCTGAGGAGATTCCCGGATATCTTTGGAGCGACATGAGCTGTCTCTGTTCACTGCTACAAGTCTGAGGACTATTTTCTGGACGGTATTTAGCTtgttagctggttagctaaCCAATCATACAAGGTTAGCACCTTATAACAGTTTCAGGTTGGACTTGGGAAGCTGTTTAAGACGAAAATGGGATCAACAAAACCAGCTGGTGTGATAGCGTACATCTGCTCTTCCGGTTCTGCCTCCAGCCCCAAATCCTGCTTGAGTGACAGCTCCAGTGTCCACTCACAGTCGTCATCCCCGCCCCCTTCAACAGCACAGAGCTTGAAGATGGAAATGCCCAGCGCCAGGCCTCTCGGCGTCCCTAAACCCACCCACTCTCGCATGCCTGTGTCGGAGAAGAGCGCAACCAAGAGCAGCATCACGAagCTGAACGGCATGGTGCTGCTGTGTAAAGTGTGTGGCGACGTGGCTTCAGGATTTCATTACGGCGTTCACGCTTGTGAAGGTTGCAAGGGCTTTTTCCGGAGGAGCATCCAGCAGAATATCCAGTATAAGAAGTGCATGAAGTCGGAGAACTGCACCATCATGCGCATAAACCGAAACCGCTGCCAGCAGTGCCGATTCAAGAAGTGCCTCGCGGTGGGAATGTCACGGGACGCTGTGCGGTTTGGACGCATCCCGAAGCGGGAGAAGCAGCGCATGCTCCTGGAAATGCAGAATGCCATGAACAGCGTGATGACCGGCGCCCAGCTGCACCAAGTGCTCCGAGACTCCAGCTCCTGCTCTCCCtcgtcttcctcttcctctccctcgCCCCCGTCCTCACCGCAGTGCTCTCAGGACTCAGAGTCACTAGTGCCCATGGACACTATGAGCTTGGCCTCGTCCTGTTCCTCAGACAGCGGGGAGGAGGATTCGGCACCTCGGCCTGATGGATTTCATCTTGCacaatcagGGGGCGCCCTTTCACTGGGCCTCTCAGAACGACTGAGCAACAGCAATGTGACAAACATCCACAACTCTCCCTGTGAAAGTCGGCAGCAAATCACTATCAGGTACCACAGCAGTGCTCAGCCTGATAACGCCTCATACTGCCACTACAGCAGACCCAATCTGAACGAGCTCGCTGGAATATCAGCCAGCCGAAGGCACCTGGTGTGTCCCATGAACACTTCACCCATAGTGGACCCGTCCAAGTCCAGCCATGAGATCTGGGAGGAGTTCTCCATGAGCTTCACGCCTGCTGTGCGAGAGGTGGTGGAGTTTGCCAGGCAGATTCCGGGCTTTCGCGAGCTCTCGCAGCACGACCAGGTCAGCCTGCTCAAGGCTGGAACATTCGAGGTGCTGATGGTGCGCTTCTCCTCGCTGTTCGACGTGAAGCAGCGCACGGTGAGCTTCctgagtgggcggagctacagCGTGGAGGCTCTGCGCTCCATGGGTGCGGGAGAACTGCTCTCGTCCATGTTCGACTTCAGTGAGAAGCTCATGGCGCTGCAGCTCAGCCCCGAGGAGATAAGCCTCTTCACCGCACTCGTGCTCGTCTCTGCTGACCGCACCGGGATCGAGGACATGAGCTCGGTGGAGGCTCTGCAGGAGAACTTGATCAGAGCTTTGAGGAACCTGATCATGAAGAACCACTCGAACGAGGCGGCCGTCTTCACCAAGCTGCTGCTGAAGCTACCGGAGCTTCGTTCCCTCAATAACATGCACTCGGAGGAGCTGCTCTCCTTCAAGGTCCACCCTTAAAACAGACCTGCTCTCCTCTCTCGGACCAAACCGGGCTGTATGTTTCCCTCCTGAATGTATTTAACACAaaagatttattattactattattattattgctatgattattactactactacgtCAAAAGGGTTTAGGAACTGTGGAAGTCCAGAGAAGaggtgtattttattttatatttttaaatctgtccCATTATCttgagtttacacacacacatatacatagcCTAAAGTATAAGATAaatgggttgccagattggggtGACTTTTAAATTCAGTCACAGTTTAAACACCTTCCAGCTTCTTGCACTTAcatataatgttagctagcataatGTCTCAGTTATGGCATAGCTAGGATGAAATTGGATGAACAGGGATTCTGTAAAAGCTATTATAGCTATAATAGCTAATAGGGAAATTATTTAGGTCTTTAGACGTTGTCGCTTGACCATCTTCAGCAGTGACCAGCCTCTCGTTCGTTATCTCCTTATATGACTGATAAATACcttattctgattggtcggaaggtgttgattaattttctataacagcagctctgagagtagttccGGTTGTAACTGAAAtagaaggtttatattaatgcgtcgttctaatattttatcgtttctatgtctgaagagaggctggtgagggaatgactgtttatagctgctataacgtaactgataacaggaagtaacttgtttcatggacataccacaacattaaatgcaactataaatggataaaaagtgtcattctttaatagaaATGTATCTATTCTTTGGTAAATTGCTGAAGGatcaagaggagtaaaacacttcagggtgtgctgttataggaaaataatcaactttagggtgggAACAGTAatccattgttgattattttcctataatatgTCCGtaagtgttgtattccttacaacaaggacagaaaaaaaaacaatactgcgTCTCAGCTCTGGACTTCTGTAAGGAACGGaatgctgtatttttgtgtacgtatataatatatacagtatataccatGTCTAAAGTCTGAATTGCACACGTTGTGGTATTGATGATGTGGACAGCacaggtgagacagagacagagatcaCTGCTGTAATCTTCCCGAGCGTGTCGAGTCGTGACCGTCCAGGTCCTGCGCTTGCTTCTCTGCACTATTCTTTGCACACTTGACAAAAGGACGGAATTGTATCAAAGGTTCTGAAACGTGCAATAGGTGCTAATGCATGATTATGTGTGTTTGAATAGTTTAGTGTGGCATCCTGTCCAAAATGTTATCTTTTAAAATGTCCtacttatttgtttttgtttggccttcatcatcatcctaaatcatcgtcgtcatcatcattgtttgtgtgtaaaatgtcttttgtattttattcatgaATGTATAACATTAGCCAGGCTGCACGTTAGGCGCCGCTTTTAAAATGGAAACTCGCTGCTTTTGCACACGGTGACGCGGAACAGAACTGAAGCACACGCAGCGTGTAAATGCTCTATATGCAAGTCTATGCATAACCATGACACCACAGCAGTATGACGCTTTGGAGTCCATCTTCCATCACGAAAACATCACTGGAGAAATGTTTTCTACCTGCGTGAATGTATATCAAGAACAGAAGGACCTATGGACTTGATAAGAAGCGTATACggatggctgtgtgtgtgtgttctttacaGATGATTCTGAAGATTCTGATATAAGAGATTAAGTGGAAATCTGATTTCCGGGGGCCGCCCCACACCTCCTCTCCTCATCACTATGCAGCTCGACAGTGCGGACTTTTCATACTTAAACCATGGTAAAGAAGCTctatatatgtaatgtaatgtaatgttatattCTTTATGTCCACATTGTGCTGTTGTGTAagatatctatctatatatagtatataaataaat

Function

symbol description
nr1d2 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleoplasm.

NR:

description
nuclear receptor subfamily 1 group D member 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924488.2 True 3863 mRNA 0.46 9 3881971 3891903

Neighbor

gene id symbol gene type direction distance location
ube2e2 ube2e2,LOC108256709,LOC100705137,LOC105021876,LOC106582102,LOC106605266,LOC103388353 coding upstream 3447 3849062 ~ 3878524 (+)
rab5ab rab5a,LOC103038585,LOC108249324 coding upstream 159202 3714016 ~ 3722769 (+)
LOC113532711 plcl2,LOC107688208,LOC107671457,LOC107592112,LOC100334276,LOC100701990,LOC102309498,LOC101482776 coding upstream 411759 3425575 ~ 3470212 (+)
LOC113532798 LOC108256747 coding upstream 458977 3365121 ~ 3422994 (+)
LOC113532606 LOC108256085 coding upstream 571153 3305106 ~ 3310818 (+)
LOC113532591 NA coding downstream 25512 3917415 ~ 3935176 (+)
LOC113532598 LOC108256467 coding downstream 43659 3935562 ~ 3940027 (+)
LOC113532597 LOC108256466 coding downstream 48482 3940385 ~ 3945230 (+)
LOC113532613 usf2 coding downstream 88525 3980428 ~ 4002436 (+)
iglon5 iglon5,zgc:110372,LOC107707642,LOC107671460,LOC107733024,LOC106582734 coding downstream 178153 4070056 ~ 4206519 (+)
G326131 NA non-coding upstream 1030 3880677 ~ 3880941 (+)
G326023 NA non-coding upstream 179818 3701334 ~ 3702153 (+)
G325815 NA non-coding upstream 559641 3319917 ~ 3322330 (+)
G325754 LOC108256342 non-coding upstream 621790 3258929 ~ 3260181 (+)
G325730 NA non-coding upstream 673009 3139312 ~ 3208962 (+)
G326178 NA non-coding downstream 53479 3945382 ~ 3946133 (+)
G326193 NA non-coding downstream 75629 3967532 ~ 3973002 (+)
G326288 NA non-coding downstream 427312 4319215 ~ 4359118 (+)
G326281 NA non-coding downstream 456878 4348781 ~ 4351847 (+)
LOC117595758 NA non-coding downstream 574605 4466508 ~ 4468850 (+)
G325435 NA other upstream 1312232 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 1666561 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 1737446 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 1962261 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 2718357 1118268 ~ 1163614 (+)
hamp NA other downstream 119477 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 499617 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 506756 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 1029077 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 1032878 4924781 ~ 4930155 (+)

Expression


Co-expression Network