itga8 (itga8,LOC107681583,LOC107689880)


Basic Information

Item Value
gene id itga8
gene name itga8,LOC107681583,LOC107689880
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6394584 ~ 6494806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924493.2
ACGTTATAATGGTGTGTGCGCGGACAGCgcgagctcacacacacacgtccccATCCACAGTCCGGCGGGAAAGGCGCGCGCGCAGCTGAATGAAACGGAGCGCATGGAGCACGCGCACGGACTCTGACAGCCGAACTTGTGAAGATAACGGCACGAGCCGCGGAAACTGCATTCGCTTATTGGTTACGAAGAATAATTTGTGTTTGACACCAGGAGTGCAGCGATGCTGGCGCGTGGGGCTCGAGCGTCCTTCCATGAGCTTTCTTGTCTAATCTCGGTTAGTCTAATCTTGTCTGATTTTCTTTGCGGAATCGTTGCTTTCAACTTGGATTTGGAAAAGCCCGCTGTGTACAGTGGACCCACCGGGAGCTACTTTGGATACTCCGTGGACTTTTACCACCCGACGCAGGACAGGAGCGCtgTGTCAGTGCTGGTCGGGGCTCCCAAAGCCAACACCACCCAGCCCGGGATTGTGGAGGGCGGTGCGGTTTATTACTGCTCCTGGCCCCCGTCTGAGCAGAACTCATGCCGCGAGATCCCTTTCGATAAAGCAAATAACAGGATGGTTAAAGTGAATGGGACACGGGAGTCGTtggagttcaaatcccaccagTGGTTTGGAGCTACTGTCCGAACACACAGGGGTAAAGTAGTGGCCTGTGCGCCTCTGTATCATTGGCGAACAGTGAAGATCAGCGGTGAGATGGATCCAGTGGGCACGTGCTATGTTGCTGTGCAGAACTTCAGTGCCTATGCAGAGTACTCTCCTTGCAGAACAaATAATCCAGACCCTGAAGGACAGGGCTTCTGTCAGGCCGGCTTCAGCGTGGACTTCACTAAGGACGGGACATTAGTACTAGGAGGACCAGGGAGCTTCTACTGGCAAGgtcaaGTCATCACTGCAGGAGTAGCGGAAATCTTGAATGGCTACTCTTTGAAGGCAATACTCCGGAAGGTGcagggagagaaacagacagcAGCCGCTTCAGACGTCTATGATGACAGCTACCTGGGATACTCTGTAGCTGTGGGAGAGTTCACCGGTGATTCACAGCAAGAGTTGGTAGCAGGAGTTCCACGAGGAGCGCAGAACTTCGGTTATGTTGCTGTGATAAACTCCACAAATCTCACCCTCATTCAGAATTTTACTGGAGAGCAGatgGCTTCATATTTTGGATACACTGTGGCAGTGACAGACATTAATGGAGACGGGTTGGATGATGTTCTGGTCGGAGCTCCTCTGTATATGGATCGGGAGTTTGAGAGTAAGCCACGAGAGGTGGGCCGGGTTTACCTCTACCTACAGGAGGACACACTCCTCTTCTCACCTCCCATAACACTCACCGGTATACACCTGTTCGGACGCTACGGTAGCGCCATCGCTCCTCTTGGAGACATCAATCAGGATGGTTACCTGGATGTGGCAGTGGGAGCTCCGTTTGCAGGCGAGGACCGCAGCGGTTGTGTGTTTATCTATAACGGTGAGAGGTCTGGCTTGAGGCTGAAGCCCTCACAGGTGCTCAAAGGATCCTGGGCTACGACTGGTATCCCAGCAGGCTTTGGGTTTACGCTGCGTGGGGACTCAGATCTGGACAACAACCAGTACCCTGATCTAATTGTTGGTGCTTTTGGAGCTGACAAAGTGGTGGTGTAcagAGCAAGACCTGTGATTACAGTGGACGCTCAGCTCATCCTAACTCCCAAAATCCTCAACCCGGAGAACAAGACCTGCCTCATGCCCAACTCGAATATCATGGTTCCCTGCCTGAGAGTGGACGTCTGCGCTAAAGTCTCTGGTACTGGAATCCCAGACGTCGTTGTTCTGAACATGGAGCTGCAGTTGGACTCGCTAAAGCAGCGAGGCGCTGTGAAGCGGGTTATGTTCCTCGACTCACATCAGCACCACCGCTCGCTGCAGATGTTTCTGGGCCAGCGAGAACGGCAACAATGTCTCAACCACACCATCTACCTGCGGGATGAGACTGAATTTAGAGATAAGCTGAGTCCTATCAGTGTAGCTCTGAACTACAGTCTGGATCAGACGTCTCCTTTATCTGGCCTCCAGCTACGACCCATACTGGACCATTACAGCATGACCTTGCACcatgaacagGCAAACATCTTGTTGGACTGTGGAGAGGACAACATGTGTGTCCCAGATCTTGAGCTCACTGCTAAAATGGACCGGACAGAGCTGGCGATTGGTGATGAAAACCCACTGTTGCTTACCATCATGGCAGCCAACCATGGCGAAGGCGCGTATGAGGCAGAGCTTGTGGTGCGTCTCCCACCAGAGGCAGACTACAATGGCATGGAGCGCCGACGGGAGGACCTACAGATTCTGAATTGTGAGCACAGGATGGAAAATGAAACCCAGTTGGTTGTGTGTGAATTAGGAAACCCAATGGTGGCTGGAGCAAATGTGTCTATTGGTTTGCGATTCTCCGTCCAGAGGTTAGAAGACGCTGAAGCTCAAATTGGCTTTGAGCTGCAGATACACAGCACCAATAAAGATAACCCGAAGAGTAACCCTGTGAATTTAACTCTCAACATCGTCGCACGAGCGGAGGTGGACATCAGAGGTGTCTCTCTCCCAGCTCAAGTAGTTCTTCCTTTTCCTCACTGGGAGCCCAAAGAGAACCCAGTCAGAGAGGATGATATTGGGCCTCAGATCCAGCATATCTAcgagctgTATAATAAAGGTCCAAGTTCTGTGAGTGGCACAATTTTGGAGGTAGGATGGCCCAGTCGTCATCGAGAAGAGCATTTGCTGTATGCCATGGAGATCATCACTGATGGACCGATTCACTGCCACATCAACGGCTCGCTTAACCCACTAGACCTtgagacgtCCACTTTGCAAGACACTCCAGAGCTGCTGGGTTTTCTGCGCAACAGCAGCGGGCCGACACGTCGCAGGAGATCTGTTACCACTACACAGAGCTACAGCAGCAAAACActgaattgCTCTAATATCCATTGCCTGATGCTTGAGTGCATTGTGGGTCGTTTGGATCAAGGACAGAGTGCAGTGGTCAAAGTCCGGTCAAGGCTCTGGGCTCACACCTTtctacagAGGCGGAATGACCACTACCTCGTCAACTCTACCGTGTACTTCAGAGTAACAGGCATGCCGTACCGCATCAAACCACATACCCTGCCACAGCAGAGTAACTCGatcggTACGTATGTGGTATGGGCAATTCCTGATCTGTCCTTTGCCATTCCTCTATGGGTGATTATTCTGGCCATCCTACTGGGACTGCTGGTGCTCGCCTTTCTAACCTTGGTTATGTGGAAGTGTGGGTTTTTTGATCGAGCACGACCACCGAAAGATGACGACGTCTCGGACCGGGAGCAGCTGACAGCCGAGAAATCGACAGAAGCgtaaaagagagaagagggaaaACAAGAATGTGGAAGAAATATCCATGAAGACGGTGAATGATCTTTGATAGAGGGATTTGGGGCATGTCAAGAGCGCCTGAACTAGCGATCCGACCCTCTCTCCCATGCTGCACTGGGATCTGTGACCTGGGTCACACTGTTCATGGAAAACTTTATTCGAATCAGGCAGCAGCGTGGGTTTCTGGATATGAGGTGCCTTTTCTCGGATCCCTCTAGGGCTGTGAAAAGAGAACCAACAGTTAAGGACAGCAAGAGAGAAATCCTGATTTTTTGCGTCATAAACACTAAAGACAATCATCACACACCCTGAGACTGAAGGATGCACGCTGGGAAAACAGGATTTCTCTTAAAAGCACAGCTCACTTTGCCTTAAAGAACTGTAACACTGCTGAGAGTTTCTATGAGCTGTAAGATGAGCTTTTCCAAACCTTATTTTCAACTGATTTTGCAGATCTTAAAATCTTCTGTGTGCCTATAgcccccgacacacacacacacacacacacacattactcctgtaaatgaaaaacacagcATCCAAATAAGAACACTGAATACCATGGAATATTGACTAGGACATTTTTGGGGGAATAAACCCCACACACTTTAAAAAGGCTAAATCTAAAGCCATTCAGGGTTCTTTGATTTGTGGCTCTGGGG

Function

symbol description
itga8 Acts upstream of or within cilium assembly and embryonic viscerocranium morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in hair cell; head; inner ear; neuromast hair cell; and pharyngeal arch. Human ortholog(s) of this gene implicated in end stage renal disease; ovarian cancer; renal agenesis; and schizophrenia. Orthologous to human ITGA8 (integrin subunit alpha 8).

NR:

description
integrin alpha-8

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06584 ITGA8; integrin alpha 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924493.2 True 4068 mRNA 0.51 30 6394584 6494806

Neighbor

gene id symbol gene type direction distance location
rbm42 rbm42,LOC108438105,LOC107709618,LOC107686691 coding downstream 2270 6385083 ~ 6392314 (-)
zmp:0000000951 LOC108256735 coding downstream 78326 6313524 ~ 6316258 (-)
dcaf13 dcaf13 coding downstream 92408 6291529 ~ 6302176 (-)
rims2a rims2a,rims2,LOC108256727,LOC107095553,LOC107556969,LOC108438094 coding downstream 106220 6094031 ~ 6288364 (-)
LOC113532744 dcstamp coding downstream 306776 6085341 ~ 6087808 (-)
mindy3 fam188a,LOC107689882,LOC107681582,LOC107717794,LOC107738860 coding upstream 13528 6508334 ~ 6561102 (-)
steap4 steap4 coding upstream 113878 6608684 ~ 6618673 (-)
LOC113532609 LOC108256720 coding upstream 449975 6944781 ~ 6949025 (-)
si:dkey-12j5.1 LOC108256403,LOC108426361 coding upstream 459954 6954760 ~ 7029427 (-)
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding upstream 572192 7066998 ~ 7071362 (-)
G327560 NA non-coding downstream 309935 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 556307 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 556802 5837489 ~ 5837782 (-)
G327505 NA non-coding downstream 558278 5836070 ~ 5836306 (-)
G327362 NA non-coding downstream 654996 5738537 ~ 5739588 (-)
G328083 NA non-coding upstream 153490 6648296 ~ 6741046 (-)
G328215 tbrg4 non-coding upstream 536558 7031364 ~ 7032724 (-)
G328439 NA non-coding upstream 882081 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 953367 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 955591 7450397 ~ 7452117 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 10996 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 416205 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 1417057 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2047331 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 2428469 3957497 ~ 3966115 (-)
G328342 LOC108256401 other upstream 561988 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 883925 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3656691 10151497 ~ 10156800 (-)
G330185 NA other upstream 4027926 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 4428320 10923126 ~ 10930775 (-)

Expression


Co-expression Network