si:dkey-122a22.2 (LOC108256697)


Basic Information

Item Value
gene id si:dkey-122a22.2
gene name LOC108256697
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5796162 ~ 5905417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924619.2
GTGTGACTTGTTTGAGGAAGTTTCCCTGTTCTTCCgcttcactcattcattcacgcTTATTCTCAGGTGAATTTAAGTTTGTGTTGTTCACATGGCGCGCAGGAGAGCAGGTGGCCATGAAACCGCTGGAAATGTTCAGTCTGAGAGAAAGAAGGTGCAGGCAGCAGAAGAGCCTCTTTCTGTGAAACAGCAGCAGGAGAGGAGGAGCTGCTGGACGACTGTGTCATTTTTCGGGAAAATTCTCCTCCTCGTCCTTTTCGTACCACCTTTCCTTAATTATGCCTCGCTTCAGAGAGAAGAACAAGAGCTCAGACCAAGAGATGCACAGTTGATAGATATAGGCTTGGGCCAGAAGATCAGCCTCATCTGCAAAGGCCAAGGAGAACCAGTTGTGATGCTTGACGCTCCAACTGGTATGTCATCTGATATTTGGCATCATGTGCAAGAGAGTGTTTCACAAACCACAAAGGTTTGTGCCTATGACCGAGTGGGCCTGGGCTTTAGCAGGAGAGCTCTGCAGAATGACACTACAGGCATGGAGAAAGTGTGGAGACCATCAACCACTGGAAGGATGGTGGACGACCTCCACCGGTTGGTCAAGGCTGCTGAGATAGCCACGCCCTTCATTCTGGTTGGCTCAGAACTGGGCGCGCTGAACGGCAGGTTTTATACTCACATCTATGACGCGCAAGTGTCGGACTTGGTGCTGATCAATCCCATTCCAGAGGACGTCTTTGAAGAGGAGACGTGGCAGCAGTACTGgtacACACACCTGGTGCCCTCATTACAGATGATGCAGCTCTCTGCAGCCACTGGTGTGAGTCGTCTTCTCCTCATCCTGCGGCTGCTGGAGCCGAGTTTCATTGGAGACAATGTCTCAGGAGAACTGCTCCAACGTCAGAAATACCTCTTGAGTAACCCGGCTCATCAGAGCAGCGCCGTGGACGAGCACTACTTCCTGAACGAGAGCGCGTCTCAAGTCagAGAGATCTCCAAATTCAAGCTGCTATCTAGCAGAATATCATTGAGCGTTATCGTTGGGGACTCATTTGACGAACAGCTCCCTGCTCATCTCAACCAAgtttTTGCTGATGTGCAGAGGAAGTGTTTAAAGCGAGTGTACCCTCAGGCCAAGCTCATTCACATTCAGGGGGCGGACCGTCACATGATCTCTAAAAACGCGTCATCGGTAAGCAAACATTTACTGGAGCTCGTGTCAAAGAGGCAAACCAAACATGCAATGAGGCAATGAGATCCTGTTCAACTGCCTTCCGAACACCACCGTGTTTCCTGTTTGGAAATGATTTACATTCACAGCTGTGCTGCATCATCGCATTGTTTCTGgagagatatatattttttacaacatccaaaactgacaaaatatgactttttttaagcatttgattAGTTATATCTTTCAACTTTGTGTGTCAAATGTTTGCTGCGATTTGTGGGAAAAACCTTTGTTTATCTCAttcatgaatatatttattcaaagaaaacaaagacatCAAGTTTATCCTGAGGATTAAGGTTTAATTGACACcacatcaaaataaaaatttccaACAGCTCTGGAATTTTATTCCATCCATATACATGCATAGCAACaacatttttaagaaatattaattttttttttccattataagGACATTggaatgatctttttttttttttt
>XM_026924620.2
GTGTGACTTGTTTGAGGAAGTTTCCCTGTTCTTCCgcttcactcattcattcacgcTTATTCTCAGGTGAATTTAAGTTTGTGTTGTTCACATGGCGCGCAGGAGAGCAGGTGGCCATGAAACCGCTGGAAATGTTCAGTCTGAGAGAAAGAAGGTGCAGGCAGCAGAAGAGCCTCTTTCTGTGAAACAGCAGCAGGAGAGGAGGAGCTGCTGGACGACTGTGTCATTTTTCGGGAAAATTCTCCTCCTCGTCCTTTTCGTACCACCTTTCCTTAATTATGCCTCGCTTCAGAGAGAAGAACAAGAGCTCAGACCAAGAGATGCACAGTTGATAGATATAGGCTTGGGCCAGAAGATCAGCCTCATCTGCAAAGGCCAAGGAGAACCAGTTGTGATGCTTGACGCTCCAACTGGTATGTCATCTGATATTTGGCATCATGTGCAAGAGAGTGTTTCACAAACCACAAAGGTTTGTGCCTATGACCGAGTGGGCCTGGGCTTTAGCAGGAGAGCTCTGCAGAATGACACTACAGGCATGGAGAAAGTGTGGAGACCATCAACCACTGGAAGGATGGTGGACGACCTCCACCGGTTGGTCAAGGCTGCTGAGATAGCCACGCCCTTCATTCTGGTTGGCTCAGAACTGGGCGCGCTGAACGGCAGGTTTTATACTCACATCTATGACGCGCAAGTGTCGGACTTGGTGCTGATCAATCCCATTCCAGAGGACGTCTTTGAAGAGGAGACGTGGCAGCAGTACTGgtacACACACCTGGTGCCCTCATTACAGATGATGCAGCTCTCTGCAGCCACTGGTGTGAGTCGTCTTCTCCTCATCCTGCGGCTGCTGGAGCCGAGTTTCATTGGAGACAATGTCTCAGGAGAACTGCTCCAACGTCAGAAATACCTCTTGAGTAACCCGGCTCATCAGAGCAGCGCCGTGGACGAGCACTACTTCCTGAACGAGAGCGCGTCTCAAGTCagAGAGATCTCCAAATTCAAGCTGCTATCTAGCAGAATATCATTGAGCGTTATCGTTGGGGACTCATTTGACGAACAGCTCCCTGCTCATCTCAACCAAgtttTTGCTGATGTGCAGAGGAAGTGTTTAAAGCGAGTGTACCCTCAGGCCAAGCTCATTCACATTCAGGGGGCGGACCGTCACATGATCTCTAAAAACGCGTCATCGGAGAAAGACCTCGTGCGAACGAAGAAGAGCCGAGCTACTTTGTGGAAGTGCTGAAATACAGTCACGCCATTTCAGCATTGCAGTCATATCttaatgaaaacagaaacaaatctcactctgtctctctctctcttgctgggAGACAACAAAGTGTTGAGGGACGGACAGAAGGGGGAGGATAATTAAACTGGCCTGAAGACAGGTattcaaatgtttgtggataAACAGCGCAGGACTTTAATAGTTTGCTGTAAAACTTGTAGTTAGGCGCATCAGCTTTTGTTTCATCCATCTGTCCCGACAAATGACTGCAGCAGAAGCTGGAACAGGGGCccaaacaccacaacacacaaatataaactcTGTTTACTGCCTCTGTTCTAGAAATTATGTAACTCTTAACTTCATGAATAAATTGTAAGCAATGGTAAGAAAATAACAATGTACATTAACTGACATGTagtttaaatgttaacaaaataCACCTGAACTGGCTGTTTATCCAAttcatgactaaaaataatccAGATAAATTTGcaataattaaattacagtGTGTCCCTAATGTTGATGAACTCTGGTGAAATGGTCCTGAACTCTGGTGAAAAACATGCTTTTCAGCTTCACTTCTTAATTTTGCCACTCACAGTTTAATTAAcaacatgttcattaatataCTGGTGTAATTTTACTCACTAATGGTATGAACATTGGTTAAGGCAGGCATTGATTATTTGCCCATATGCTTTATTAATTGCTAATGGTACTGATGCTTTGTTGATGTTAATTAATGCCAGTTATGGGAACTGTAATATAAAGTGTTACCTgcatttaatactttttaaagcTCCCTTTTAATCCGTTTTCAGATTTGGTGATATTTTGTGCAGACATGCTTCAATAACATCACTGTGATCTTTAAGACAAATAATCTGGAGTATTTCCGTcaactttttgtccattttttgttCCTTTGTCAACTTCCTTCATATCTACTTGTATTATTGCAGACAAAAAGCATCACACAATTTTACGTTCATATAGTCAGGTTTATTCTGGTGTTCTGTCTGTGAGATCTGAATTTGGTAaataaacgtttttttttttt
>XM_034298142.1
GTGTGACTTGTTTGAGGAAGTTTCCCTGTTCTTCCgcttcactcattcattcacgcTTATTCTCAGGTGAATTTAAGTTTGTGTTGTTCACATGGCGCGCAGGAGAGCAGGTGGCCATGAAACCGCTGGAAATGTTCAGTCTGAGAGAAAGAAGGTGCAGGCAGCAGAAGAGCCTCTTTCTGTGAAACAGCAGCAGGAGAGGAGGAGCTGCTGGACGACTGTGTCATTTTTCGGGAAAATTCTCCTCCTCGTCCTTTTCGTACCACCTTTCCTTAATTATGCCTCGCTTCAGAGAGAAGAACAAGAGCTCAGACCAAGAGATGCACAGTTGATAGATATAGGCTTGGGCCAGAAGATCAGCCTCATCTGCAAAGGCCAAGGAGAACCAGTTGTGATGCTTGACGCTCCAACTGGTATGTCATCTGATATTTGGCATCATGTGCAAGAGAGTGTTTCACAAACCACAAAGGTTTGTGCCTATGACCGAGTGGGCCTGGGCTTTAGCAGGAGAGCTCTGCAGAATGACACTACAGGCATGGAGAAAGTGTGGAGACCATCAACCACTGGAAGGATGGTGGACGACCTCCACCGGTTGGTCAAGGCTGCTGAGATAGCCACGCCCTTCATTCTGGTTGGCTCAGAACTGGGCGCGCTGAACGGCAGGTTTTATACTCACATCTATGACGCGCAAGTGTCGGACTTGGTGCTGATCAATCCCATTCCAGAGGACGTCTTTGAAGAGGAGACGTGGCAGCAGTACTGgtacACACACCTGGTGCCCTCATTACAGATGATGCAGCTCTCTGCAGCCACTGGTGTGAGTCGTCTTCTCCTCATCCTGCGGCTGCTGGAGCCGAGTTTCATTGGAGACAATGTCTCAGGAGAACTGCTCCAACGTCAGAAATACCTCTTGAGTAACCCGGCTCATCAGAGCAGCGCCGTGGACGAGCACTACTTCCTGAACGAGAGCGCGTCTCAAGTCagAGAGATCTCCAAATTCAAGCTGCTATCTAGCAGAATATCATTGAGCGTTATCGTTGGGGACTCATTTGACGAACAGCTCCCTGCTCATCTCAACCAAgtttTTGCTGATGTGCAGAGGAAGTGTTTAAAGCGAGTGTACCCTCAGGCCAAGCTCATTCACATTCAGGGGGCGGACCGTCACATGATCTCTAAAAACGCGTCATCGGACAGGGTGTGTCCTCATGTTGCTTCCATCACTTCCTTAGCCCGAACAGCAACGGTAGCTGAGAAGAACGACCTACTGTAGAAagtgaaaaggagagagaagcGG
>XM_034298143.1
GTGTGACTTGTTTGAGGAAGTTTCCCTGTTCTTCCgcttcactcattcattcacgcTTATTCTCAGGTGAATTTAAGTTTGTGTTGTTCACATGGCGCGCAGGAGAGCAGGTGGCCATGAAACCGCTGGAAATGTTCAGTCTGAGAGAAAGAAGGTGCAGGCAGCAGAAGAGCCTCTTTCTGTGAAACAGCAGCAGGAGAGGAGGAGCTGCTGGACGACTGTGTCATTTTTCGGGAAAATTCTCCTCCTCGTCCTTTTCGTACCACCTTTCCTTAATTATGCCTCGCTTCAGAGAGAAGAACAAGAGCTCAGACCAAGAGATGCACAGTTGATAGATATAGGCTTGGGCCAGAAGATCAGCCTCATCTGCAAAGGCCAAGGAGAACCAGTTGTGATGCTTGACGCTCCAACTGGTATGTCATCTGATATTTGGCATCATGTGCAAGAGAGTGTTTCACAAACCACAAAGGTTTGTGCCTATGACCGAGTGGGCCTGGGCTTTAGCAGGAGAGCTCTGCAGAATGACACTACAGGCATGGAGAAAGTGTGGAGACCATCAACCACTGGAAGGATGGTGGACGACCTCCACCGGTTGGTCAAGGCTGCTGAGATAGCCACGCCCTTCATTCTGGTTGGCTCAGAACTGGGCGCGCTGAACGGCAGGTTTTATACTCACATCTATGACGCGCAAGTGTCGGACTTGGTGCTGATCAATCCCATTCCAGAGGACGTCTTTGAAGAGGAGACGTGGCAGCAGTACTGgtacACACACCTGGTGCCCTCATTACAGATGATGCAGCTCTCTGCAGCCACTGGTGTGAGTCGTCTTCTCCTCATCCTGCGGCTGCTGGAGCCGAGTTTCATTGGAGACAATGTCTCAGGAGAACTGCTCCAACGTCAGAAATACCTCTTGAGTAACCCGGCTCATCAGAGCAGCGCCGTGGACGAGCACTACTTCCTGAACGAGAGCGCGTCTCAAGTCagAGAGATCTCCAAATTCAAGCTGCTATCTAGCAGAATATCATTGAGCGTTATCGTTGGGGACTCATTTGACGAACAGCTCCCTGCTCATCTCAACCAAgtttTTGCTGATGTGCAGAGGAAGTGTTTAAAGCGAGTGTACCCTCAGGCCAAGCTCATTCACATTCAGGGGGCGGACCGTCACATGATCTCTAAAAACGCGTCATCGcatccCCCCCAAAAATCCTCTCCCACCCCTTTTGTTAAGTAACATCAATAAAATTACCTTCGTACAATTGTTGTTCTTAAGGAGTTAGAAATATCTGCCATGTTCCCATTCTCCTAATACTGCTTTCAgtaatgtccttttttttttttttttgttttttacaaagTATTGCATTGAgagcaaatttttaaaaagggagACCAAAATGGATTGCAAACTGAAATACAAGTACTATACAAGAATGCTGCCATCCTGATGAAAACACCCAcatctgagtaaaaaaaaaaatacaaaaaagaaagaaagaaagaaaaaagacagaccaACAGCTACATACATATGCAAAGctggatgtactgtatatgccaAAACATGAGATGCAGAGTTGTGCCTGGTTTTCCCTTCAAACCGTGTTTAAGGCTGAGAAGTCATGAGTACTGCAAATGACATTTAggcatatacaaaaaaaaaaaacttacagcaAATAAGAATGCACAAGTGCTTCAGTAGCTATTTTTGTGtctaaaatgcattttgttttgtattgtctATCATCTTGTTGAACCTACAATACAGTGTAAACAATGATTGCTACACAAGAATGACTATACAATAACATTACAAACAACTCTGATATAAATTTCCTTTGTGTTTAAATTAAGGTTAACTACTCCTAATAATActgattgtaaaataaataaaggtgaaaGTGGCACCAATATTA
>XM_034298144.1
GTGTGACTTGTTTGAGGAAGTTTCCCTGTTCTTCCgcttcactcattcattcacgcTTATTCTCAGGTGAATTTAAGTTTGTGTTGTTCACATGGCGCGCAGGAGAGCAGGTGGCCATGAAACCGCTGGAAATGTTCAGTCTGAGAGAAAGAAGGTGCAGGCAGCAGAAGAGCCTCTTTCTGTGAAACAGCAGCAGGAGAGGAGGAGCTGCTGGACGACTGTGTCATTTTTCGGGAAAATTCTCCTCCTCGTCCTTTTCGTACCACCTTTCCTTAATTATGCCTCGCTTCAGAGAGAAGAACAAGAGCTCAGACCAAGAGATGCACAGTTGATAGATATAGGCTTGGGCCAGAAGATCAGCCTCATCTGCAAAGGCCAAGGAGAACCAGTTGTGATGCTTGACGCTCCAACTGGTATGTCATCTGATATTTGGCATCATGTGCAAGAGAGTGTTTCACAAACCACAAAGGTTTGTGCCTATGACCGAGTGGGCCTGGGCTTTAGCAGGAGAGCTCTGCAGAATGACACTACAGGCATGGAGAAAGTGTGGAGACCATCAACCACTGGAAGGATGGTGGACGACCTCCACCGGTTGGTCAAGGCTGCTGAGATAGCCACGCCCTTCATTCTGGTTGGCTCAGAACTGGGCGCGCTGAACGGCAGGTTTTATACTCACATCTATGACGCGCAAGTGTCGGACTTGGTGCTGATCAATCCCATTCCAGAGGACGTCTTTGAAGAGGAGACGTGGCAGCAGTACTGgtacACACACCTGGTGCCCTCATTACAGATGATGCAGCTCTCTGCAGCCACTGGTGTGAGTCGTCTTCTCCTCATCCTGCGGCTGCTGGAGCCGAGTTTCATTGGAGACAATGTCTCAGGAGAACTGCTCCAACGTCAGAAATACCTCTTGAGTAACCCGGCTCATCAGAGCAGCGCCGTGGACGAGCACTACTTCCTGAACGAGAGCGCGTCTCAAGTCagAGAGATCTCCAAATTCAAGCTGCTATCTAGCAGAATATCATTGAGCGTTATCGTTGGGGACTCATTTGACGAACAGCTCCCTGCTCATCTCAACCAAgtttTTGCTGATGTGCAGAGGAAGTGTTTAAAGCGAGTGTACCCTCAGGCCAAGCTCATTCACATTCAGGGGGCGGACCGTCACATGATCTCTAAAAACGCGTCATCGGATCCCCGgactgatgcacacctctaatctCAACCTCATCTCTAGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC104926269

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924619.2 False 1684 mRNA 0.45 11 5796162 5829326
XM_026924620.2 True 2297 mRNA 0.43 12 5796162 5838330
XM_034298142.1 False 1294 mRNA 0.51 12 5796162 5866524
XM_034298143.1 False 1913 mRNA 0.44 12 5796162 5830060
XM_034298144.1 False 1235 mRNA 0.51 12 5796162 5905417

Neighbor

gene id symbol gene type direction distance location
sqlea sqle coding upstream 193149 5593849 ~ 5603013 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding upstream 204429 5584416 ~ 5591733 (+)
rnf144b LOC108256380,LOC108440759 coding upstream 213135 5565646 ~ 5583027 (+)
ccdc127a ccdc127 coding upstream 242858 5550225 ~ 5553304 (+)
mrpl32 mrpl32 coding upstream 248329 5546551 ~ 5547833 (+)
dpys dpys,LOC107686378 coding downstream 160716 6066133 ~ 6084254 (+)
zgc:101716 LOC108256737 coding downstream 399164 6304581 ~ 6312558 (+)
upk1a upk1a coding downstream 413670 6319087 ~ 6326360 (+)
LOC113532640 LOC108256717 coding downstream 749358 6654775 ~ 6759822 (+)
tbrg4 tbrg4 coding downstream 1124364 7029781 ~ 7043670 (+)
G327178 NA non-coding upstream 189063 5605870 ~ 5607099 (+)
G327071 NA non-coding upstream 254273 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 766372 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 812482 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 871526 4924178 ~ 4924636 (+)
G328024 NA non-coding downstream 742863 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 1044142 6949559 ~ 6961376 (+)
G328208 LOC108256403,LOC108426361 non-coding downstream 1117738 7023155 ~ 7029401 (+)
G328222 NA non-coding downstream 1139629 7045046 ~ 7045278 (+)
G328260 NA non-coding downstream 1222749 7128166 ~ 7136722 (+)
G326997 NA other upstream 457911 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 481548 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 806846 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 866007 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 872481 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1318605 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 1996098 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2467268 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2482770 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 2709656 8615073 ~ 8665836 (+)

Expression


Co-expression Network