slc35b3 (slc35b3,LOC107730012,LOC107667423)


Basic Information

Item Value
gene id slc35b3
gene name slc35b3,LOC107730012,LOC107667423
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9333115 ~ 9349506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924663.2
TTTCATTTCTCAACAAATCTCCCAGGAGTCCATCTTAAGATGTGTAGGGACATCATTACATAGCAGAAAATATTCAATGGAATCATCCGAGGAAATAAACAAGGAGGCTCCAGACACAATGAGTTCCAAATTCAGCTTAATCAACTATAACTCCCGAAAGCACATCTCCATCTCGATACCCTCCTCCACGGAGGCGATGTCCCCGCACATCAAATCCATAGAGGAGCTCCGAGTGCTAGGGGTGAACCTGAGCAGTTTCAGCACTCCCACACAGTTCTTCATCTGCGTGACTGGGGTGTTTCTCTTTTACCTCATCTATGGCTACCTTCAGGAGCTGATTTTCTCAGTAGAGGGTTTTAAACCCTTCGGCTGGTACCTTACCCTGGTCCAGTTCGGGTTCTATTCCATTTTTGGCCTGGTAGAGCTGCAGCTTACTCAGGACAAGAGGAGGAGGATCCCAGGAAAGACATACATGATCATAGCATTTCTAACAGTTGGGACCATGGGCCTCTCCAACACATCGCTGGGATACTTGAACTACCCTACGCAAGTCATCTTCAAATGCTGCAAACTCATTCCAGTTATGATTGGAGGAGTTTTCATACAAGGGAAACGATACAGTTTTGCAGATGTGATGGCTGCTCTGTGCATGAGTCTTGGCCTCATCTGGTTTACGCTGGCTGACAGCAAGGTTACCCCGAACTTCAATGTGACAGGGTTTTTCCTTATTTCCCTGGCGCTTTGTGCTGATGCTGCTATTGGAAATGTGCAGGAAAAAGCCATGAAGCTGCACAATGGATCAAACTCAGAAATGgTGTTGTATTCCTATTCTATTGGGTTCGTGTACATTCTGCTTGGACTTCTGTGTATGGGAGGGCTGGGACCTGCTGTGGCCTTCTGTGCTCAGcatccAGTGATCACATATGGCTatgcattcttcttttctttgACGGGGTACTTTGGCATCTCCTTTGTTCTGGCCTTGATAAAGCTTTTTGGAGCTCTCGTTGCAGTCACAGTGACCACAGGAAGAAAGGCCATGACgattgtcttgtcttttttgttcttctcaAAACCTTTCACTTTTCAGTATGTGTGGGGAGGCCTACTGGTGGTCCTCGGGATCTTCCTTAATGTCTACAGCAAAAACAAGGATAAAATGAAGCTTCCTCCGCTGGCAGAGTTATGGAAACGAGTGCTCAGCAGCAGGAAAGGCAGACTGCTCTCTCAGACCGTGTAAATTAGTGGCCTCTGACCAAACTTTATAGGCTTCTCCACCCACCGTCACACCGGTGTTATGGGAACGGTCAGACCCTCACACTTTTATCAAGGACACAGTGACATGAAGTCTGGTGAAGTTGGCCAGATTTTTGCACTGGACTGAATTCTAAGCTGATCAGAGAGGACACAAACTGTGCAGCAGCAGAATCGTTACTAATCATGTGCAAACTGGATTTTGATGGGAAGGAATCGTTATCATCTGTTTTTCACCTGCATGTGCCACTAACTGATGGCATCTTTTCACACAAAAGTCAGtcatttctattcttttttatctgtgttcatttttttaatctgtgatTGGACAAGGGAAATGCGAGTAACACTACTGTTTCTTTAAAAGGCTGTTGTTTGGGAGTGTATGAGTATGTCAACTGCCATATTTGCTATCCATTTGTTTGGTGAAAGGGTAGctctttttacattaaaaacaaacagagaagtTTATTCAAGCAGTTTGAAGCATTTTCCTAAATGTGTGTAGCTTGCCAGGCATCTCTTATCCGTCGGCTGCAGCTCAGAGAGTTGAAAGGCTGCCAAGCAGCTTCTCAGATGTTTACCCCTCCGATAGCCCAGGGCTTGTTTGATTAGGAGTCCTGGAATAAGATAGCACTTAAAAGAAAACCAACATTGTTCATAGGGTTTGGCTTTAGACCTAATttagggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagagaggGACTGTTAGAGAAATGATTGTTGTAAGCAGtaccactctttttttttttttaatcacagccAGCAAATTATACAAATCAGCATTACCAGCTCAACTGATCAATTAAATGTCTCAAATCACTGCATTTAAAAGACTTATTCaagttcattaaaaataaaaaaaa
>XM_026924664.2
AGTTCCGCCTCCGCAGGAAGTTGTTGGCTTTCGCCTGCGCATGCGCACAGCGCTGCCGGGAAACGGCAGTAGCAGGAAGAGAATTGCGTTTAGTGGTCCGTATTCAGGTGCTATGTAGACAACAGCTTCGAAAACATGAAATATCCCAGCATTACTGTAGAATGAACGGAGAGAATTAGCGCTGGCGTTGGTGACTAAAGCGGTCTCTGTCTTAAACTCGGAAATACGGGAGCGACAGAGCTAACCTGCTGCTATCAACCCCGGAAGTGTTGTGTAGCCTTGTAGCCAGTTAGCTTTGAGCTTGCTTCACCGGTTCTGCTAAATGTTCCTCTTTGCTTATGATGAGGTGGCACACGTGTCACTTTAGCGTCCCGTCACCCAGCCAGCTGTCTCCTCCGTATGTTGGGAAATGAATAATATGATGATGTTTGGACGTTGTAGCTAGTGGTCATGGCTGGCTTTCCAGCTTCTTTCCAGGCCACTTGATAGGCTGAGAGCAGAGGCGCGTTTCAGTGCTCTGATGCTTTCCACGAATCGACACGAATTTGCCCACTGTCTTTAGTTCAGGAGGCTCCAGACACAATGAGTTCCAAATTCAGCTTAATCAACTATAACTCCCGAAAGCACATCTCCATCTCGATACCCTCCTCCACGGAGGCGATGTCCCCGCACATCAAATCCATAGAGGAGCTCCGAGTGCTAGGGGTGAACCTGAGCAGTTTCAGCACTCCCACACAGTTCTTCATCTGCGTGACTGGGGTGTTTCTCTTTTACCTCATCTATGGCTACCTTCAGGAGCTGATTTTCTCAGTAGAGGGTTTTAAACCCTTCGGCTGGTACCTTACCCTGGTCCAGTTCGGGTTCTATTCCATTTTTGGCCTGGTAGAGCTGCAGCTTACTCAGGACAAGAGGAGGAGGATCCCAGGAAAGACATACATGATCATAGCATTTCTAACAGTTGGGACCATGGGCCTCTCCAACACATCGCTGGGATACTTGAACTACCCTACGCAAGTCATCTTCAAATGCTGCAAACTCATTCCAGTTATGATTGGAGGAGTTTTCATACAAGGGAAACGATACAGTTTTGCAGATGTGATGGCTGCTCTGTGCATGAGTCTTGGCCTCATCTGGTTTACGCTGGCTGACAGCAAGGTTACCCCGAACTTCAATGTGACAGGGTTTTTCCTTATTTCCCTGGCGCTTTGTGCTGATGCTGCTATTGGAAATGTGCAGGAAAAAGCCATGAAGCTGCACAATGGATCAAACTCAGAAATGgTGTTGTATTCCTATTCTATTGGGTTCGTGTACATTCTGCTTGGACTTCTGTGTATGGGAGGGCTGGGACCTGCTGTGGCCTTCTGTGCTCAGcatccAGTGATCACATATGGCTatgcattcttcttttctttgACGGGGTACTTTGGCATCTCCTTTGTTCTGGCCTTGATAAAGCTTTTTGGAGCTCTCGTTGCAGTCACAGTGACCACAGGAAGAAAGGCCATGACgattgtcttgtcttttttgttcttctcaAAACCTTTCACTTTTCAGTATGTGTGGGGAGGCCTACTGGTGGTCCTCGGGATCTTCCTTAATGTCTACAGCAAAAACAAGGATAAAATGAAGCTTCCTCCGCTGGCAGAGTTATGGAAACGAGTGCTCAGCAGCAGGAAAGGCAGACTGCTCTCTCAGACCGTGTAAATTAGTGGCCTCTGACCAAACTTTATAGGCTTCTCCACCCACCGTCACACCGGTGTTATGGGAACGGTCAGACCCTCACACTTTTATCAAGGACACAGTGACATGAAGTCTGGTGAAGTTGGCCAGATTTTTGCACTGGACTGAATTCTAAGCTGATCAGAGAGGACACAAACTGTGCAGCAGCAGAATCGTTACTAATCATGTGCAAACTGGATTTTGATGGGAAGGAATCGTTATCATCTGTTTTTCACCTGCATGTGCCACTAACTGATGGCATCTTTTCACACAAAAGTCAGtcatttctattcttttttatctgtgttcatttttttaatctgtgatTGGACAAGGGAAATGCGAGTAACACTACTGTTTCTTTAAAAGGCTGTTGTTTGGGAGTGTATGAGTATGTCAACTGCCATATTTGCTATCCATTTGTTTGGTGAAAGGGTAGctctttttacattaaaaacaaacagagaagtTTATTCAAGCAGTTTGAAGCATTTTCCTAAATGTGTGTAGCTTGCCAGGCATCTCTTATCCGTCGGCTGCAGCTCAGAGAGTTGAAAGGCTGCCAAGCAGCTTCTCAGATGTTTACCCCTCCGATAGCCCAGGGCTTGTTTGATTAGGAGTCCTGGAATAAGATAGCACTTAAAAGAAAACCAACATTGTTCATAGGGTTTGGCTTTAGACCTAATttagggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagagaggGACTGTTAGAGAAATGATTGTTGTAAGCAGtaccactctttttttttttttaatcacagccAGCAAATTATACAAATCAGCATTACCAGCTCAACTGATCAATTAAATGTCTCAAATCACTGCATTTAAAAGACTTATTCaagttcattaaaaataaaaaaaa

Function

symbol description
slc35b3 Predicted to enable 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Orthologous to human SLC35B3 (solute carrier family 35 member B3).

NR:

description
adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15277 SLC35B3, PAPST2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924663.2 False 2159 mRNA 0.44 10 9333115 9349506
XM_026924664.2 True 2623 mRNA 0.45 10 9333489 9349506

Neighbor

gene id symbol gene type direction distance location
ofcc1 LOC108256210 coding upstream 145039 9082979 ~ 9188076 (+)
tfap2a tfap2a,LOC107664660 coding upstream 327895 8993786 ~ 9005220 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding upstream 481799 8839566 ~ 8851316 (+)
atp6v0a1b LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 coding upstream 587145 8677355 ~ 8745970 (+)
LOC113532557 LOC108256723 coding upstream 754041 8558567 ~ 8579074 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding downstream 50736 9400242 ~ 9415382 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 88792 9438298 ~ 9451343 (+)
sycp2l sycp2l,LOC108261788 coding downstream 161102 9510608 ~ 9562189 (+)
LOC113541200 dnajc13 coding downstream 833285 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 995817 10345323 ~ 10426436 (+)
G329361 NA non-coding upstream 359528 8973237 ~ 8973587 (+)
G329354 NA non-coding upstream 387559 8942878 ~ 8945556 (+)
G329288 NA non-coding upstream 584082 8748820 ~ 8749033 (+)
G329126 NA non-coding upstream 633955 8694403 ~ 8699160 (+)
G329042 NA non-coding upstream 996533 8336352 ~ 8336582 (+)
G329522 NA non-coding downstream 2644 9352150 ~ 9352733 (+)
LOC117595781 NA non-coding downstream 123110 9472616 ~ 9482817 (+)
G329574 NA non-coding downstream 130833 9480339 ~ 9480553 (+)
G329581 NA non-coding downstream 141768 9491274 ~ 9491545 (+)
G329564 NA non-coding downstream 216187 9565693 ~ 9568672 (+)
bmp6 bmp6 other upstream 410322 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 511804 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 667279 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 782877 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 954219 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 272173 9621679 ~ 9687491 (+)
G329779 NA other downstream 442178 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 506676 9856182 ~ 9938468 (+)
G330038 NA other downstream 1081827 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1245624 10595130 ~ 10768360 (+)

Expression


Co-expression Network