LOC113532945 (LOC108256150,LOC108442742)


Basic Information

Item Value
gene id LOC113532945
gene name LOC108256150,LOC108442742
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4217568 ~ 4222172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924691.2
CTTAATTTTTCCGCCTTGTGCAATCTGGTATCTTTTTACTCTTCAAGGCAGGAATGCACATGAAGTCCTAAGCATTGAAAAAAGATGAGGTGAGGCCTCCTGGCAGACACAAGCAAGCCATGCAGCAGTGTGAGACCATCCTTTGCCTTTCGGTCTACATCTTCACCTTCGTCACAGGCTTCCCAAGCAACGTCCTGGCCTTCTACACGTTCAGCTGCAAGGTGTGGAGAAAGCCAGTGCCCATCGACATCCTCCTTCTCAACTTGACCATCTCAGACCTCCTATTCCTTCTCTTCCTGCCCTTTAAGATGCAAGAGGTGGTCAGTGGCATGCACTGGGACATGCCATACTTTCTGTGCCCACTGTCTGGCTTCATCTTCTACATGACCATCTACAATAGTGCATTTTTTCTCACTGCAGTAAGTGTCGAGCGCTATCTGGGAGTTGCTTTCCCCATCCAGCATTCATTGAGACGACGACCCATCTACGCCGTGGTGGCCTCAGTCTTCCTCTGGGCGCTCTCCATGCTCCATCTTAGCATTGTCTACATTGTACCATACTACAACCCTGCTGGGACAGGTCCACCGCCTAGGAATGTGTGCTATGAGGAATTTACAGATGCCCAGCTGCACATTCTGCTGCCTGTACGCTTGGAGCTGTGCATTGTGCTGTTCTGCATCCCGTTGCTCATCTGCACTTTCTGCTATGTCAACTTCATTCGGATCCTGTCGCGTTTGCCAAACATTGGCAGACGTAGGAAGCTTCGAGCCATTGGACTTGCCTTGGGCACGCTGCTGGTGTTTGTGCTGTGCTTTGGACCCTACAATGTCTCGCACGTGGTGGGATTCATCACCAAACGCAGCCCTGCATGGAGAGACAAGGCACTGCTACTCAGCACTTTCAATGCCTGCCTGGATCCACTCATCTTTTACCTGTCGTCGGCAGCTGTCCGGAACACGCTGGCATCAATGGCACAGGGTGTGTGGCACAAAATAAAGGCAGGTAGCAGTGTTCTTTCCTGCTGGAGACTGGGAAAAGATGGGCATGAGACTACTAAAAACTCATTTCCAATACCAGGCGAGATTAATGCTCTTTGACAGAAATTGGTGGCGAGAACAGGACACAATCACGTCCTTGTGTTTTTCACAATCCTTTCGGAAAAGGACGCGACCGTTTATATTTTAATCCCCAAAGGAGCAATTACACAGCACATGGAATAGTTGGGGATTTGGAACTTTGCTCAAAGACATTAAGACAACACTTGGGTCAGTAAAATCCGCTCTTTGGAGGTTATTTATTTCCGGGAACCAAATTCGGATGTTATATAAGAGAGAGAACTTTGTAGTGAGCAGACCAAACACAATTGTGGGATTTGAACTTCTTGTTACTAAACCAAAACCTGATCTACCACAGCTCTATCAACATATTTCAACATGCCTGTATGGCtttacgtaaaaaaaaaaacatatgattcCTGCATTGAGTAAGGGCTTGGACAACAGACCTCACATGGGAGATTTATGAGTCCACAGTACGAGAAAAAAGACATCATATACAACTCACTGTGTACACATGACAGCCATATATTGAGTGTTTGCAAACAGAAGCCCTGTGGTTTATGAACGTCTAGCCTTGAATATGTTTTCTTGTGCTTGCTTCTTCAGCCGGAATTAAAGACATGAACTGCGCTGGGCATATTGAACGAGGGGCGAAAAAAGGACCCTTCACCTGGACTGTTCAGTATGATTGGGTGGAGATTAAGCACAGAGTCACAGTTTGTTCAGTGTGGAGATAAAGGATCTGCAATAGCAGGCAATACTTGGGTCAATAGAACTCGCTCTTTCACCTGTTCCATGTTAATATTTGCAGGTTATTTGGTTCTGGGAAAAATGAACAATAGATGATGGACTGGGAACTAACACCAGACGTtatttgagagagaaaagaaaaaaaaggaatatagagcaaacacacacacacacacacacacacacacacactcaggcttTCAATATTTCCACATTCTCTCTTCAGTTCTGGAAATGACAAAACCGCTAAACCTTTCATAcctcaacaaaaaaacaaatcaataaaaagcaaagaaacgaataacaataaaacattataccttgtttttaatgaaattcttCAAATCTTACAGCAGCGAAGCCTGATTATCTTGTCAACCCTACCGCAAAGAGCAATTCATCAGGCCCAGACTGAAATTAGCTGTCATTACTTAACGTGTTTATTGGAGAACCTTGAGGAGTATATTGCTTATTGTAATGTCTGCCGTCCATTTCTGGCCTCTACGGCATCATAAAATTTTTATAGTATATTTCCCTCTTGCTCATAACCGTTTCAAATCTCCCTACAGGATACTGGTGCGTGAGTGAGTTATGATTTATGAACCTAATAAATATTTGGATAAGGTTATTGTCTTTGCtaatctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatgtaatccACTAATTACGTGTGGCAAGAAACAAATGCACAAGGGCTTTGG

Function

GO: NA

KEGG:

id description
K04328 FFAR2, GPR43; free fatty acid receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924691.2 True 2545 mRNA 0.44 2 4217568 4222172

Neighbor

gene id symbol gene type direction distance location
etfb etfb,LOC107552519 coding downstream 238889 3968848 ~ 3978679 (-)
lim2.5 lim2,LOC102215845,LOC100699404,LOC103139272 coding downstream 266608 3945550 ~ 3950960 (-)
nek10 nek10 coding downstream 301600 3892887 ~ 3915968 (-)
efhb efhb coding downstream 505050 3701334 ~ 3712518 (-)
LOC113532763 satb1 coding downstream 545435 3616595 ~ 3672133 (-)
LOC113532947 NA coding upstream 3788 4225960 ~ 4233987 (-)
LOC113532948 NA coding upstream 20182 4242354 ~ 4244860 (-)
LOC113532587 LOC108256689 coding upstream 28770 4250942 ~ 4256972 (-)
si:dkeyp-97a10.3 LOC108256724 coding upstream 39649 4261821 ~ 4273813 (-)
ago1 ago1,LOC108256363,LOC103040377,LOC103367053,LOC102230823,LOC107379324 coding upstream 128546 4350718 ~ 4374894 (-)
G326557 NA non-coding downstream 23321 4192950 ~ 4194247 (-)
G326488 NA non-coding downstream 140600 4061916 ~ 4076968 (-)
G326236 NA non-coding downstream 215743 4001618 ~ 4001825 (-)
G326235 NA non-coding downstream 216053 3999109 ~ 4001515 (-)
LOC113532993 NA non-coding downstream 335684 3873923 ~ 3881884 (-)
G326597 NA non-coding upstream 162903 4385075 ~ 4394774 (-)
LOC113532978 NA non-coding upstream 186319 4408491 ~ 4411401 (-)
G326630 NA non-coding upstream 279417 4501589 ~ 4502601 (-)
G326830 NA non-coding upstream 745126 4967298 ~ 4968547 (-)
G326875 NA non-coding upstream 882660 5104832 ~ 5105966 (-)
vsig10l vsig10l other downstream 251453 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 421200 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 813150 3319544 ~ 3404418 (-)
LOC113532533 LOC108256344 other downstream 966121 3230021 ~ 3251447 (-)
G325145 mtmr11 other downstream 2120133 2088259 ~ 2097435 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 86434 4308606 ~ 4347253 (-)
ubr5 ubr5 other upstream 709983 4932155 ~ 4977527 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 1607302 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 2034231 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 2834622 7056794 ~ 7062428 (-)

Expression


Co-expression Network