LOC113532947


Basic Information

Item Value
gene id LOC113532947
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4225960 ~ 4233987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924693.2
ATAAGATACAAATCTCTTGCTTTTCTGAGTGTGTCAGTGTTGGCAAATCATTATATAGAGCACTCATCACATCTGAGCAAGAGAGTTGGACACATCTGAGCAAGAGACCTCACACGGATTAACAAAGATTGCCTTAAAAGCTAACGATGGCGTGGACAGATCTGACAAATTTGGTCCTGGCAGTGGATGCCATCACACTGATTGCAGGTCTTCCTGCCAACCTGCTGGCTCTCTACACCTTCATTCAAAAAGTGAAGCAGCGAACTACGCCCATCGATGTGTTCTTGCTCAACCTCACCATCTCAGATCtaatcttcctttttttccttccgTTCCGCATGAAAGAGGTGACCGACGGAAAATGGACCATGAGCCACTTTCTCTGTGCACTTTCGGGGTTCATCTTCTACACAACCATTTACAACAGCACCATGCTTTTAACAGCTATCAGTGTGGAGCGCTATCTGGGAGTGGCCTTTCCAATCAAGTACAAACTCAAGCGACATCCTCGAAATGCCGTGATCGCCAGTGTCATATTCTGGGTGGTTTCCATGGCCCATTGCAGTATTGTCTACATTATGCAGTACTACAGGCCCGATAATGAAACTCTCTCTGATCAGAAAAACAAGGAGGTCTGCTATGATGAGTTTAACAAAGAACAGTTGGAAATCCTTTTGCCTGTCCGTTTGGAGTTGTTCATCGTGCTGTTCTTCACCCCTTTTATCATCTGCTGCTTCTGCTACATCAAATTCATCCACATTCTCTCCCGGCTACCTAACATCTCACCTAAGAAGCGCTCCAGGGCCATTGGGCTTGCCCTAGCCACCCTCCTGGTCTTTATCATCTGCTTCCTGCCTTACAATGTGTCCCATGTTGTGGGTTTTATTGGATCATTCAGTCCCTCCTGGAGAGTGTATGCATTGCTCCCCAGCACGTTTAATGCCTGTTTGGACCccctcattttttatttctcctcttCAGCACTTCGGGGGACTTTAAAACACCTGATACGAAGGTTCAACAATTGGATGCACCTGTCCTGCTGCTGGAAATTGTTCAACTGTTCCCAGTTAAAATGTAATGCACATGAAGAAAGCACACAGAGTTCCAATGACACTGTGGACTAGTAATTCAAAAAAGTAGTTTAATGATGCTGATAAACAACAGTAAAAAATGTCCAACCGCACTCCAATTCCACACAGgctataaattacatttccagcttcagtgTTTCTTTAGGCTAATGTCAGGTAAATGTGCAAAGTAATAAATCTATGTATcctattacactatttaaggatgTACCAATCCTTACAATGCATTGATATGGACAACATGGTGGCTCAGCTGAAATTTTTGATTTGGGAAGTAAAAGTGTGCAGCATGGAAACTCATGTCCGACAACAGAGAGGTCCTTAATGCTCAGAGAGTGGCTTTCTTTGGCTAGAGAATGCAATGTCTACAGCAGTATCTGGGAGATATTCCCAAGCTGTTAATGACCCAGGAGTTGAACCACCATGTTCAACTCTGGCCTTAGTAGAGTCTGAAAATATTAATCCATGCTTTTTGTCAACTTGTGTTTTAGCAAACTTACCCTTGTCAATCCaatgttcactgatggagatcAATCCAAAGCACTTGGTCTTTACTGCCATTACAAGGCCGTACTGTAAATAACCTAACAGCATGACAGTATGTGTGAAATGTGCCATTTGTTTATATAGTGTTCTCCATTTTGGGTAGCACTGTAGGAACCCAATAAATGTGAATTTTACCTCCTGTGTTTAGGTCAGGATAACATTTTTGTGCAGACACCACAGAATGTGATGAACAGTGTATGTACGAATATGAATGTAGTTTGACCATTACTATAAAACTTTATTCAACTTTTGGGTATGTAGAAACAATTTATACTGGAATATTTTTTTAGCTATTAATGCAGGGAGATTCAACATATGTTAACACTTTACttgcaacatttttctttagttttctttttttggttacTGTTGTGGGTTTTTGAAGCAATGAAGTTACATTTTACAGTCCAAAATTAGTAACTTACCCTCCTTGCGTTATGATGTTACTGTGTTTCTGCTACACTATTACAGTGTTTCGTGTTAAATATCAGGAATAAGAAGTCTGGAAATATGAATTTAAAGATGAGAAGGGATATGCACTAGCTCTAGGACACCTTGAATTGGTATTGGAACAGttccatcctttttttttgtaattctgttttttaCTTGGTatataatccatccatccattttccgtaccacttattctacacagggtcaca

Function

GO: NA

KEGG:

id description
K04326 FFAR3, GPR41; free fatty acid receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924693.2 True 2305 mRNA 0.41 3 4225960 4233987

Neighbor

gene id symbol gene type direction distance location
LOC113532945 LOC108256150,LOC108442742 coding downstream 3788 4217568 ~ 4222172 (-)
etfb etfb,LOC107552519 coding downstream 247281 3968848 ~ 3978679 (-)
lim2.5 lim2,LOC102215845,LOC100699404,LOC103139272 coding downstream 275000 3945550 ~ 3950960 (-)
nek10 nek10 coding downstream 309992 3892887 ~ 3915968 (-)
efhb efhb coding downstream 513442 3701334 ~ 3712518 (-)
LOC113532948 NA coding upstream 8367 4242354 ~ 4244860 (-)
LOC113532587 LOC108256689 coding upstream 16955 4250942 ~ 4256972 (-)
si:dkeyp-97a10.3 LOC108256724 coding upstream 27834 4261821 ~ 4273813 (-)
ago1 ago1,LOC108256363,LOC103040377,LOC103367053,LOC102230823,LOC107379324 coding upstream 116731 4350718 ~ 4374894 (-)
si:ch211-107n13.1 LOC108256083 coding upstream 216363 4450350 ~ 4466446 (-)
G326557 NA non-coding downstream 31713 4192950 ~ 4194247 (-)
G326488 NA non-coding downstream 148992 4061916 ~ 4076968 (-)
G326236 NA non-coding downstream 224135 4001618 ~ 4001825 (-)
G326235 NA non-coding downstream 224445 3999109 ~ 4001515 (-)
LOC113532993 NA non-coding downstream 344076 3873923 ~ 3881884 (-)
G326597 NA non-coding upstream 151088 4385075 ~ 4394774 (-)
LOC113532978 NA non-coding upstream 174504 4408491 ~ 4411401 (-)
G326630 NA non-coding upstream 267602 4501589 ~ 4502601 (-)
G326830 NA non-coding upstream 733311 4967298 ~ 4968547 (-)
G326875 NA non-coding upstream 870845 5104832 ~ 5105966 (-)
vsig10l vsig10l other downstream 259845 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 429592 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 821542 3319544 ~ 3404418 (-)
LOC113532533 LOC108256344 other downstream 974513 3230021 ~ 3251447 (-)
G325145 mtmr11 other downstream 2128525 2088259 ~ 2097435 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 74619 4308606 ~ 4347253 (-)
ubr5 ubr5 other upstream 698168 4932155 ~ 4977527 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 1595487 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 2022416 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 2822807 7056794 ~ 7062428 (-)

Expression


Co-expression Network