LOC113532949 (apoa2)


Basic Information

Item Value
gene id LOC113532949
gene name apoa2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2010189 ~ 2011797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924695.2
CCTCTGGAGCTGCTATAAAAAGGTCTGGCTCCTGAAAGAACGCACCATCAGGTCCTAGACATTCAGGAGTGAAGGCAAACCTTGCTCAGTCTGCAGCCATGAAGTTCTCCCTCATCGCCGCCCTCGTCATCGCGCTGGCCATCGgCTCCCAAGCTGCCAGCCTGGTCAAGAGAGAAAGTCCTGAAATGCCTCCTGAGGTTGAAAAGATCGCCAGTTACTTCCAGGACCTCGTCCAAAACCTTAAAGCCCTCGAGGCCCCTGAGCTGGCCAACAAGGCCAAggCTTACATGGAGGAGAGCAGAGCCCAGCTCCAGCCCGTGGTTGAGAAGCTCCAGGAGCAGCTGAAGCCCCTCTCCAGCAACATCGAGGAGCAGATCGAGCCTCTGGCCGCCTCCGTCCGCGCTCAGATCGCCCCCTACACCAACCTGATGCAGAGCCAGATCGAGGACATGCTCAGGTTCGTGGTTGATCAGACCAAGGCCATCCTGCCCCCtcagtaaaaaacaaacaaaacactgaaaaaagccTGATGGGAAATCACCACCGCCCTGTGACTGACATCACTCACCTATCTGAAGCAATAAAGGGGTTGAAAGGCTTTA
>XM_034297949.1
ACATTCAGGAGTGAAGtaaccacaggtttatatcctAGGCAAACCTTGCTCAGTCTGCAGCCATGAAGTTCTCCCTCATCGCCGCCCTCGTCATCGCGCTGGCCATCGgCTCCCAAGCTGCCAGCCTGGTCAAGAGAGAAAGTCCTGAAATGCCTCCTGAGGTTGAAAAGATCGCCAGTTACTTCCAGGACCTCGTCCAAAACCTTAAAGCCCTCGAGGCCCCTGAGCTGGCCAACAAGGCCAAggCTTACATGGAGGAGAGCAGAGCCCAGCTCCAGCCCGTGGTTGAGAAGCTCCAGGAGCAGCTGAAGCCCCTCTCCAGCAACATCGAGGAGCAGATCGAGCCTCTGGCCGCCTCCGTCCGCGCTCAGATCGCCCCCTACACCAACCTGATGCAGAGCCAGATCGAGGACATGCTCAGGTTCGTGGTTGATCAGACCAAGGCCATCCTGCCCCCtcagtaaaaaacaaacaaaacactgaaaaaagccTGATGGGAAATCACCACCGCCCTGTGACTGACATCACTCACCTATCTGAAGCAATAAAGGGGTTGAAAGGCTTTA

Function

symbol description
apoa2 Acts upstream of or within chordate embryonic development; epiboly involved in gastrulation with mouth forming second; and nuclear division. Is expressed in liver and yolk syncytial layer.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924695.2 True 602 mRNA 0.55 4 2010189 2011797
XM_034297949.1 False 566 mRNA 0.55 4 2010189 2011739

Neighbor

gene id symbol gene type direction distance location
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 33237 1952830 ~ 1976952 (-)
rgl2 LOC108256293,LOC108433895 coding downstream 246783 1735617 ~ 1763406 (-)
si:dkey-33i11.1 fcgr2a coding downstream 291596 1714275 ~ 1718593 (-)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 301943 1686703 ~ 1708246 (-)
LOC113533022 fxyd1,LOC108433901,LOC108256298,LOC103360964,LOC107728489 coding downstream 342452 1650037 ~ 1667737 (-)
tmem176l.1 NA coding upstream 256213 2268010 ~ 2272046 (-)
si:dkey-152b24.7 LOC108256182 coding upstream 323676 2335473 ~ 2339983 (-)
mex3a mex3a,mex3b,LOC107688221 coding upstream 365681 2377478 ~ 2384403 (-)
LOC113532929 NA coding upstream 393873 2405670 ~ 2409342 (-)
zmp:0000000881 NA coding upstream 400004 2411801 ~ 2416406 (-)
G325056 NA non-coding downstream 61978 1906943 ~ 1948211 (-)
G325058 NA non-coding downstream 89717 1919271 ~ 1920472 (-)
G325003 NA non-coding downstream 112008 1897711 ~ 1898181 (-)
G324980 NA non-coding downstream 262181 1747657 ~ 1748008 (-)
G324970 NA non-coding downstream 285425 1724010 ~ 1724764 (-)
G325090 NA non-coding upstream 8383 2020180 ~ 2020405 (-)
LOC113532493 NA non-coding upstream 43386 2055183 ~ 2142077 (-)
LOC113533076 NA non-coding upstream 203673 2215470 ~ 2238076 (-)
G325311 LOC108256179,LOC108433877,LOC108433850 non-coding upstream 240351 2252148 ~ 2255378 (-)
G325351 LOC108256181 non-coding upstream 303335 2315132 ~ 2333757 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 441683 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 559189 1403264 ~ 1451000 (-)
G324748 NA other downstream 639160 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 668118 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 908072 1043313 ~ 1102117 (-)
G325145 mtmr11 other upstream 76462 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1218224 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1307747 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 1708892 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 1945700 3957497 ~ 3966115 (-)

Expression


Co-expression Network