rab25b (rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436)


Basic Information

Item Value
gene id rab25b
gene name rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2358315 ~ 2362999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924736.2
ATATGACTGCACCTGTGCTCACCCTACTCGTTCAACCTGCTTTACGATTCGGTCACACCCCATCTCCAACTACCCGAGTTCTACTTATCAGCGGAAATGCCAAGCCAAACATCACGGCTACTTCCTCGTCCTCGCAGAGTTTGAGACAGAGGAACTAATGTGAGGGCTGAGAATGGGATCAGACGAGGCCTACaactttgtttttaaagTGGTTCTCATAGGGGAATCAGGAGTAGGCAAGAGCAACTTGCTTTCACGCTTTACTAAGAACGAGTTCAACCATGACAGCAGGACCACTATTGGTGTGGAGTTCAGTACGAGGACTATGGAGCTGAACGGCCTCACTATTAAAGCCcagatttgggacacagccggaTTGGAGCGGTATCGTGCCATCACCTCAGCTTATTATCGGGGTGCTGTTGGAGCGCTACTAGTTTATGACATTTCAAAGCACCTGACCTATCAGAGTGCCGAGCGCTGGCTGAAGGAACTTTACGACCATGCCGATCCCCAAATTGTGGTCATGCTGGTTGGTAACAAGTCAGACTTGGCATCGGTACGAGCTGTGTCAACCGAGGATGCAAAAAATTTTGCAGaAAAGAACGGATTGCTGTTCATGGAAACCTCTGCATTGGAATCAACAAATGTTGAGGCCGCTTTCAACAACGTCCTCACAGAAATCCACAAGAAAGTAAGCAACAAAGAGGTGACCCGTGGCTCAGTCGGCGCCATGTCACTGTCCAATCCCAACGCCTCACCCACTGAAGCTCAGGACGAGAAGAAGCCCTGCTGTAAAAACTTATAAGAATGAAGATATGGCAAAATATAGAGGAATTGAGAGGACCACATTGTGTCTGGAGGGACACGGTGCTGTCTGTCCAATGATAAATCCAAACGAACCACTGTTTGCTGACTGATGTGGCCATACGTATTTCTTTGTGGGATGTCACTACTGTGTTACTATCAGGAGAAAGTATtcttgtgcatgttttttaGGCTGAAATTGCTTTCTTAGTTGGTTTTCCTGTCTTCTCTCACATGCACGCtagcatttttagcatttctTAGTGTTGTAAAAAGGAtgttatttatgaaataatgtCACCATGTAGCAATTGTCTTTAGTCATAATTTAGAAGTAATTTCAAATGATTGTTAGATGTAAATTTGacatattaaaaacattgttacacTAAAAGTTGTCAAATAACGAATAAAACTGTGCACTACATTTCATGCCTTTCAATCTTCACCCAGTTCAATCCTTATTATAATAAGGACACACGTTTTCTTTTAATACTGATATATCAATCAAACAAGATAGAGATGGACTGTAAGCAATGATTAATAAATCGATTATATGCCTGTGAAA
>XM_026924737.2
TGTGCTCACCCTACTCGTTCAACCTGCTTTACGATTCGGTCACACCCCATCTCCAACTACCCGAGTTCTACTTATCAGCGGAAATGCCAAGCCAAACATCACGGCTACTTCCTCGTCCTCGCAGGTAAAACTTCACACCTAAACACACGGAGAGCTGGAGCGTTCCTTGTTGGttctttgtttcattcttgcctCCACATCTGGCAGTGCTGAAGTTTGAGACAGAGGAACTAATGTGAGGGCTGAGAATGGGATCAGACGAGGCCTACaactttgtttttaaagTGGTTCTCATAGGGGAATCAGGAGTAGGCAAGAGCAACTTGCTTTCACGCTTTACTAAGAACGAGTTCAACCATGACAGCAGGACCACTATTGGTGTGGAGTTCAGTACGAGGACTATGGAGCTGAACGGCCTCACTATTAAAGCCcagatttgggacacagccggaTTGGAGCGGTATCGTGCCATCACCTCAGCTTATTATCGGGGTGCTGTTGGAGCGCTACTAGTTTATGACATTTCAAAGCACCTGACCTATCAGAGTGCCGAGCGCTGGCTGAAGGAACTTTACGACCATGCCGATCCCCAAATTGTGGTCATGCTGGTTGGTAACAAGTCAGACTTGGCATCGGTACGAGCTGTGTCAACCGAGGATGCAAAAAATTTTGCAGaAAAGAACGGATTGCTGTTCATGGAAACCTCTGCATTGGAATCAACAAATGTTGAGGCCGCTTTCAACAACGTCCTCACAGAAATCCACAAGAAAGTAAGCAACAAAGAGGTGACCCGTGGCTCAGTCGGCGCCATGTCACTGTCCAATCCCAACGCCTCACCCACTGAAGCTCAGGACGAGAAGAAGCCCTGCTGTAAAAACTTATAAGAATGAAGATATGGCAAAATATAGAGGAATTGAGAGGACCACATTGTGTCTGGAGGGACACGGTGCTGTCTGTCCAATGATAAATCCAAACGAACCACTGTTTGCTGACTGATGTGGCCATACGTATTTCTTTGTGGGATGTCACTACTGTGTTACTATCAGGAGAAAGTATtcttgtgcatgttttttaGGCTGAAATTGCTTTCTTAGTTGGTTTTCCTGTCTTCTCTCACATGCACGCtagcatttttagcatttctTAGTGTTGTAAAAAGGAtgttatttatgaaataatgtCACCATGTAGCAATTGTCTTTAGTCATAATTTAGAAGTAATTTCAAATGATTGTTAGATGTAAATTTGacatattaaaaacattgttacacTAAAAGTTGTCAAATAACGAATAAAACTGTGCACTACATTTCATGCCTTTCAATCTTCACCCAGTTCAATCCTTATTATAATAAGGACACACGTTTTCTTTTAATACTGATATATCAATCAAACAAGATAGAGATGGACTGTAAGCAATGATTAATAAATCGATTATATGCCTGTGAAA

Function

symbol description
rab25b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Orthologous to human RAB25 (RAB25, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-25-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07906 RAB25; Ras-related protein Rab-25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924736.2 False 1375 mRNA 0.43 6 2358315 2362999
XM_026924737.2 True 1451 mRNA 0.43 6 2358328 2362999

Neighbor

gene id symbol gene type direction distance location
lamtor2 lamtor2 coding upstream 2099 2354104 ~ 2356216 (+)
ubqln4 ubqln4,LOC107726678,LOC107756885,LOC106580647 coding upstream 8796 2339453 ~ 2349519 (+)
LOC113532585 LOC108256181 coding upstream 24591 2329248 ~ 2333724 (+)
LOC113532738 LOC108256190,LOC108256173 coding upstream 34249 2318318 ~ 2324066 (+)
LOC113532733 LOC108256181 coding upstream 41805 2313664 ~ 2316510 (+)
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding downstream 1754 2364753 ~ 2372440 (+)
LOC113533066 thsd7a,LOC108256167 coding downstream 63745 2426744 ~ 2537060 (+)
LOC113532859 LOC108256203 coding downstream 179943 2542942 ~ 2549897 (+)
ica1 ica1,LOC107592479 coding downstream 191121 2554120 ~ 2563081 (+)
col28a1b LOC108256731 coding downstream 220220 2583219 ~ 2607036 (+)
G325247 NA non-coding upstream 23209 2334879 ~ 2335106 (+)
G325089 NA non-coding upstream 337927 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 346334 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 357311 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 425989 1927080 ~ 1932326 (+)
G325268 NA non-coding downstream 33674 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 37471 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 281042 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 708850 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 776313 3139312 ~ 3208962 (+)
LOC113533074 LOC108256184 other upstream 142905 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 213790 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 438605 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1194701 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1348092 956584 ~ 1010223 (+)
G325435 NA other downstream 202701 2565700 ~ 2569739 (+)
hamp NA other downstream 1648381 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2028521 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2035660 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2557981 4920980 ~ 4923681 (+)

Expression


Co-expression Network