Item | Value |
---|---|
gene id | pop1 |
gene name | pop1 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047616.1 |
NCBI id | CM018562.1 |
chromosome length | 21037487 |
location | 8286243 ~ 8298470 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
pop1 | Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA processing. Predicted to act upstream of or within tRNA 5'-leader removal. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Human ortholog(s) of this gene implicated in anauxetic dysplasia 2. Orthologous to human POP1 (POP1 homolog, ribonuclease P/MRP subunit). |
description |
---|
PREDICTED: skin secretory protein xP2-like |
id | name | namespace |
---|---|---|
GO:0016070 | RNA metabolic process | biological_process |
GO:0090305 | nucleic acid phosphodiester bond hydrolysis | biological_process |
id | description |
---|---|
K01164 | POP1; ribonuclease P/MRP protein subunit POP1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026924756.2 | True | 3679 | mRNA | 0.49 | 16 | 8286243 | 8298470 |
XM_034298207.1 | False | 3673 | mRNA | 0.49 | 16 | 8286243 | 8298470 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
mrpl17 | mrpl17,LOC107657704,LOC107699486,LOC107595760 | coding | upstream | 17280 | 8265019 ~ 8268963 (+) |
LOC113532619 | ahrr | coding | upstream | 35420 | 8218540 ~ 8250823 (+) |
LOC113533036 | anks6,LOC103376383 | coding | upstream | 71414 | 8196241 ~ 8214829 (+) |
LOC113532572 | LOC108256701 | coding | upstream | 95984 | 8184092 ~ 8190259 (+) |
cdh17 | LOC108256708 | coding | upstream | 129950 | 8140082 ~ 8156293 (+) |
LOC113532920 | kcns2 | coding | downstream | 32181 | 8330651 ~ 8334727 (+) |
LOC113532557 | LOC108256723 | coding | downstream | 260097 | 8558567 ~ 8579074 (+) |
atp6v0a1b | LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 | coding | downstream | 378885 | 8677355 ~ 8745970 (+) |
zgc:101569 | zgc:101569,LOC108256216,LOC108426563,LOC104953925 | coding | downstream | 541096 | 8839566 ~ 8851316 (+) |
tfap2a | tfap2a,LOC107664660 | coding | downstream | 695316 | 8993786 ~ 9005220 (+) |
G328995 | pigm | non-coding | upstream | 22207 | 8257525 ~ 8264036 (+) |
G328944 | NA | non-coding | upstream | 69589 | 8216446 ~ 8216654 (+) |
G328755 | NA | non-coding | upstream | 150080 | 8135517 ~ 8136163 (+) |
G328754 | NA | non-coding | upstream | 150788 | 8135080 ~ 8135455 (+) |
G328750 | NA | non-coding | upstream | 180781 | 8105262 ~ 8105462 (+) |
G329042 | NA | non-coding | downstream | 37882 | 8336352 ~ 8336582 (+) |
G329126 | NA | non-coding | downstream | 395933 | 8694403 ~ 8699160 (+) |
G329288 | NA | non-coding | downstream | 450350 | 8748820 ~ 8749033 (+) |
G329354 | NA | non-coding | downstream | 644408 | 8942878 ~ 8945556 (+) |
G329361 | NA | non-coding | downstream | 674767 | 8973237 ~ 8973587 (+) |
LOC113532663 | NA | other | upstream | 383635 | 7901515 ~ 7902608 (+) |
erp44 | erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 | other | upstream | 1038964 | 7224022 ~ 7247279 (+) |
G326997 | NA | other | upstream | 2947992 | 5332268 ~ 5338251 (+) |
acbd7 | acbd7,LOC108256514 | other | upstream | 2971629 | 5311209 ~ 5314614 (+) |
klf10 | LOC108256604 | other | upstream | 3296927 | 4984415 ~ 4989316 (+) |
osr2 | osr2,LOC106591507 | other | downstream | 74215 | 8372685 ~ 8378896 (+) |
LOC113532774 | vps13b | other | downstream | 89717 | 8388187 ~ 8550238 (+) |
G329111 | LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 | other | downstream | 316603 | 8615073 ~ 8665836 (+) |
LOC113532648 | ptprh,LOC108256157 | other | downstream | 470275 | 8768745 ~ 8821311 (+) |
bmp6 | bmp6 | other | downstream | 552934 | 8851404 ~ 8922793 (+) |