pop1 (pop1)



Basic Information


Item Value
gene id pop1
gene name pop1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8286243 ~ 8298470 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026924756.2
ACCCATGAGCAGCGCGTTGCGGAAGTGCTGCTACACGTGGTTTTTTAGCGCTGGCGTGCTGAGGACTGCAGGACAGGATCATTCTATACTCTTAGTTAATTAGGTATTCCTGATCAAACCAACATACACAATGTCGGGGGCCAAAGACAGAATGCGACATAAGAAAATGAGAAATCAGCCCAGTAATGTGACTTACTCGCACACAGGTCGCAGTTCCGAttcgcagcagcagcagcagatgaGGAGACTCCCACAGCATCCCAGCAGCTGGATGagggggcatcaggatggaggAGTTAGACATGAGCAGGCACTGCCCAAATACATCACTGCATCACTCTTTGCCAAAGCACGAGCTGCAGAAGTCAATGCCATGTTGAGGGCTGTCACAAAGACCACAGGTAGCTCTCAGGTATTTGGAGCTCTGCCAAAGCATATGCGCCGAAGAGCCATGAGCCACAACACCAAGAGATTGCCTTGCCGACTGAGAGAGATGGCACAGAGAATGTTGCAGAAGAGTCAGCAGGCagggaagaaagagaaaaaagagcagtCAAAGACCAAAAGTCGGCGTGCCCGCCGCCGCCATGGCAACTTGTTGCTGGAGTTCAACCGACGGCAGCGTAAGAATAAATGGTTAGAGACTCACATCTGGCATGCCAAGCGTTTTCACATGCTGAAGAAATGGGGCTACTGTCTTGGAGACCGACCCACATATAAGTGCTACAGAGCTAGCTATAGGGCCATGAATTCTGGCTGTCTGCTGCAGGACCTCTCATACTATTGTTGCGTGGAGCTCCATGGTCCAGAGGAACAACTACTGAATGCACTCTCCAGGCTGACCAGCAAAGACGCAGGCCCAACATTTGCAGCAGCATCATGTGTGTCAGGGCAGAAAGAGGGGAGTGTTATGCTTTACAAGGCTGATCAGTATCCTCACCAGCCCCTGGGCCCTGTGTGCTTCCTCTGGAGGCCTTGCAGTACTACATCACCTCACAGACAGCTGTGGATCTGGCTACATCCTTCCCTAAAACAGGATCTTCTACCAGAATTGCAGGCAGTGTGCCAGTGCTTTGAGGCAGTGGCTCCAGCTGTTGTAGAAGTGGTCCCATCAGAGAACCTGGCAGAAGCAAGTCCCATTCCACCTGCACCTTCTGACTTAAGCGCTGAGCCACAGTGTTccaagagaaagaggaaagtgGAAGCTGATGATGAGAATGGCTGCCCTGCCAAAAAAATTGTGGGTGATGGCACTCGATCACTTTCGACTCCTGTTAGTTGGATGTCCAGCACAACTGAGATTGTGATCAGTGATCTCACCATGGAAATAGTACGGTATCGTCTAATTGGTCCGCTCTCCCACTCTGTGCTGACTGAGATACTTGTACCGGCAACTGACTGTGAGagtAATATCAAAATGACTTCATCCCCTTTCTGGTGGCCAGAGGAGTGTAAGAAAGAGGAGAGCATGTCCCTACATCGCCAGCAAACAGATGTTTTTCAGCTCCTGAGAGGTGTATACTCTACGGCTGAGCTCCCAGCAGGGTGTGTTCTGGGGCTGACTGTAGATGACCCAAGACTGTCTTTGTCTGCAAAACGGGGAAAAGCTATGCCTGACCTTCACCAGACCCAAGGTGTTGACGAGGAAGGAAGAAGAAATTTGACACTGAGAGGAGTCCCTTCTCCCTGTGCTCAGAGTGCTCTATGGGAGAAGTCTGTCCGAGAGAACGTTACAAACAACAAGATTTCAGAACAGGATCTGAACAGGATGAAGAGGGAGTTGTTAGTTCCAGGCTCCAGGTTGCCGACCCCTGCACAGAGCCGAGTGCCAATTCTGCTGGTTAACCAGGCAGGGAAACAGCTGGGAGAGGAGCGGCTTGGATGGGGATCCGGTTGGGACTTGCTACTGCCCAAGGGTTGGGGCATGGCATTTTGGGTACCTTTGGTGTACTGTGGTGTACGTGTTGGGGGTCTCCAGATGAGTTTAAAACACTCCCAGAATAAAAGCGTGCCCCACTTTCCTCATGATTACCCAGACTGCCCTGCAGGTGTCCGCTTCCAGGAGCAGCAGGAGATCGAACTGCTGGAAAAGTTTAAGAGACACCCACCTTCCAAACGCACAAACTACATCAAATACGGCTGCGTGGCTCCTTTCTGGTGCCCATGGCAACAGCTGGTAGAGGAATGGGAGGAGAGAGTGAAACAACATGAAGACAACCAAGACTCTAAGACAGTTGAAATGAAAGACGTGACATCGCTTTCTCGAGATAGCCCAAACCCAGCATCTGCTTTTACTGTACTGAGGAGCCGTAAGGTGCTGAGGCAGCTGTCAGTCTGGTGTCGTCCATCTTCTTCCCACCCTCGGAGAGCGCCGAGTGGTTGTCGTGCCCCACCATTGTGCCCTACCATATCTCTGCAGGCAGAGTGGAAGCGGTGTTTGttgtgggtgcgtgtgtgtgctctgGGTAAGGGGCAGCCTGCACTTCATGCCATGCTTTGTGTGCCCACCACTGAGGACCTGCAACGCTTACGTGAAGACCCCCAGTGGAGTGGCCCCAAGGAACCGCAACACACAGACCACCTAAAGCACCAGCTGAAGAGGAAGGGCAAGAGAGGCGAGGCTGCACTATGCTGTTCTGCTCTTAAGAAAGAGCAAGACTGCAACATTCCTGAAAATGATGACGTTAGTTCTGCTTCCACGAAGGAAAAAAACCCTGAACTTGTCCCTATTAATCAACACTCTGGCCCTTCTGTTGTGCTCAGAGATCCTCTCCCCGATCCCAGTGCATCGGTTACTACAGATCCTGGCAACTCCCGTGTTGAATCTCTTTCCATTACTGGTTGCAGTAACTCAGATTTAGTGCAAGGATTGTGGACTGAGCTACTGCCCAATATGTTGTCTCACTGTACCCGTATGACCCTAGGCTGGATGGTGCAGGGCGATTTCTCCCTGGCAACAGGAACTGGGGAGGCTTTAGGGTTTGTAAGCTTGGCGGGCCTCCTACAAACACTTCTCAGGCAATCAGCAGATCAGCGGGGCATCGTGCTTCTGCGCAATCCCACCTCCCTCCAGTACCGCTTTGCAAGACTCCATATAGAAGCCTGAAGCACTGCATAATCACTGCAGCACTACTGCACAAATGGATCAGCATCAGTACCTATATCAAGCTCAGTCTAGTGTACCAACACAGGTCTACATGTAagcttgttttgtttaatacagATCTGCATTAAGGCCTTTGGAATTTCTCCTTGGATAAAGGCTAGTTTTGCTGTAGAATTGTTATAAGTTTGAGGTGTTAgaccaaaatgttttttctggTACTATCTGTACTAATGCTTAAATTCTACCTTATTGCTACTATTTTCAGACCTGAAATATACATCAAATGAATGTGCCAGCAAGTCAGTGCTTCATGCTTTGAAACTTAAACTTTAATCCCATACTTCCAGTTTATAGCTGATAAAGTATATATCTATGCACTAATCTGGAGCATTGCAACTGAATGGGGTCTTAGTGACATGgcatgtttatataatttttttctctttataaaGAGAATTTAAGTAACAATGTATTGAAGCAGCTGATTTGTTCAGAGTTTTCATAAAAATGCTGTTAGTTTTTGGTTAAGTATAATACTGGCAATATCAATAAAATTGCTGCCAAAACCAGAAA
>XM_034298207.1
ACCCATGAGCAGCGCGTTGCGGAAGTGCTGCTACACGTGGTTTTTTAGCGCTGGCGTGCTGAGGACTGCAGGACAGGATCATTCTATACTCTTAGTTAATTAGGTATTCCTGATCAAACCAACATACACAATGTCGGGGGCCAAAGACAGAATGCGACATAAGAAAATGAGAAATCAGCCCAGTAATGTGACTTACTCGCACACAGGTCGCAGTTCCGAttcgcagcagcagcagcagatgaGGAGACTCCCACAGCATCCCAGCAGCTGGATGagggggcatcaggatggaggAGTTAGACATGAGCAGGCACTGCCCAAATACATCACTGCATCACTCTTTGCCAAAGCACGAGCTGCAGAAGTCAATGCCATGTTGAGGGCTGTCACAAAGACCACAGGTAGCTCTCAGGTATTTGGAGCTCTGCCAAAGCATATGCGCCGAAGAGCCATGAGCCACAACACCAAGAGATTGCCTTGCCGACTGAGAGAGATGGCACAGAGAATGAAGAGTCAGCAGGCagggaagaaagagaaaaaagagcagtCAAAGACCAAAAGTCGGCGTGCCCGCCGCCGCCATGGCAACTTGTTGCTGGAGTTCAACCGACGGCAGCGTAAGAATAAATGGTTAGAGACTCACATCTGGCATGCCAAGCGTTTTCACATGCTGAAGAAATGGGGCTACTGTCTTGGAGACCGACCCACATATAAGTGCTACAGAGCTAGCTATAGGGCCATGAATTCTGGCTGTCTGCTGCAGGACCTCTCATACTATTGTTGCGTGGAGCTCCATGGTCCAGAGGAACAACTACTGAATGCACTCTCCAGGCTGACCAGCAAAGACGCAGGCCCAACATTTGCAGCAGCATCATGTGTGTCAGGGCAGAAAGAGGGGAGTGTTATGCTTTACAAGGCTGATCAGTATCCTCACCAGCCCCTGGGCCCTGTGTGCTTCCTCTGGAGGCCTTGCAGTACTACATCACCTCACAGACAGCTGTGGATCTGGCTACATCCTTCCCTAAAACAGGATCTTCTACCAGAATTGCAGGCAGTGTGCCAGTGCTTTGAGGCAGTGGCTCCAGCTGTTGTAGAAGTGGTCCCATCAGAGAACCTGGCAGAAGCAAGTCCCATTCCACCTGCACCTTCTGACTTAAGCGCTGAGCCACAGTGTTccaagagaaagaggaaagtgGAAGCTGATGATGAGAATGGCTGCCCTGCCAAAAAAATTGTGGGTGATGGCACTCGATCACTTTCGACTCCTGTTAGTTGGATGTCCAGCACAACTGAGATTGTGATCAGTGATCTCACCATGGAAATAGTACGGTATCGTCTAATTGGTCCGCTCTCCCACTCTGTGCTGACTGAGATACTTGTACCGGCAACTGACTGTGAGagtAATATCAAAATGACTTCATCCCCTTTCTGGTGGCCAGAGGAGTGTAAGAAAGAGGAGAGCATGTCCCTACATCGCCAGCAAACAGATGTTTTTCAGCTCCTGAGAGGTGTATACTCTACGGCTGAGCTCCCAGCAGGGTGTGTTCTGGGGCTGACTGTAGATGACCCAAGACTGTCTTTGTCTGCAAAACGGGGAAAAGCTATGCCTGACCTTCACCAGACCCAAGGTGTTGACGAGGAAGGAAGAAGAAATTTGACACTGAGAGGAGTCCCTTCTCCCTGTGCTCAGAGTGCTCTATGGGAGAAGTCTGTCCGAGAGAACGTTACAAACAACAAGATTTCAGAACAGGATCTGAACAGGATGAAGAGGGAGTTGTTAGTTCCAGGCTCCAGGTTGCCGACCCCTGCACAGAGCCGAGTGCCAATTCTGCTGGTTAACCAGGCAGGGAAACAGCTGGGAGAGGAGCGGCTTGGATGGGGATCCGGTTGGGACTTGCTACTGCCCAAGGGTTGGGGCATGGCATTTTGGGTACCTTTGGTGTACTGTGGTGTACGTGTTGGGGGTCTCCAGATGAGTTTAAAACACTCCCAGAATAAAAGCGTGCCCCACTTTCCTCATGATTACCCAGACTGCCCTGCAGGTGTCCGCTTCCAGGAGCAGCAGGAGATCGAACTGCTGGAAAAGTTTAAGAGACACCCACCTTCCAAACGCACAAACTACATCAAATACGGCTGCGTGGCTCCTTTCTGGTGCCCATGGCAACAGCTGGTAGAGGAATGGGAGGAGAGAGTGAAACAACATGAAGACAACCAAGACTCTAAGACAGTTGAAATGAAAGACGTGACATCGCTTTCTCGAGATAGCCCAAACCCAGCATCTGCTTTTACTGTACTGAGGAGCCGTAAGGTGCTGAGGCAGCTGTCAGTCTGGTGTCGTCCATCTTCTTCCCACCCTCGGAGAGCGCCGAGTGGTTGTCGTGCCCCACCATTGTGCCCTACCATATCTCTGCAGGCAGAGTGGAAGCGGTGTTTGttgtgggtgcgtgtgtgtgctctgGGTAAGGGGCAGCCTGCACTTCATGCCATGCTTTGTGTGCCCACCACTGAGGACCTGCAACGCTTACGTGAAGACCCCCAGTGGAGTGGCCCCAAGGAACCGCAACACACAGACCACCTAAAGCACCAGCTGAAGAGGAAGGGCAAGAGAGGCGAGGCTGCACTATGCTGTTCTGCTCTTAAGAAAGAGCAAGACTGCAACATTCCTGAAAATGATGACGTTAGTTCTGCTTCCACGAAGGAAAAAAACCCTGAACTTGTCCCTATTAATCAACACTCTGGCCCTTCTGTTGTGCTCAGAGATCCTCTCCCCGATCCCAGTGCATCGGTTACTACAGATCCTGGCAACTCCCGTGTTGAATCTCTTTCCATTACTGGTTGCAGTAACTCAGATTTAGTGCAAGGATTGTGGACTGAGCTACTGCCCAATATGTTGTCTCACTGTACCCGTATGACCCTAGGCTGGATGGTGCAGGGCGATTTCTCCCTGGCAACAGGAACTGGGGAGGCTTTAGGGTTTGTAAGCTTGGCGGGCCTCCTACAAACACTTCTCAGGCAATCAGCAGATCAGCGGGGCATCGTGCTTCTGCGCAATCCCACCTCCCTCCAGTACCGCTTTGCAAGACTCCATATAGAAGCCTGAAGCACTGCATAATCACTGCAGCACTACTGCACAAATGGATCAGCATCAGTACCTATATCAAGCTCAGTCTAGTGTACCAACACAGGTCTACATGTAagcttgttttgtttaatacagATCTGCATTAAGGCCTTTGGAATTTCTCCTTGGATAAAGGCTAGTTTTGCTGTAGAATTGTTATAAGTTTGAGGTGTTAgaccaaaatgttttttctggTACTATCTGTACTAATGCTTAAATTCTACCTTATTGCTACTATTTTCAGACCTGAAATATACATCAAATGAATGTGCCAGCAAGTCAGTGCTTCATGCTTTGAAACTTAAACTTTAATCCCATACTTCCAGTTTATAGCTGATAAAGTATATATCTATGCACTAATCTGGAGCATTGCAACTGAATGGGGTCTTAGTGACATGgcatgtttatataatttttttctctttataaaGAGAATTTAAGTAACAATGTATTGAAGCAGCTGATTTGTTCAGAGTTTTCATAAAAATGCTGTTAGTTTTTGGTTAAGTATAATACTGGCAATATCAATAAAATTGCTGCCAAAACCAGAAA

Function


symbol description
pop1 Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA processing. Predicted to act upstream of or within tRNA 5'-leader removal. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Human ortholog(s) of this gene implicated in anauxetic dysplasia 2. Orthologous to human POP1 (POP1 homolog, ribonuclease P/MRP subunit).

NR:

description
PREDICTED: skin secretory protein xP2-like

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process

KEGG:

id description
K01164 POP1; ribonuclease P/MRP protein subunit POP1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026924756.2 True 3679 mRNA 0.49 16 8286243 8298470
XM_034298207.1 False 3673 mRNA 0.49 16 8286243 8298470
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Neighbor


gene id symbol gene type direction distance location
mrpl17 mrpl17,LOC107657704,LOC107699486,LOC107595760 coding upstream 17280 8265019 ~ 8268963 (+)
LOC113532619 ahrr coding upstream 35420 8218540 ~ 8250823 (+)
LOC113533036 anks6,LOC103376383 coding upstream 71414 8196241 ~ 8214829 (+)
LOC113532572 LOC108256701 coding upstream 95984 8184092 ~ 8190259 (+)
cdh17 LOC108256708 coding upstream 129950 8140082 ~ 8156293 (+)
LOC113532920 kcns2 coding downstream 32181 8330651 ~ 8334727 (+)
LOC113532557 LOC108256723 coding downstream 260097 8558567 ~ 8579074 (+)
atp6v0a1b LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 coding downstream 378885 8677355 ~ 8745970 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding downstream 541096 8839566 ~ 8851316 (+)
tfap2a tfap2a,LOC107664660 coding downstream 695316 8993786 ~ 9005220 (+)
G328995 pigm non-coding upstream 22207 8257525 ~ 8264036 (+)
G328944 NA non-coding upstream 69589 8216446 ~ 8216654 (+)
G328755 NA non-coding upstream 150080 8135517 ~ 8136163 (+)
G328754 NA non-coding upstream 150788 8135080 ~ 8135455 (+)
G328750 NA non-coding upstream 180781 8105262 ~ 8105462 (+)
G329042 NA non-coding downstream 37882 8336352 ~ 8336582 (+)
G329126 NA non-coding downstream 395933 8694403 ~ 8699160 (+)
G329288 NA non-coding downstream 450350 8748820 ~ 8749033 (+)
G329354 NA non-coding downstream 644408 8942878 ~ 8945556 (+)
G329361 NA non-coding downstream 674767 8973237 ~ 8973587 (+)
LOC113532663 NA other upstream 383635 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 1038964 7224022 ~ 7247279 (+)
G326997 NA other upstream 2947992 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2971629 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 3296927 4984415 ~ 4989316 (+)
osr2 osr2,LOC106591507 other downstream 74215 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 89717 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 316603 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 470275 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 552934 8851404 ~ 8922793 (+)

Expression


pop1(pop1) Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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pop1(pop1) Expression in each Bioproject

Bar chart with 3 bars.
pop1(pop1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network