slc25a40 (slc25a40,LOC107666862,LOC107592430)


Basic Information

Item Value
gene id slc25a40
gene name slc25a40,LOC107666862,LOC107592430
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5391417 ~ 5400856 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924770.2
TAACTACAACATGCCCACTGTCATGTGCAGGTTAAAGAAAACGTGAACTTCCAGTCGGCTACATGCCACAGTTAGAGGGTTTGCAGGGCtgttgcaggttttttttgtccGATTTAGACTACCTGTACGTTGCTCTAATGCTGTCATCGTGGAGATATATTTAAATCTGAGTGAACATTATAAGAATTGCATGATTAGTGTAAGTTTCTATTTATCTCTAGCTAGAGAAACAGCTCCAGGACACAGTAAATGATATGAAAGGGTTGTTGAGGATCACTGGACTGGATTTCGGTGAGGAGTTCACTACAAGGGAACAGAAAAGTTCTCGGATTGATTACAAACCTCAAGAAAGACTAAACCAAGGCTGGTTGAGATGACTTCTCAGACTTTTCAGGCCAACATGGACAGTATAACACCAGTTCAGCAGATGGTGGCTTCTTGTTCTGGGGCTTTGCTCACATCATTGTTTGTAACTCCATTGGATGTCATAAAGATCAGACTCCAGGCACAGAGAAGTCCTTTATATAAaggtaaatgttttgtgtattgCAATGGCCTGATGGATCATATATGCGTGTGTGAAAACGGGAATGTAAAAGCGTGGTACAAACCTCAGGGTCATTTCAACGGCACACTGGATGCCTTCATCAAGATTGTACGCATGGAAGGGATCAAGTCGCTGTGGAGTGGCCTTCCTCCAACACTAGTTATGGCAGTTCCAGCTACAGTGATATACTTCACCTCTTATGACCAGCTCTGTGCTGCTCTCAGGCACCGGATGGGGGAAAGATCAGACCTGGCACCGCTATTAGCTGGAGCAATAGCTAGAGTGGGCTCCGCTACTCTGATCAGTCCGCTAGAGCTGATCCGCACTAAGCTGCAGTCAGAGAGACAGTCATACAGAGAGCTGAGCGCCGTGATCCGCTCGGCCGTACACACTGAAGGCTGGCTCGCTCTCTGGAGGGGTCTCGGGCCCACGCTGCTCAGGGATGTACCAttttcagCCATGTACTGGTACAACTATGAGAAAGGTAAAGCCTGGCTGTGTCACTACAACAAGACGACTGAGCCGACCTTCAGCATCGCCTTCATCTCAGGAGCAGTGTCCGGCTCTatTGCGTCAATTGTAACGCTGCCGTTTGATGTGGTGAAGACCAGGAGGCAGGTGGAACTGGGTGAACTGCAGGCTAGGAAATTAGTGTCATCTCAAGCCTCGTGTTCAACCTATACAGTGATGAAAAGAATCGTGGCAGAGAGCGGCATCCAAGGACTGTTTGCGGGTTTCATGCCTCGGCTGATAAAAGTGGCTCCAGCCTGTGCTATAATGATAAGCACTTATGAGTTTGGCAAGGCCTTCTTTCGCAAACAGAACCAGAAGGACAGACCAGTTCTCACACTGCATACCACCAACACCTAATCACTCCATCTGTCATACACTCTTTAtaactttaaacacacacacacacacacacgcacacgatTGCTTCAGCTAGGACCTGAAACCATCCTGCAAACACTCATCTAGTTATAATGAATCATGAGCAAGCTGAATAACGTTGGCCTTTTGGTACGGATTCGGACGGGAACAGCAGTACATAAATTCCATGTGTGAAGAAATTTTGGCACCCTAAATACCCTCAAGTTAAGctttatgcataaaaaaaatcacccaacTCTGATAAACCTgcatga
>XM_026924771.2
TAACTACAACATGCCCACTGTCATGTGCAGGTTAAAGAAAACGTGAACTTCCAGTCGGCTACATGCCACAGTTAGAGGGTTTGCAGGGCtgttgcaggttttttttgtccGATTTAGACTACCTGTACGTTGCTCTAATGCTGTCATCGTGGAGATATATTTAAATCTGAGTGAACATTATAAGAATTGCATGATTAGTGTAAGTTTCTATTTATCTCTAGCTAGAGAAACAGCTCCAGGACACAGTAAATGATATGAAAGGGTTGTTGAGGATCACTGGACTGGATTTCGGTGAGGAGTTCACTACAAGGGAACAGAAAAGTTCTCGGATTGATTACAAACCTCAAGAAAGACTAAACCAAGGCTGGTTGAGATGACTTCTCAGACTTTTCAGGCCAACATGGACAGTATAACACCAGTTCAGCAGATGGTGGCTTCTTGTTCTGGGGCTTTGCTCACATCATTGTTTGTAACTCCATTGGATGTCATAAAGATCAGACTCCAGGCACAGAGAAGTCCTTTATATAAaggtaaatgttttgtgtattgCAATGGCCTGATGGATCATATATGCGTGTGTGAAAACGGGAATGTAAAAGCGTGGTACAAACCTCAGGGTCATTTCAACGGCACACTGGATGCCTTCATCAAGATTGTACGCATGGAAGGGATCAAGTCGCTGTGGAGTGGCCTTCCTCCAACACTAGTTATGGCAGTTCCAGCTACAGTGATATACTTCACCTCTTATGACCAGCTCTGTGCTGCTCTCAGGCACCGGATGGGGGAAAGATCAGACCTGGCACCGCTATTAGCTGGAGCAATAGCTAGAGTGGGCTCCGCTACTCTGATCAGTCCGCTAGAGCTGATCCGCACTAAGCTGCAGTCAGAGAGACAGTCATACAGAGAGCTGAGCGCCGTGATCCGCTCGGCCGTACACACTGAAGGCTGGCTCGCTCTCTGGAGGGGTCTCGGGCCCACGCTGCTCAGGGATGTACCAttttcagCCATGTACTGGTACAACTATGAGAAAGGTAAAGCCTGGCTGTGTCACTACAACAAGACGACTGAGCCGACCTTCAGCATCGCCTTCATCTCAGGAGCAGTGTCCGGCTCTatTGCGTCAATTGTAACGCTGCCGTTTGATGTGGTGAAGACCAGGAGGCAGGTGGAACTGGGTGAACTGCAGGCTAGGAAATTGTCATCTCAAGCCTCGTGTTCAACCTATACAGTGATGAAAAGAATCGTGGCAGAGAGCGGCATCCAAGGACTGTTTGCGGGTTTCATGCCTCGGCTGATAAAAGTGGCTCCAGCCTGTGCTATAATGATAAGCACTTATGAGTTTGGCAAGGCCTTCTTTCGCAAACAGAACCAGAAGGACAGACCAGTTCTCACACTGCATACCACCAACACCTAATCACTCCATCTGTCATACACTCTTTAtaactttaaacacacacacacacacacacgcacacgatTGCTTCAGCTAGGACCTGAAACCATCCTGCAAACACTCATCTAGTTATAATGAATCATGAGCAAGCTGAATAACGTTGGCCTTTTGGTACGGATTCGGACGGGAACAGCAGTACATAAATTCCATGTGTGAAGAAATTTTGGCACCCTAAATACCCTCAAGTTAAGctttatgcataaaaaaaatcacccaacTCTGATAAACCTgcatga
>XM_034298176.1
TGAAAATGAAGATAACTACAACATGCCCACTGTCATGTGCAGGTTAAAGAAAACGTGAACTTCCAGTCGGCTACATGCCACAGTTAGAGGGTTTGCAGGGCtgttgcaggttttttttgtccGATTTAGACTACCTCTAGAGAAACAGCTCCAGGACACAGTAAATGATATGAAAGGGTTGTTGAGGATCACTGGACTGGATTTCGGTGAGGAGTTCACTACAAGGGAACAGAAAAGTTCTCGGATTGATTACAAACCTCAAGAAAGACTAAACCAAGGCTGGTTGAGATGACTTCTCAGACTTTTCAGGCCAACATGGACAGTATAACACCAGTTCAGCAGATGGTGGCTTCTTGTTCTGGGGCTTTGCTCACATCATTGTTTGTAACTCCATTGGATGTCATAAAGATCAGACTCCAGGCACAGAGAAGTCCTTTATATAAaggtaaatgttttgtgtattgCAATGGCCTGATGGATCATATATGCGTGTGTGAAAACGGGAATGTAAAAGCGTGGTACAAACCTCAGGGTCATTTCAACGGCACACTGGATGCCTTCATCAAGATTGTACGCATGGAAGGGATCAAGTCGCTGTGGAGTGGCCTTCCTCCAACACTAGTTATGGCAGTTCCAGCTACAGTGATATACTTCACCTCTTATGACCAGCTCTGTGCTGCTCTCAGGCACCGGATGGGGGAAAGATCAGACCTGGCACCGCTATTAGCTGGAGCAATAGCTAGAGTGGGCTCCGCTACTCTGATCAGTCCGCTAGAGCTGATCCGCACTAAGCTGCAGTCAGAGAGACAGTCATACAGAGAGCTGAGCGCCGTGATCCGCTCGGCCGTACACACTGAAGGCTGGCTCGCTCTCTGGAGGGGTCTCGGGCCCACGCTGCTCAGGGATGTACCAttttcagCCATGTACTGGTACAACTATGAGAAAGGTAAAGCCTGGCTGTGTCACTACAACAAGACGACTGAGCCGACCTTCAGCATCGCCTTCATCTCAGGAGCAGTGTCCGGCTCTatTGCGTCAATTGTAACGCTGCCGTTTGATGTGGTGAAGACCAGGAGGCAGGTGGAACTGGGTGAACTGCAGGCTAGGAAATTAGTGTCATCTCAAGCCTCGTGTTCAACCTATACAGTGATGAAAAGAATCGTGGCAGAGAGCGGCATCCAAGGACTGTTTGCGGGTTTCATGCCTCGGCTGATAAAAGTGGCTCCAGCCTGTGCTATAATGATAAGCACTTATGAGTTTGGCAAGGCCTTCTTTCGCAAACAGAACCAGAAGGACAGACCAGTTCTCACACTGCATACCACCAACACCTAATCACTCCATCTGTCATACACTCTTTAtaactttaaacacacacacacacacacacgcacacgatTGCTTCAGCTAGGACCTGAAACCATCCTGCAAACACTCATCTAGTTATAATGAATCATGAGCAAGCTGAATAACGTTGGCCTTTTGGTACGGATTCGGACGGGAACAGCAGTACATAAATTCCATGTGTGAAGAAATTTTGGCACCCTAAATACCCTCAAGTTAAGctttatgcataaaaaaaatcacccaacTCTGATAAACCTgcatga

Function

symbol description
slc25a40 Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A40 (solute carrier family 25 member 40).

NR:

description
PREDICTED: solute carrier family 25 member 40

GO: NA

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924770.2 True 1692 mRNA 0.46 11 5391417 5400844
XM_026924771.2 False 1689 mRNA 0.46 11 5391417 5400844
XM_034298176.1 False 1607 mRNA 0.47 12 5391417 5400856

Neighbor

gene id symbol gene type direction distance location
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding downstream 41584 5332129 ~ 5349833 (-)
rpp38 rpp38 coding downstream 82313 5307441 ~ 5309104 (-)
si:dkey-65b12.6 LOC108256587 coding downstream 175117 5205561 ~ 5216300 (-)
LOC117595762 NA coding downstream 212399 5178282 ~ 5179018 (-)
LOC117595761 NA coding downstream 222791 5167096 ~ 5168626 (-)
cldn12 cldn12 coding upstream 57377 5458233 ~ 5463036 (-)
washc5 kiaa0196,strumpellin coding upstream 92373 5493229 ~ 5512596 (-)
LOC113532914 LOC108256385,LOC108440755,LOC103044808 coding upstream 113986 5514842 ~ 5522545 (-)
LOC113532747 atad2 coding upstream 121937 5522793 ~ 5540977 (-)
psma2 psma2,si:rp71-45k5.4,LOC108440756,LOC107592434,LOC107686300,LOC103045926,LOC107714337,LOC107724313,LOC108425697 coding upstream 140501 5541357 ~ 5546339 (-)
G326995 NA non-coding downstream 76762 5314207 ~ 5314655 (-)
G326989 NA non-coding downstream 81152 5310049 ~ 5310265 (-)
G326981 NA non-coding downstream 96185 5294732 ~ 5295232 (-)
G326960 NA non-coding downstream 134141 5257051 ~ 5257276 (-)
G326958 NA non-coding downstream 135406 5255795 ~ 5256011 (-)
G327362 NA non-coding upstream 337681 5738537 ~ 5739588 (-)
G327505 NA non-coding upstream 435214 5836070 ~ 5836306 (-)
G327507 NA non-coding upstream 436633 5837489 ~ 5837782 (-)
G327508 NA non-coding upstream 437027 5837883 ~ 5838277 (-)
G327560 NA non-coding upstream 682510 6083366 ~ 6084649 (-)
ubr5 ubr5 other downstream 413890 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 1044164 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1425302 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1595049 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1986999 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 428618 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 855547 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1655938 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 1977875 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4750641 10151497 ~ 10156800 (-)

Expression


Co-expression Network