LOC113533022 (fxyd1,LOC108433901,LOC108256298,LOC103360964,LOC107728489)


Basic Information

Item Value
gene id LOC113533022
gene name fxyd1,LOC108433901,LOC108256298,LOC103360964,LOC107728489
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1650037 ~ 1667737 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924811.2
agagagagagagagagagagagagagagagagagagagagagacctgttGAGGTGTCACTAGGGTAAAAAAGGGTGTTGGTTTGGACTTCTTTAGCTTGTTAGCTTGTTAAAACCTGTCTAACGAGTCTAACCAGGTCGGGAACCCGAGCACATCTCGTGCATAACGCTCGCGCTGAGGTCAAGCCACGTCGCCATGGCACAGATTCTATCACTCATCTTAATCACATTTTTCACCCTCATCTTGGCAGAGGATCAGCAGCCAAAGGATGATCCGTTCACTTTCGatTATCACCGGCTGCGTGTTGGAGGGCTGATCATGGCCGCGGTGTTGTGTCTGATCGGCATTACTATCCTCCTCAGTGGACACTGCAGATGCAAATTTAACCAGGACAAGAGGAGGAGGACAGGAAGTAACGCAGCGACCCAACAGATGCTCAATGACACAGCACGGGCCAGTGAATGTTAAACGCTCCTGTTGGACTACTCAGTGTCAATCTGACTGACGGAGAAGAGTGAAGATCCTGCAGTACCTTTATTCCACTAAAAATGTCCCGGTTTAAAACAGTGAACAAAACAATGGGCcctttattatattaatgttattattattattattattattattattattatattccaCCTGTTTGCTGCTTACATGGCTGCTCGTCTGGAAAAATCGTCCCTGTACTTTTGTCAGATGTTCATTTCAACTAACTGAAccaataaccaaaaaaaaaaaactcttgtttGTGTGGAAATCGCCAGAATgtgagtttttgtgtttttaacgTGTTTACTAAAatgtcctcttttttttttttaagatcctGTTGATCAGTTTTAGTCACATGACAGCTTATAACCAAAAAGTACAAGCAATCTGTCCACACGTTGTTTCCTTTCAGTGCTGATAATGTAATCTACAGTGTTATGTTACGCTTCATAGTTGAGTGtttgacaaataaaacatttaattctgatttAATAACTACCTGTTTTTATAGATCCTCAGCTTCTAGCAGGTTGTTCATCATGGTCGTGTCactgtttcttattttttaaaaagaaatttgtcCACATTGCTGACTAAAACACTAAAACGA

Function

symbol description
fxyd1 Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in negative regulation of protein glutathionylation; regulation of cardiac muscle cell membrane potential; and regulation of sodium ion transmembrane transport. Predicted to be located in several cellular components, including T-tubule; caveola; and intercalated disc. Predicted to be part of sodium:potassium-exchanging ATPase complex.

GO: NA

KEGG:

id description
K13361 FXYD3, MAT8; FXYD domain-containing ion transport regulator 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924811.2 True 1104 mRNA 0.40 8 1650037 1667737

Neighbor

gene id symbol gene type direction distance location
LOC113532527 NA coding downstream 11418 1631443 ~ 1638619 (-)
LOC113532853 atp4a coding downstream 23477 1608001 ~ 1626560 (-)
gapdhs g3pt,gapdhs,LOC107577408,LOC107709572,LOC107686531 coding downstream 43348 1593470 ~ 1606689 (-)
LOC117595786 LOC108256309,LOC108256308,LOC108261853 coding downstream 59850 1577798 ~ 1590187 (-)
zgc:158766 LOC108256307,LOC107601962 coding downstream 120636 1486378 ~ 1529401 (-)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 18966 1686703 ~ 1708246 (-)
si:dkey-33i11.1 fcgr2a coding upstream 46538 1714275 ~ 1718593 (-)
rgl2 LOC108256293,LOC108433895 coding upstream 67880 1735617 ~ 1763406 (-)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding upstream 285093 1952830 ~ 1976952 (-)
LOC113532949 apoa2 coding upstream 342452 2010189 ~ 2011797 (-)
G324726 NA non-coding downstream 463960 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 480706 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 522420 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 694645 880609 ~ 955392 (-)
G324650 NA non-coding downstream 767751 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 1365 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 56273 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 79920 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 229974 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 239206 1906943 ~ 1948211 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 81531 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 199037 1403264 ~ 1451000 (-)
G324748 NA other downstream 279008 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 307966 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 547920 1043313 ~ 1102117 (-)
G325145 mtmr11 other upstream 420522 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1562284 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1651807 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 2052952 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 2289760 3957497 ~ 3966115 (-)

Expression


Co-expression Network