rpgrip1


Basic Information

Item Value
gene id rpgrip1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8589264 ~ 8646509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924820.2
ACTAGTGCTAACTATTATCAGTAGaacttttgtgtctgtgtgttccaGATGCTACAGAagccaaataaacaaaatgtcacTGAGTATGGATGGCAGGTAGGGATATTCCAGTGAGAGATCTGAGATCTGAAAGGAGGATCCATGCCTGTCATTcaagAACAAGATGTGCGGTCCTCAAGAAGAAGACCACAGGTCCTGAAAAGTCAAGATCTTCAGTGTGTATCCAAGTTAACATGGAAGCAGCTTGAGGACCAATATCTCTGTCTACAGGAGGAGATCACACTCCTCAAACAACATGTTCAAATACTAGAATGGAAGTTACACAGGTTCTCCACTAAATTGTCAAAGCTGAGGAACGGACATTCTGGTTTGGCTGGGGGGCAAAATGTTGAAGCTAAAGACACTATTGAAGAGCTGAAGGATCGTGTAGCTACTCTGGAGAGCCAGAAGGAGGTGTTGCAGAGAAAACTTATCATGGCCAGACAGCAGATCCTGGCTCTGGGCAGACATACTCACCAAAGTCCACGCATGGGACGGGGTGTACAACCAGAGGGAGAAGTCACACAGACATCTCAAACAGTCCCAGCTCACTATGCACTCAGCTCCATGGATGATTACAAAGGACAGACTGAAAGATTTTTTACAGAACCACAGCCAGTGAGGTTAACAGAGCTTGACCTGGCTATTCACTCCCTCAGAGAGACCTTTACACTAAAGGAGAAAGAATTAGAATACCCAATGAAAGAACTGCACAAACAGCAAATTGATGGACTCAGACTTACCATAAAAGATAATGTAGATGTGATCAGACTGCAGAAACAGCTGTCTAATGAAAGGACTGCTGTTTTGGTCATTAAGGATaagtttacagttttaaaacagGCTTATGAGACCCAGCTGGAAGAGggCCAGAGGTCACTGCAGGAGAGCCAGGTGACCTTGCTGGGAAAGTTGGGGCAGCTGAGTGAGCAACTGAAACAGGAAAAGCATAAGGCACTGAGCCTAGAGGGTCAGCTTTATACTGCCACTATCTCGCTGCACAGCTTGGCAGAGCTTCAGGAGAGGGTCTCAGACATTGAAGGGGAGAGAAATCTCCTGAAGAAGAGCTATAATGCTCTGCTGCTGAGCACTCTGTCTGCCCAAAGCCACCATAATGAAcatgagagtgaaaaagagagtgatAGACAGGAAGTGGAGAACTGGAGAGCTGAAATGTCCATACTGGAGAAGAAGCTGGAAGAtgaaaaaagggagagagaaatgctggagcaggaaaaaaagagggTGGTGCAAGACTATGAAAGGAGTCAAATGGAAAGAGCACAAGAAAGGGCCATTACCACTACCCTTAGAGAAAAACATGACTTCCTGGAGCAAGAAGTGTTACACTACAGACAGAATGTGACATCCCTACAAGAGAGACTagacagaatatcaaaaGATTTTCATATGGATGTGGAAGGCCTTAGTGAAATTCTGATGCAGATTAAGGCTTTTCGACTGCATCACGAGAGTTGTAAGGGTCTGACAGTCCTGGTGAGTAATGAGAAGGTCAAGAACCCATCACGAGAACTGTCTACTCTACAGGTTTCATATGCAGAAACCATACTAGAGCTGCAGAAAACTCGGGAATTGTTGGTAATGCAACATAGGCTCAATAGTGACCTGCAGGCTGACATGAagatagagaaggagagagcagaaagggaaaaagaacGGAAAAGAAGGGAGGTCATTGAAAAAGACAAACTGTTGAAAAATAGGGCTCTTCAAATCAACAGTTTACAAGCTCAGCTGAGAGACTTAACTTACTGTCCTAGAAACTACAATcagattataccacagcaatacaCATGGACAGGGGTGGATCAGGAGATAGTCCAGATGATGGAGGGGAATACCATACTAAATCAGCTCCAGGATGCAGGATCCTTGCTTGAAATCAGTCTCATGGGAGCCATGTTCACCCCTGTGGGACTGAGACTCATGAGACAGCAGAGAGGTGTGGATACCAGTGGTCCCCATCAGGTGGTGACATTTTGTACCTACACATTCCTTGATTTTGAAATGCAGTCAACCCCACTGGTTTCAGGGACACAGCCAAACTATGGCTTCACATCCTGCTATGTCCTCACTGGCCACAACTCCACCAAGCTTGAGGGTCAAGGGGTGTTTGCACATGTTGAAGTACATCAGGCACTAGGAGGAGTGCAATTCATAACGCAGGGCAGAGCAATAATCCCCCTAATACAAACACTACAGCACAAAGGAGAAAAAGTAAAAGGGAGAGTCAACATTACAGGATCCAAGGGGGAGATAATAGGGGTCCTGGAATTCTGGGTCCGTCTGATCTCTGAAGTGGAGCCAAAAGATATTCAAACAGATAGAATGACAGAACAAATGATGGATGGCATGACTGACCGATTGCCCATAGACAGAGCTTTATACTGGAGTCACATACAGCCTGAAGAATTATATGAGTATGGTGGACCGTTATGCAATGAGTTGGTGGTGGTACTGGAACGCTGTGTGGGAGTATGCTGGCGAGGACTTCATCCTGATGCTTATTTAATTCATCGTCTGTATGATCTACCCCCTTATTCCACTCCTACAGTACCGATCTATACAGACCCTTTGTTTACAGACTCTACCACCTACCCATTAACTGTTACACCAGATCTGATTGAATACCTAAAGAAGAGAAGCCTATGGGTATATATGATTGATGACAGCAAAGGCCAGAGTCCTACTACTTACCTGGCCAAGACACCAGTGCCACTGCAGGCCCTAATAACAGGCAGGCCAATTAAAGGTAGTTATGTCCTGAGGGACCCTGCAGGGGTTCCTAGAGGCATAGTGAGGGTGCATATCCAGTGGAGGTACCCATTCCAGTCACCTGAGGCCCTATCCAGACcaacacaaaaaaggaaaacagagagGGATGGAAAGCGGCTCAAAAACATTGAAGATAAAACTCAAGTGTCACCGAGGTCAATTGCAAAGCTGAgaCCAGGGCCTTCCAATCTTCCTCTCAAAATGCATAGTCCTGCAAGATCAGAGCAACCCCACTTTCCTACACCCAAGTTGCCTCCAAGAGAACCAGGAGCTAAATCGATACATTTTCCAATTTACAACCAAACCTGTCATACAAGGTCATTCAACCACAGTCTGAACATGCTTGACTCTGATCACACCTCAACTAGCAACAAGCAAAGGAGCTCAAGACATCATTCAAAgGCAATGGAACAAGAAGACAAGGAGAAGGGACAAGACGAATCCCAGTCTGTAAGTCTGAGAGATCAACTGGACAGTGTTCTAGAATCTATGGAATCCACCACCCCTAGTGACAGTGATATTATCATTCCCCAGCCTCAAAAACATGTCAAAGAGGGCTACCGACTTAAAGTTGAGATCTTATCACTTTTGTTTGACCCTTCCTCAAGTGTTGCTTTAGACCAATCTGTGCAGCAAGTTTATGTGGAGTACCGCCTCTCAGGCATTCCCATGGAAACCACAGAGACCCCCATGTCTCTGCAAAAACCAACTGAGGGGGAAGAAATACATTTCAACTTCAGCAGAGtCATACACGTTGACACCACGGAGGCATCTCCTCTGAGGCAGTACCTCTATACTATACTGGAAAGGACTGATGCTAAACAGGGCAGGTTAAAGTTCACTGTGGTCAGTGAGCCGTTGAATGAGGAAGATGAATGTGTGGATGTTGGCCATGCCTACTTGGACTTGCAGGAACTACTTCTTACAGGGAATGATGTAATTGAACGCCAAATTGATAttaTCAGAATGGATGGTGATCAAGAGGTGGTGGGGAGTCTGAGAGTGTCTTTAGAGGCTGCACAAGCTTTAACAGGAATCTCCTGGGAGTACCCCAACTAGGAAGAGTggaaagagagaaggacagaggcACAGGAAACAGAGCAAAGGAAGAGGCAAAAAAAGAGTAATAAATCAAGAAAAGGAGATCCAAGTTATTGAGCTTGATTAATTTATCTGAAAATCCTAAATAAATTCTTTGACAGTGATATCAATAAGTGGTTGTTTTATACACAATGTAAAGAAAGAGTTTAAAGCTGGTGTAAGCAGTATAGCCTCCAAAGGAATCaccctccatctctcagtctCAAACAGTCTATCCATACCTCGACAAGTGCACAGTGTAATGTGCATGTAGATTTAGATGTAACATCATGACCCAGGAAATGCCAGTGGGGGTACAGGCTTTTATTATAtgacatatattacattttattagatATATGAAATTAATGATATAGTTCAAACCAAGTACAGTGAGAACACACACCCATTGACGGAGTGCTCAGTAAACCAGGAGCTGATTTTCCATACCTTTTTTCCTCTGTCGAGCCATTTTTGCTCCCTCAGAGAGATATTCAGCTTTCACAATCCCCTGTCATCTAACTAGCAGGCTTGCGGCATGAGAATCAGAAACCAAAAAAGGTAAAAGGATTGGTGAGATGGCACCCTCAAATTGCCACAATCTGGCATATTGGCTAGGCACCCACATACACCTATCAGTCAcaccattaaaaccactgacaggtgaagttgatgtgttggaagcaggaaaaatcggcaagtgtaaggatctgagtgacattgacaagggccaaattgtgatggctagacgacttgGTCAGAGCATgcccaaaacggcaggtcttgtagGGGTGTttccagtatgcagtggttagtacctaccaaaagtggtccaaggaaggacaactgcgGATCTGGCGACAGGGttatgggcgcccaaggctcattgattcccatggggagcaaaggctagcccattGGGTCccatcccacagaagagctactgcagCACAGCAACTGGTGAAAAAAGTTAATGcaggctatgatagaaaggtgtcagaacacacagttcatcgcagcttgctgtgtatggggctgcatagccgcagactggtaagagtgcccatgctgacacCTGTCCACAGCCAAAAGTACCTACAAGGGGCAcatgaacatcagaactggaccgtgGAGGAAGAACAtggcctgatctgatgaatcacatttacttttacatcatgtggaaggccaggTAAGGGTGTATTGCTTACCCGGGGAAGAGATAGCACCAGGatacactatgggaagaaggcaaaccgggagaggcagtgtgatgctctgggcaatgttctgctgggaaaccttgggt

Function

NR:

description
PREDICTED: protein fantom-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924820.2 True 5224 mRNA 0.45 26 8589264 8646509

Neighbor

gene id symbol gene type direction distance location
LOC113532599 nipal2,LOC107731686,LOC107594621,LOC107705020 coding downstream 267104 8308408 ~ 8322160 (-)
fzd6 fzd6 coding downstream 304544 8273940 ~ 8284720 (-)
pigm pigm coding downstream 325204 8252752 ~ 8264060 (-)
hus1 hus1 coding downstream 408866 8167058 ~ 8180398 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107593682,LOC107687812,LOC107723551 coding downstream 425000 8158372 ~ 8164264 (-)
cavin1b LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710 coding upstream 5923 8652432 ~ 8665855 (-)
si:dkey-197c15.6 NA coding upstream 184338 8830847 ~ 8836831 (-)
txndc5 txndc5 coding upstream 297876 8944385 ~ 8955194 (-)
bloc1s5 bloc1s5 coding upstream 316263 8962772 ~ 8967175 (-)
mak mak coding upstream 804865 9451374 ~ 9472412 (-)
LOC117595772 NA non-coding downstream 13140 8573144 ~ 8576124 (-)
G329049 NA non-coding downstream 237623 8351232 ~ 8351641 (-)
G329039 NA non-coding downstream 255088 8333831 ~ 8334176 (-)
G328942 NA non-coding downstream 374010 8212756 ~ 8215254 (-)
G328908 NA non-coding downstream 455377 8133683 ~ 8133887 (-)
G329290 NA non-coding upstream 104333 8750842 ~ 8751044 (-)
LOC117595776 NA non-coding upstream 176681 8823190 ~ 8838994 (-)
G329404 NA non-coding upstream 200976 8847485 ~ 8851312 (-)
G329438 NA non-coding upstream 273771 8920280 ~ 8921013 (-)
G329447 NA non-coding upstream 295628 8942137 ~ 8942358 (-)
sec61b sec61b,LOC102796100 other downstream 1202917 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1526836 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 2205676 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 2610885 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 3611737 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1504988 10151497 ~ 10156800 (-)
G330185 NA other upstream 1876223 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 2276617 10923126 ~ 10930775 (-)
G330379 NA other upstream 2435759 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 3297545 11944054 ~ 11996700 (-)

Expression


Co-expression Network