Gene
RNA
| Item | Value |
|---|---|
| gene id | rims2a |
| gene name | rims2a,rims2,LOC108256727,LOC107095553,LOC107556969,LOC108438094 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 6094031 ~ 6288364 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| rims2a | Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Is expressed in nervous system and pancreatic system. Orthologous to human RIMS2 (regulating synaptic membrane exocytosis 2). |
| rims2 | Predicted to enable transmembrane transporter binding activity. Predicted to be a structural constituent of presynaptic active zone. Involved in positive regulation of dendrite extension. Located in extracellular exosome. |
| description |
|---|
| PREDICTED: regulating synaptic membrane exocytosis protein 2-like isoform X4 |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| K15297 | RIMS2, RIM2; regulating synaptic membrane exocytosis protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026924856.2 | False | 3380 | mRNA | 0.42 | 6 | 6094031 | 6101692 |
| XM_034297898.1 | True | 7367 | mRNA | 0.49 | 36 | 6094031 | 6288364 |
| XM_034297899.1 | False | 7364 | mRNA | 0.49 | 36 | 6094031 | 6288364 |
| XM_034297900.1 | False | 7355 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297901.1 | False | 7346 | mRNA | 0.49 | 36 | 6094031 | 6288364 |
| XM_034297902.1 | False | 7340 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297903.1 | False | 7334 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297904.1 | False | 7331 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297905.1 | False | 7328 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297906.1 | False | 7319 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297907.1 | False | 7301 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297908.1 | False | 7301 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297909.1 | False | 7298 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297910.1 | False | 7295 | mRNA | 0.49 | 34 | 6094031 | 6288364 |
| XM_034297911.1 | False | 7270 | mRNA | 0.50 | 34 | 6094031 | 6288363 |
| XM_034297912.1 | False | 7268 | mRNA | 0.49 | 34 | 6094031 | 6288364 |
| XM_034297913.1 | False | 7262 | mRNA | 0.49 | 34 | 6094031 | 6288364 |
| XM_034297914.1 | False | 7262 | mRNA | 0.49 | 34 | 6094031 | 6288364 |
| XM_034297915.1 | False | 7253 | mRNA | 0.49 | 35 | 6094031 | 6288364 |
| XM_034297916.1 | False | 7241 | mRNA | 0.49 | 36 | 6094031 | 6288364 |
| XM_034297917.1 | False | 7229 | mRNA | 0.49 | 33 | 6094031 | 6288364 |
| XM_034297918.1 | False | 7220 | mRNA | 0.49 | 34 | 6094031 | 6288364 |
| XM_034297919.1 | False | 7192 | mRNA | 0.49 | 35 | 6094031 | 6288363 |
| XM_034297920.1 | False | 7174 | mRNA | 0.49 | 35 | 6094031 | 6288363 |
| XM_034297921.1 | False | 7148 | mRNA | 0.49 | 34 | 6094031 | 6288364 |
| XM_034297922.1 | False | 7144 | mRNA | 0.49 | 34 | 6094031 | 6288363 |
| XM_034297923.1 | False | 6672 | mRNA | 0.49 | 30 | 6094031 | 6235674 |
| XM_034297924.1 | False | 6419 | mRNA | 0.49 | 30 | 6094031 | 6221863 |
| XM_034297925.1 | False | 5595 | mRNA | 0.47 | 29 | 6094031 | 6194678 |
| XM_034297926.1 | False | 7042 | mRNA | 0.49 | 32 | 6094031 | 6288363 |
| XM_034297927.1 | False | 6999 | mRNA | 0.49 | 34 | 6094031 | 6288362 |
| XM_034297928.1 | False | 6951 | mRNA | 0.49 | 33 | 6094031 | 6288362 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113532744 | dcstamp | coding | downstream | 6223 | 6085341 ~ 6087808 (-) |
| oxr1a | oxr1 | coding | downstream | 314638 | 5603689 ~ 5779393 (-) |
| zmp:0000000930 | LOC108256382 | coding | downstream | 532021 | 5554727 ~ 5562010 (-) |
| psma2 | psma2,si:rp71-45k5.4,LOC108440756,LOC107592434,LOC107686300,LOC103045926,LOC107714337,LOC107724313,LOC108425697 | coding | downstream | 547692 | 5541357 ~ 5546339 (-) |
| LOC113532747 | atad2 | coding | downstream | 553054 | 5522793 ~ 5540977 (-) |
| dcaf13 | dcaf13 | coding | upstream | 3165 | 6291529 ~ 6302176 (-) |
| zmp:0000000951 | LOC108256735 | coding | upstream | 25160 | 6313524 ~ 6316258 (-) |
| rbm42 | rbm42,LOC108438105,LOC107709618,LOC107686691 | coding | upstream | 96719 | 6385083 ~ 6392314 (-) |
| itga8 | itga8,LOC107681583,LOC107689880 | coding | upstream | 106220 | 6394584 ~ 6494806 (-) |
| trnam-cau_47 | NA | coding | upstream | 141496 | 6429860 ~ 6429932 (-) |
| G327560 | NA | non-coding | downstream | 9382 | 6083366 ~ 6084649 (-) |
| G327508 | NA | non-coding | downstream | 255754 | 5837883 ~ 5838277 (-) |
| G327507 | NA | non-coding | downstream | 256249 | 5837489 ~ 5837782 (-) |
| G327505 | NA | non-coding | downstream | 257725 | 5836070 ~ 5836306 (-) |
| G327362 | NA | non-coding | downstream | 354443 | 5738537 ~ 5739588 (-) |
| G328083 | NA | non-coding | upstream | 359932 | 6648296 ~ 6741046 (-) |
| G328215 | tbrg4 | non-coding | upstream | 743000 | 7031364 ~ 7032724 (-) |
| G328439 | NA | non-coding | upstream | 1088523 | 7376887 ~ 7378436 (-) |
| G328565 | NA | non-coding | upstream | 1159809 | 7448173 ~ 7448967 (-) |
| G328562 | NA | non-coding | upstream | 1162033 | 7450397 ~ 7452117 (-) |
| zfpm2a | zfpm2,zfpm2a,LOC107714317,LOC107592441 | other | downstream | 115652 | 5829474 ~ 5978379 (-) |
| ubr5 | ubr5 | other | downstream | 1116504 | 4932155 ~ 4977527 (-) |
| LOC113532858 | LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 | other | downstream | 1746778 | 4308606 ~ 4347253 (-) |
| vsig10l | vsig10l | other | downstream | 2127916 | 3957497 ~ 3966115 (-) |
| znf385d | znf385d | other | downstream | 2297663 | 3720689 ~ 3796368 (-) |
| G328342 | LOC108256401 | other | upstream | 768430 | 7056794 ~ 7062428 (-) |
| sec61b | sec61b,LOC102796100 | other | upstream | 1090367 | 7378731 ~ 7386347 (-) |
| LOC113541109 | NA | other | upstream | 3863133 | 10151497 ~ 10156800 (-) |
| G330185 | NA | other | upstream | 4234368 | 10522732 ~ 10523263 (-) |
| ackr4b | ackr4 | other | upstream | 4634762 | 10923126 ~ 10930775 (-) |
